mRNA_H-elongata_contig53735.12731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53735.12731.1
Unique NamemRNA_H-elongata_contig53735.12731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53735.12731.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 6.200e-47
Identity = 68/94 (72.34%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:   40 PKVPFCRAEADVANMWFPAWDPENQSVITAKRVVVFGGKGIDYYSRRSGDRLSYLSDMWSLHITNTGFEWSRVTPLGKVQPSPRWQTGDSVAFG 321
            P+VPFCRA ADVANMW P W+P++Q V TAKRVVVFGG+G+DYY +R+ D+LSYLSDMW+LHITNTGF W++V P+G+V+PS RWQTGDSVA+G
Sbjct:    5 PRVPFCRAGADVANMWMPVWNPDSQLVETAKRVVVFGGRGVDYYDKRADDQLSYLSDMWALHITNTGFRWNKVVPIGQVRPSARWQTGDSVAYG 98
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BLAST of mRNA_H-elongata_contig53735.12731.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.730e-45
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:   13 KAGGGAKSEPKVPFCRAEADVANMWFPAWDPENQSVITAKRVVVFGGKGIDYYSRRSGDRLSYLSDMWSLHITNTGFEWSRVTPLGKVQPSPRWQTGDSVAFG 321
            + G G    P VPFCRA ADVANMW P W+P++Q V TAKRVVVFGG+G+DYY++R+ D+LSYLSDMW+LHITNTGF W++V P+G V PS RWQTGDSVA+G
Sbjct:   90 RGGSGMMQLPSVPFCRAGADVANMWMPVWNPDSQLVETAKRVVVFGGRGVDYYNKRADDQLSYLSDMWALHITNTGFRWNKVVPVGHVHPSARWQTGDSVAYG 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53735.12731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1X6_ECTSI6.200e-4772.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHR5_9PHAE3.730e-4567.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53735contigH-elongata_contig53735:531..2305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size330
Cds size330
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53735.12731.1prot_H-elongata_contig53735.12731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53735 531..2305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930876.0661843-CDS-H-elongata_contig53735:530..6051622930876.0661843-CDS-H-elongata_contig53735:530..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53735 531..605 -
1691679607.5259304-CDS-H-elongata_contig53735:530..6051691679607.5259304-CDS-H-elongata_contig53735:530..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53735 531..605 -
1622930876.0856915-CDS-H-elongata_contig53735:971..10681622930876.0856915-CDS-H-elongata_contig53735:971..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53735 972..1068 -
1691679607.537961-CDS-H-elongata_contig53735:971..10681691679607.537961-CDS-H-elongata_contig53735:971..1068Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53735 972..1068 -
1622930876.1177583-CDS-H-elongata_contig53735:2147..23051622930876.1177583-CDS-H-elongata_contig53735:2147..2305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53735 2148..2305 -
1691679607.5483875-CDS-H-elongata_contig53735:2147..23051691679607.5483875-CDS-H-elongata_contig53735:2147..2305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53735 2148..2305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53735.12731.1

>prot_H-elongata_contig53735.12731.1 ID=prot_H-elongata_contig53735.12731.1|Name=mRNA_H-elongata_contig53735.12731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
SGAGKAGGGAKSEPKVPFCRAEADVANMWFPAWDPENQSVITAKRVVVFG
GKGIDYYSRRSGDRLSYLSDMWSLHITNTGFEWSRVTPLGKVQPSPRWQT
GDSVAFGKR*
