mRNA_H-elongata_contig53724.12730.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A6H5KUQ8_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ8_9PHAE) HSP 1 Score: 201 bits (511), Expect = 2.980e-59 Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 1
Query: 1 QGGLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
+G LVKGPWT EEDQ IIDCI +T+WSEIAERV+GRVGKQCRERWFNHLDP+LKKSSWTP+EDEILV+GQ RFGNSWTKIAKLLPGRSENAVKNRWNSAARK
Sbjct: 195 EGALVKGPWTTEEDQIIIDCINEKMTRWSEIAERVEGRVGKQCRERWFNHLDPTLKKSSWTPEEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARK 298
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A7S2RZ51_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ51_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.150e-53 Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1
Query: 1 QGGLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARKHGK 321
Q GLVKGPWTKEEDQ IIDCI ITKWSEIAER+ GR+GKQCRERWFNHLDPSLKK WT +ED +LVE Q ++GNSWTKIAKLLPGRSENAVKNRWNSA R+ K
Sbjct: 303 QPGLVKGPWTKEEDQIIIDCIEAGITKWSEIAERIPGRIGKQCRERWFNHLDPSLKKGGWTEEEDAVLVEAQSKWGNSWTKIAKLLPGRSENAVKNRWNSATRRRQK 409
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A5A8DBZ9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBZ9_CAFRO) HSP 1 Score: 168 bits (426), Expect = 1.930e-48 Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1
Query: 7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
GLVKGPWT EEDQ I++CI ITKWSEI+ER+ GR+GKQCRERWFNHLDPS+KK W+ +ED IL E Q GN W +IAKLLPGRSEN+VKNRWNSA R+
Sbjct: 59 GLVKGPWTTEEDQVIVNCINAGITKWSEISERIPGRIGKQCRERWFNHLDPSIKKDPWSAEEDRILEEAQCSIGNKWCEIAKLLPGRSENSVKNRWNSAMRR 160
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A7S2SVF3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF3_9STRA) HSP 1 Score: 168 bits (426), Expect = 3.140e-48 Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 1
Query: 7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
GLVKG WTKEEDQ IIDCI I +WSEIAE + GRVGKQ RERWFNHLDP++KK SWT +ED IL Q R+GNSWTKIA+LLPGR+EN +KNRWNSA+R+
Sbjct: 89 GLVKGTWTKEEDQIIIDCIEAGINRWSEIAEYIPGRVGKQARERWFNHLDPTIKKGSWTDEEDAILTVAQARWGNSWTKIARLLPGRAENTIKNRWNSASRR 190
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: F0Y4D5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D5_AURAN) HSP 1 Score: 156 bits (394), Expect = 3.730e-47 Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1
Query: 7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSA 303
GLVKG +T+EED+ II+C+ +W +IAER+ GR+GKQCRERW NHLDP+LKK WT +ED ILVE Q RFGN+WTKIA+LLPGR+E+AVKNRWNSA
Sbjct: 17 GLVKGAFTEEEDKIIIECMREGGLRWMQIAERIPGRIGKQCRERWTNHLDPNLKKGGWTREEDAILVEAQQRFGNAWTKIAELLPGRAESAVKNRWNSA 115
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A7S4DB75_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB75_HETAK) HSP 1 Score: 159 bits (403), Expect = 1.700e-46 Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 1
Query: 7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSA 303
GLVKG WTKEED I+ C+ I KWS+IAER+ GR+GKQ RERWFNHLDP LKK W+P+ED +L E Q R+GN+WTKIA+LLPGRS+N++KN WNS+
Sbjct: 130 GLVKGAWTKEEDAVIVACMESGIKKWSKIAERIPGRIGKQVRERWFNHLDPHLKKGGWSPEEDAVLAEAQARWGNAWTKIARLLPGRSDNSIKNHWNSS 228
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A2R5GBT4_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBT4_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.310e-45 Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1
Query: 7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
GL+KGPWTKEED I++ I +TKWSEIA + GR+GKQCRERWFNHLDPS+KK WT +ED ILVE Q + GN W +IAK+LPGRSENAVKNRWNSA R+
Sbjct: 42 GLIKGPWTKEEDDTIMEAIESGVTKWSEIATLIPGRIGKQCRERWFNHLDPSIKKGGWTEEEDRILVEYQEKLGNRWCEIAKVLPGRSENAVKNRWNSAMRR 143
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A7S3PK53_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PK53_9STRA) HSP 1 Score: 162 bits (409), Expect = 5.130e-45 Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 1
Query: 7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKL-LPGRSENAVKNRWNSAARK 312
GLVKGPWTKEED+ I+ C + ITKWSEIA V GR+GKQCRERWFNHLDPS++K WT +ED L+EGQ GN W++IAKL LPGR ENAVKNRWN+A R+
Sbjct: 240 GLVKGPWTKEEDETILRCRQNGITKWSEIARHVSGRIGKQCRERWFNHLDPSIRKCEWTEEEDRNLIEGQALLGNKWSQIAKLFLPGRPENAVKNRWNAATRR 342
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A2R5G768_9STRA (Transcription factor MYB3R-4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G768_9STRA) HSP 1 Score: 164 bits (416), Expect = 5.850e-45 Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1
Query: 7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
GLVKGPWT+EED I CI ITKWSEIAER+ GR+GKQCRERWFNHLDP++ S+WT +E+++LV Q FGN W +IAKLLPGR ENAVKNRWNSA R+
Sbjct: 223 GLVKGPWTEEEDNMIRACIERKITKWSEIAERIPGRIGKQCRERWFNHLDPTIDHSAWTEEEEKVLVTAQATFGNRWCEIAKLLPGRPENAVKNRWNSAIRR 324
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A2R5GS76_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS76_9STRA) HSP 1 Score: 160 bits (406), Expect = 1.570e-44 Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 1
Query: 7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKL-LPGRSENAVKNRWNSAARKH 315
GLVKGPW EED+ I CI IT+WSEIA RV GR+GKQCRERWFNHLDP+++ WT +ED++L+EGQ + GN W++IAK+ LPGR ENAVKNRWN+A R+H
Sbjct: 184 GLVKGPWQPEEDETIRACIRSGITRWSEIATRVPGRIGKQCRERWFNHLDPNIRTDEWTEEEDQLLIEGQSKLGNKWSQIAKIYLPGRPENAVKNRWNAATRRH 287 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53724.12730.1 >prot_H-elongata_contig53724.12730.1 ID=prot_H-elongata_contig53724.12730.1|Name=mRNA_H-elongata_contig53724.12730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp QGGLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHback to top mRNA from alignment at H-elongata_contig53724:2447..3675+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53724.12730.1 ID=mRNA_H-elongata_contig53724.12730.1|Name=mRNA_H-elongata_contig53724.12730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1229bp|location=Sequence derived from alignment at H-elongata_contig53724:2447..3675+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53724:2447..3675+ >mRNA_H-elongata_contig53724.12730.1 ID=mRNA_H-elongata_contig53724.12730.1|Name=mRNA_H-elongata_contig53724.12730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig53724:2447..3675+ (Himanthalia elongata Himel1 dioecious)back to top |