mRNA_H-elongata_contig53724.12730.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53724.12730.1
Unique NamemRNA_H-elongata_contig53724.12730.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A6H5KUQ8_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ8_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.980e-59
Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 1
Query:    1 QGGLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
            +G LVKGPWT EEDQ IIDCI   +T+WSEIAERV+GRVGKQCRERWFNHLDP+LKKSSWTP+EDEILV+GQ RFGNSWTKIAKLLPGRSENAVKNRWNSAARK
Sbjct:  195 EGALVKGPWTTEEDQIIIDCINEKMTRWSEIAERVEGRVGKQCRERWFNHLDPTLKKSSWTPEEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARK 298          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A7S2RZ51_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ51_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.150e-53
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    1 QGGLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARKHGK 321
            Q GLVKGPWTKEEDQ IIDCI   ITKWSEIAER+ GR+GKQCRERWFNHLDPSLKK  WT +ED +LVE Q ++GNSWTKIAKLLPGRSENAVKNRWNSA R+  K
Sbjct:  303 QPGLVKGPWTKEEDQIIIDCIEAGITKWSEIAERIPGRIGKQCRERWFNHLDPSLKKGGWTEEEDAVLVEAQSKWGNSWTKIAKLLPGRSENAVKNRWNSATRRRQK 409          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A5A8DBZ9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBZ9_CAFRO)

HSP 1 Score: 168 bits (426), Expect = 1.930e-48
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
            GLVKGPWT EEDQ I++CI   ITKWSEI+ER+ GR+GKQCRERWFNHLDPS+KK  W+ +ED IL E Q   GN W +IAKLLPGRSEN+VKNRWNSA R+
Sbjct:   59 GLVKGPWTTEEDQVIVNCINAGITKWSEISERIPGRIGKQCRERWFNHLDPSIKKDPWSAEEDRILEEAQCSIGNKWCEIAKLLPGRSENSVKNRWNSAMRR 160          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A7S2SVF3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF3_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.140e-48
Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
            GLVKG WTKEEDQ IIDCI   I +WSEIAE + GRVGKQ RERWFNHLDP++KK SWT +ED IL   Q R+GNSWTKIA+LLPGR+EN +KNRWNSA+R+
Sbjct:   89 GLVKGTWTKEEDQIIIDCIEAGINRWSEIAEYIPGRVGKQARERWFNHLDPTIKKGSWTDEEDAILTVAQARWGNSWTKIARLLPGRAENTIKNRWNSASRR 190          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: F0Y4D5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D5_AURAN)

HSP 1 Score: 156 bits (394), Expect = 3.730e-47
Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSA 303
            GLVKG +T+EED+ II+C+     +W +IAER+ GR+GKQCRERW NHLDP+LKK  WT +ED ILVE Q RFGN+WTKIA+LLPGR+E+AVKNRWNSA
Sbjct:   17 GLVKGAFTEEEDKIIIECMREGGLRWMQIAERIPGRIGKQCRERWTNHLDPNLKKGGWTREEDAILVEAQQRFGNAWTKIAELLPGRAESAVKNRWNSA 115          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A7S4DB75_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB75_HETAK)