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mRNA from alignment at H-elongata_contig53735:531..2305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53735.12731.1 ID=mRNA_H-elongata_contig53735.12731.1|Name=mRNA_H-elongata_contig53735.12731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1775bp|location=Sequence derived from alignment at H-elongata_contig53735:531..2305- (Himanthalia elongata Himel1 dioecious)
TCTGGCGCGGGCAAGGCGGGGGGTGGAGCGAAATCCGAGCCGAAAGTGCC
GTTCTGTCGCGCCGAAGCAGACGTCGCCAACATGTGGTTCCCGGCGTGGG
ATCCGGAAAACCAGAGCGTGATAACGGCAAAGCGGGTGGTGGTGTTTGGC
GGCAAGGGGTGAGAAGGCGATTTGTCTGTGTGTCTTGTTTGTGATGGATT
CGTATAATTGAATTTCTTCAGGCTTAAGAGAGTGAGCGCTTGCCTTGATG
TCGCTGGATGCGTGAAAGGACATTTTTTTGTGGTTAGAAAAGGGGTATGG
GAGGAGGTGGAGCCCCCCCCTCACACACACATAAACATATATTTTTTCCC
CACGCTCTCGGGGATTCTCGCGCAAAATACCACCGCTCTGCTGCTGGCTG
CTGCTGGTTAGGTTGGAGCACGTTACGATATTCGCGATTGGTGACAAATT
ATTTATTTTTTTATATTGTCAAATACAAATAATTACAGGCGGATCGTGGT
AGACGATCACTGCGACTGGGCAACCTTGTCTCCCCTGGGCTCTAGGAGAA
AATAACTGAAATAAACTAAATTTTCCGATGGCGCAAAGCCTCGGGAGGAA
CGGTCCGACCCCACAGACCTCTGGGACGCGAGGGCATACAAAGGATCAAC
GCTGGGGGGAGATATATACATAGGAATGGAGATAATTAGAGAAAGAAACG
TACTCGTTGCGGTAAATGTCAGAAGCGTCCCATGACGTAGCCGGGTCGGT
CGTTGCGCTCCAGAGCCTATTAACGTAACTTTATATATATATATATATAT
ATATATATTATCTGTCTACATTACCTCTTTATTTCTTTGACGATGAAGAA
TACAACATGACACTCTTAAATAGGTCAAAGCTCGAGCACGGGTACGAATA
AATATCATATCCATAAGGCGGGGTCTTATCGAAGTACAAAACTGAAGATT
TCCAGACGATTTAAATTTAAATCGGACTCTGATTGGTCGAAAGCTAAATA
ATGCCTAGCCTTTGTCCAATCAGAAACCGATTTAAATTTAAATCGGCTGG
AAATTTTATTTTTTTTGCATCCCGTTAATACCCGCCCTAATAATAGTCAT
AACAGCGATGATGATAGTATCAATAATTAGTTACTACCGCCGCGCAATCC
GCAGCCAAGCGCAAAATACGCGAGCTCCCCCCTTTCTTTCTTTTTTTCCC
CCCTTCGTGTCACACACAACACTTGCCCGCGCGGCAGGATCGACTATTAC
AGCCGCCGCTCGGGCGATCGTCTGTCCTATCTCTCGGACATGTGGTCGCT
CCACATCACCAACACGGGTTTTGAGTGGAGCAGGGTGAGGCGACGCTTGA
AACGTCGCGGGACGTTTGCGCTGTTTTTTAAAGCGAACCACTGCTTTCTA
GTCTCTGTGCGATGGCGCCACGGCTGTCGATTAACGGCGCCACTCCCGTG
TATTGTGTGCGGTAACGTTTAGTGTGTTGGCGTCAGACCTCTTGGTTACT
TGAGGGGAACAGGTGCGCGCGCCGGCCGAAGGCTCTCTCGGACAAATAAT
TCGTGGCGTGCAGGTATACCATGCTGTCGAGAGGGAAGGGGTGGGGGTGG
TGGGGGAGGTTCCCCTGTCGGTATGCGCGCCTCACGCCATCCCCCACCTC
ACACCCTTTGTGCTCGCTATGCCTTCTTTTTTTCGCGCCCGTGAGAACAG
GTCACGCCTCTCGGAAAGGTGCAACCATCTCCTCGTTGGCAGACGGGCGA
TAGCGTTGCGTTTGGCAAGAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig53735:531..2305-

>mRNA_H-elongata_contig53735.12731.1 ID=mRNA_H-elongata_contig53735.12731.1|Name=mRNA_H-elongata_contig53735.12731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig53735:531..2305- (Himanthalia elongata Himel1 dioecious)
TCTGGCGCGGGCAAGGCGGGGGGTGGAGCGAAATCCGAGCCGAAAGTGCC
GTTCTGTCGCGCCGAAGCAGACGTCGCCAACATGTGGTTCCCGGCGTGGG
ATCCGGAAAACCAGAGCGTGATAACGGCAAAGCGGGTGGTGGTGTTTGGC
GGCAAGGGTCTGGCGCGGGCAAGGCGGGGGGTGGAGCGAAATCCGAGCCG
AAAGTGCCGTTCTGTCGCGCCGAAGCAGACGTCGCCAACATGTGGTTCCC
GGCGTGGGATCCGGAAAACCAGAGCGTGATAACGGCAAAGCGGGTGGTGG
TGTTTGGCGGCAAGGGGATCGACTATTACAGCCGCCGCTCGGGCGATCGT
CTGTCCTATCTCTCGGACATGTGGTCGCTCCACATCACCAACACGGGTTT
TGAGTGGAGCAGGGATCGACTATTACAGCCGCCGCTCGGGCGATCGTCTG
TCCTATCTCTCGGACATGTGGTCGCTCCACATCACCAACACGGGTTTTGA
GTGGAGCAGGGTCACGCCTCTCGGAAAGGTGCAACCATCTCCTCGTTGGC
AGACGGGCGATAGCGTTGCGTTTGGCAAGAGGTAGGTCACGCCTCTCGGA
AAGGTGCAACCATCTCCTCGTTGGCAGACGGGCGATAGCGTTGCGTTTGG
CAAGAGGTAG
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