HSP 1 Score: 159 bits (403), Expect = 1.700e-46
Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSA 303
            GLVKG WTKEED  I+ C+   I KWS+IAER+ GR+GKQ RERWFNHLDP LKK  W+P+ED +L E Q R+GN+WTKIA+LLPGRS+N++KN WNS+
Sbjct:  130 GLVKGAWTKEEDAVIVACMESGIKKWSKIAERIPGRIGKQVRERWFNHLDPHLKKGGWSPEEDAVLAEAQARWGNAWTKIARLLPGRSDNSIKNHWNSS 228          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A2R5GBT4_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBT4_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.310e-45
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
            GL+KGPWTKEED  I++ I   +TKWSEIA  + GR+GKQCRERWFNHLDPS+KK  WT +ED ILVE Q + GN W +IAK+LPGRSENAVKNRWNSA R+
Sbjct:   42 GLIKGPWTKEEDDTIMEAIESGVTKWSEIATLIPGRIGKQCRERWFNHLDPSIKKGGWTEEEDRILVEYQEKLGNRWCEIAKVLPGRSENAVKNRWNSAMRR 143          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A7S3PK53_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PK53_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.130e-45
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKL-LPGRSENAVKNRWNSAARK 312
            GLVKGPWTKEED+ I+ C  + ITKWSEIA  V GR+GKQCRERWFNHLDPS++K  WT +ED  L+EGQ   GN W++IAKL LPGR ENAVKNRWN+A R+
Sbjct:  240 GLVKGPWTKEEDETILRCRQNGITKWSEIARHVSGRIGKQCRERWFNHLDPSIRKCEWTEEEDRNLIEGQALLGNKWSQIAKLFLPGRPENAVKNRWNAATRR 342          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A2R5G768_9STRA (Transcription factor MYB3R-4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G768_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.850e-45
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNSAARK 312
            GLVKGPWT+EED  I  CI   ITKWSEIAER+ GR+GKQCRERWFNHLDP++  S+WT +E+++LV  Q  FGN W +IAKLLPGR ENAVKNRWNSA R+
Sbjct:  223 GLVKGPWTEEEDNMIRACIERKITKWSEIAERIPGRIGKQCRERWFNHLDPTIDHSAWTEEEEKVLVTAQATFGNRWCEIAKLLPGRPENAVKNRWNSAIRR 324          
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Match: A0A2R5GS76_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS76_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.570e-44
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    7 GLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNHLDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKL-LPGRSENAVKNRWNSAARKH 315
            GLVKGPW  EED+ I  CI   IT+WSEIA RV GR+GKQCRERWFNHLDP+++   WT +ED++L+EGQ + GN W++IAK+ LPGR ENAVKNRWN+A R+H
Sbjct:  184 GLVKGPWQPEEDETIRACIRSGITRWSEIATRVPGRIGKQCRERWFNHLDPNIRTDEWTEEEDQLLIEGQSKLGNKWSQIAKIYLPGRPENAVKNRWNAATRRH 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53724.12730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUQ8_9PHAE2.980e-5986.54MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2RZ51_9STRA2.150e-5379.44Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A5A8DBZ9_CAFRO1.930e-4871.57Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S2SVF3_9STRA3.140e-4872.55Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F0Y4D5_AURAN3.730e-4768.69Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S4DB75_HETAK1.700e-4666.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2R5GBT4_9STRA1.310e-4569.61Transcription factor MYB3R-2 n=1 Tax=Hondaea ferme... [more]
A0A7S3PK53_9STRA5.130e-4568.93Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2R5G768_9STRA5.850e-4569.61Transcription factor MYB3R-4 n=1 Tax=Hondaea ferme... [more]
A0A2R5GS76_9STRA1.570e-4465.38Transcription factor MYB3R-2 n=1 Tax=Hondaea ferme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53724contigH-elongata_contig53724:2447..3675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue3e-35
Seed eggNOG ortholog44056.XP_009035212.1
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-19_002430.1
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.9641032-CDS-H-elongata_contig53724:2446..26791622930875.9641032-CDS-H-elongata_contig53724:2446..2679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53724 2447..2679 +
1691679607.4921274-CDS-H-elongata_contig53724:2446..26791691679607.4921274-CDS-H-elongata_contig53724:2446..2679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53724 2447..2679 +
1622930875.9986427-CDS-H-elongata_contig53724:3572..36751622930875.9986427-CDS-H-elongata_contig53724:3572..3675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53724 3573..3675 +
1691679607.5102184-CDS-H-elongata_contig53724:3572..36751691679607.5102184-CDS-H-elongata_contig53724:3572..3675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53724 3573..3675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53724.12730.1prot_H-elongata_contig53724.12730.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53724 2447..3675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53724.12730.1

>prot_H-elongata_contig53724.12730.1 ID=prot_H-elongata_contig53724.12730.1|Name=mRNA_H-elongata_contig53724.12730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
QGGLVKGPWTKEEDQKIIDCITHNITKWSEIAERVDGRVGKQCRERWFNH
LDPSLKKSSWTPKEDEILVEGQGRFGNSWTKIAKLLPGRSENAVKNRWNS
AARKHGKKNSRN
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mRNA from alignment at H-elongata_contig53724:2447..3675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53724.12730.1 ID=mRNA_H-elongata_contig53724.12730.1|Name=mRNA_H-elongata_contig53724.12730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1229bp|location=Sequence derived from alignment at H-elongata_contig53724:2447..3675+ (Himanthalia elongata Himel1 dioecious)
CAGGGTGGACTGGTCAAGGGGCCGTGGACGAAGGAAGAGGACCAGAAGAT CATCGATTGTATCACACACAACATCACCAAGTGGTCAGAGATCGCCGAGC GCGTGGATGGGCGCGTGGGAAAGCAGTGTCGAGAGAGGTGGTTCAATCAT CTCGACCCTTCTCTCAAGAAGTCTAGCTGGACACCGAAAGAGGACGAAAT CCTCGTGGAGGGTCAAGGCCGCTTCGGCAACAGGTCAGGCTCAAATGGTG GTATACTCGGGAGTCGCCAGTTGGGGAGCACATATCTATAGCACATATCT AGCCGTGATATCCCTCGCAATAGTGAAGTCGACTTTCATTGCCCAGTAAT ATACTGGTATATGATACGAAATTGGTTATATTATCAAGATGGATAGACTA TATCAAATATTAATAGTGACGCGGTGTAGTTTTTGTCGTATAGCTTACGT TTCCTGCCCACCTTACAATGGCGCACACTATGTGATAAATATGGTTAATC CTTCCTAATTACCATAGTTCACTCTCTAGGCTATAGTATACTATAGTACT TTGGTTTGGCGTCATAGTCCACATTTCATGATGAATAATGCAAGTGTACG GGACAATGACGAGATCCCCGACATTAATCGTCGACCCGATGAATTTACTA TTATTGGAGAACACGATTAACCAATCACATGTAATGATTTTGTGCTTAAA TGTAGTAATGTACACATTTGAATCTGACGATAGTTGGTCCCCTGGACTGC ACCTCTCATGGAGCTAAGAAGGCGTGGATGTTCGGAGGGTTGCAATGAGT TCATATGTTTTTTTCATAAAAATAATACGTACGGTGTGTTTCCGGAAATT GGGCGTAAGCAGACTCGGAAAGTGATCATTGTGAACATAACATGCTTATA GCATGGTCGTGTCTGAGGGCCGGTACCATAGTTGGTTATTCAGTGAAATA GAGGAACTCGGCAGGACAGAGGTCCTTTGACGGGTCACGTTTTCCCCGTG TGAAGTTTCCATCGGCCTCGTTGAGGTCACTGCGCCCCCCCTATATAGTA CCGGTACTCGGGACAGACGATGGTCGATTCCCTTGACTGTAACAATTATG TGGCTCTTTTTCGATGAAAACGGCAGTTGGACGAAGATCGCGAAATTGTT GCCCGGGAGGTCTGAGAATGCTGTGAAAAATCGGTGGAACTCTGCTGCCA GAAAACACGGCAAGAAAAACAGCAGGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig53724:2447..3675+

>mRNA_H-elongata_contig53724.12730.1 ID=mRNA_H-elongata_contig53724.12730.1|Name=mRNA_H-elongata_contig53724.12730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig53724:2447..3675+ (Himanthalia elongata Himel1 dioecious)
CAGGGTGGACTGGTCAAGGGGCCGTGGACGAAGGAAGAGGACCAGAAGAT
CATCGATTGTATCACACACAACATCACCAAGTGGTCAGAGATCGCCGAGC
GCGTGGATGGGCGCGTGGGAAAGCAGTGTCGAGAGAGGTGGTTCAATCAT
CTCGACCCTTCTCTCAAGAAGTCTAGCTGGACACCGAAAGAGGACGAAAT
CCTCGTGGAGGGTCAAGGCCGCTTCGGCAACAGCAGGGTGGACTGGTCAA
GGGGCCGTGGACGAAGGAAGAGGACCAGAAGATCATCGATTGTATCACAC
ACAACATCACCAAGTGGTCAGAGATCGCCGAGCGCGTGGATGGGCGCGTG
GGAAAGCAGTGTCGAGAGAGGTGGTTCAATCATCTCGACCCTTCTCTCAA
GAAGTCTAGCTGGACACCGAAAGAGGACGAAATCCTCGTGGAGGGTCAAG
GCCGCTTCGGCAACAGTTGGACGAAGATCGCGAAATTGTTGCCCGGGAGG
TCTGAGAATGCTGTGAAAAATCGGTGGAACTCTGCTGCCAGAAAACACGG
CAAGAAAAACAGCAGGAACTTGGACGAAGATCGCGAAATTGTTGCCCGGG
AGGTCTGAGAATGCTGTGAAAAATCGGTGGAACTCTGCTGCCAGAAAACA
CGGCAAGAAAAACAGCAGGAAC
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