mRNA_H-elongata_contig53700.12726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53700.12726.1
Unique NamemRNA_H-elongata_contig53700.12726.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A6H5L8Y3_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Y3_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 1.790e-115
Identity = 263/634 (41.48%), Postives = 350/634 (55.21%), Query Frame = 2 
Query:   11 AFCGAICAENARRTWHGSECLDISG-KPLEPAMLGLSPECRAALRAVRRTMRE----------------------ETPGASSAHSCAILSTSDSGGNLAIGF-----GDLQEHYTVRSPRQRDLLETEAAIATVLATGSGMESRENDRGMDRPGD-----RLVEESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVG-SVQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPKGNVGRTKTHPGSSNIWPGATAQ---------------SHITEFGCTEAR---CHGTLNVGMSP-------------TQSPSYEKEVEGQRLPAAQISEL----------PSSQSSKCLFLWCNRCGARLSQRSTEVLLEEDEDDRRLWADVLLAVARLEDQSRMEDGLDE-----------TRRTCRQQKCLKTSAPSAVSLSEAVANSATAAKD---LVVQRVQWRDRRLSPASMRRATAHDVHARLLAMEGNFSRAADACAVALKVLARRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDEQLAALSKMQALCAA 1645
            AFCG  C+  A + WHGSEC+D S   PLEPA+ G+SP C  ALRA +R  R+                      ET GA       I S+   GG   + +     G+LQEHY  RS R+RDLLETEAA+  VLA G G +   +   + R G      R   E+ E +AA+LAT LVKVSTNAF +S+LR ++   G +V+ + H  VAV LY  A+M+NHSC PNALA+F GGE+R+VATR I+ GEPV+ISYGP ASK          +S  S+R++ L  AYFFRC C AC P       T +   S     G   Q               S  T+F CTEA    C GTL VG+ P             T        VE   +P+  I+ +          PS +  + + LWC+RCG+R+     + LL+ED++DRRLW +   A++  E  +    G D+           +R    ++ C K+S     S++ A +  + A+ D   LV++R++WRDR L+  SMRRA AHD+HAR+LA   +F  AADACA A+ VL RRF+PE+ ELG+E+LKLAELCFNAG  ++C AAC +A+ SL VCL   DEQL AL+ +QALCAA
Sbjct:  191 AFCGRGCSTAALQEWHGSECVDASSCTPLEPALSGVSPTCMVALRAYKRARRQGGQLPKRTDSGQGDAGVAVTVTETQGACQNRFGNIASSPPRGGGEDVAWPKVKLGNLQEHYAARSARERDLLETEAAVTAVLANGFGSDIDLDADSLGRSGSGRCATRTSTEACELVAAELATTLVKVSTNAFTISSLRCSDSRAGHNVRPLKHATVAVGLYLVASMINHSCRPNALASFHGGEMRVVATRAIERGEPVTISYGPLASK----------MSSTSERQAYLSRAYFFRCECIACHPLSEETATTPSRR-SRGSEGGDERQLTDRDKEGKAIEATFSKRTDFACTEAESGGCPGTLCVGVPPXXXXXXXXXXXXSTTQGCINSGVESSNVPSPCINRVQAVASTSSTSPSPRRMEVVVLWCDRCGSRVPPDLADALLKEDKEDRRLWEEAKAAMSSSEKGAGRSGGDDDGELKSMSPPRRSRPNTGERWC-KSSTTEDGSVNAAPSPGSFASSDALSLVMERIRWRDRYLTTTSMRRAVAHDMHARVLASREDFPGAADACARAVSVLKRRFSPEDQELGIEFLKLAELCFNAGWTDKCTAACVKAKESLGVCLQPGDEQLEALNTLQALCAA 812
[Close]
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: D7FV15_ECTSI (Set and mynd domain containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV15_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 3.380e-104
Identity = 238/558 (42.65%), Postives = 317/558 (56.81%), Query Frame = 2 
Query:  167 ETPGASSAHSCAILSTSDSGGNLAIGF-----GDLQEHYTVRSPRQRDLLETEAAIATVLATGSGMES-----RENDRGMDRPGDRLVEESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVG-SVQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPKGNV-----GRTKTHPGSSNIW------PGATAQ---SHITEFGCTEAR---CHGTLNVGMSP-------------TQSPSYEKEVEGQRLP----------AAQISELPSSQSSKCLFLWCNRCGARLSQRSTEVLLEEDEDDRRLWADVLLAVARLEDQSRMEDGLDE-----------TRRTCRQQKCLKTSAPSAVSLSEAVANSATAAKD---LVVQRVQWRDRRLSPASMRRATAHDVHARLLAMEGNFSRAADACAVALKVLARRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDEQLAALSKMQALCAA 1645
            ET GA      ++ S+   GG   + +     G+LQEHY  RS R+RDLLETEAA+  VLA+G G  +                 R   E+ E +AA+LAT LVKVSTNAF VS+LR ++P  G +V+ + H  VAV LY  A+M+NHSC PNALA+F GGE+R+VATR I+ GEPV+ISYGP ASK          +S AS+R++ L  AYFFRC C AC PP         GR++   G            G   +   S  T+F CTEA    C GTL VG+SP             T         E   +P          A+  S  PS +  + + LWC+RCG+R+     + LL+ED++DRRLW +   A++  E ++    G D+           +R    ++ C K+S     S++ A    ++A+ D   LVV+R++WRDR L+  SMRRA AHD+HAR+LA   +F  AADACA A+ VL RRF+PE+ ELG+E+LKLAELCFNAG  ++C AAC +AR SL VCL   DEQL AL+ +QALCAA
Sbjct:   36 ETRGACHDRFGSVASSPPRGGGDDVAWPNVKLGNLQEHYAARSARERDLLETEAAVTAVLASGFGSGTDLXXXXXXXXXXXXXATRTSTEACELVAAELATTLVKVSTNAFTVSSLRCSDPPAGHNVRPLKHATVAVGLYLVASMMNHSCRPNALASFHGGEMRVVATRAIERGEPVTISYGPLASK----------ISSASERQAYLSRAYFFRCECIACHPPPEETATTPSGRSRGSEGGDERQLTDREKEGRATEATFSKRTDFACTEAESGACPGTLRVGVSPXXXXXXXXXXXXSTTQGCLISGAESSNVPSPCFNRVQAVASLSSTSPSPRRMEVVVLWCDRCGSRVPPDLADALLKEDKEDRRLWEEAKAAMSSSEKEAGRCGGGDDGELKSMPPPRRSRPNTGERSC-KSSTTEDGSVNAAPFPGSSASSDTLSLVVERIRWRDRYLTTTSMRRAVAHDMHARVLASREDFPGAADACARAVSVLKRRFSPEDQELGIEFLKLAELCFNAGWTDKCTAACVKARESLGVCLQPGDEQLEALNTLQALCAA 582
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BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A8B7Y3H6_ACAPL (SET and MYND domain-containing protein 4-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y3H6_ACAPL)

HSP 1 Score: 72.4 bits (176), Expect = 2.840e-9
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:  512 VQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAAC 796
            V +    R+A A+Y TA++LNHSC PN +A+FDG  + + ATRDI+ GE +   YGP A   S             +R+ +L+  YFF C C AC
Sbjct:  332 VDTTKQARLATAVYPTASLLNHSCQPNTIASFDGAILTMRATRDIQPGEEILHCYGPHAKHMSR-----------DERQKALQEQYFFTCTCHAC 415
[Close]
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A139APV2_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139APV2_GONPJ)

HSP 1 Score: 71.6 bits (174), Expect = 5.890e-9
Identity = 75/277 (27.08%), Postives = 112/277 (40.43%), Query Frame = 2 
Query:    8 EAFCGAICAENARRTWHGSEC-LDISGKPLEPAMLGLSPECRAALRAVRRTMREETPG--ASSAHSCAILSTSDSGGNLAIGFGDLQEHYTVRSP---RQRDLLETEAAIATVLATGSGMESRENDRGMDRPGDRLVEESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVGSVQSINHTRVAVALYCTAAMLNHSCVPNALATF-DGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPKGNV 817
            E +CG  C   A   WH  EC L + G  +   +    P  R  LR   R   E + G  A +    + L  +    +L  G  +L       S       DLL   A  A V+A  S     E  R   +P       S E     L  ++++   N  AV  +  T+    S        V  A+Y   +M NHSCVPNA+ATF DG  + +   + +++G  V+ISYGP+ ++          +     RR  L+  + F C C AC+  + + 
Sbjct:  307 EMYCGGPCQVAAWEAWHHVECELAVGGLGVSAFLRVAPPHVRLGLRGFWRWRAEMSHGEKAPAPTDDSALDLTPQWTSLWTGLSELVSQLNAASSLDLNHPDLLFESALAAAVVAEISPEPLLEPHR---QPPHESAAASAEIA---LTMSMLRALRNTMAVKRVVRTQEGESSADEYER-HVGSAVYLFGSMANHSCVPNAVATFVDGANLTLRLVKPVQSGSEVTISYGPTDTR----------IPSREVRRQILQDKWDFCCRCGACETERSST 566
[Close]
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A2G8L8R3_STIJA (SET and MYND domain-containing protein 4 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L8R3_STIJA)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-8
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:  512 VQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAAC 796
            V++    RVA A+Y T +++NH C PN +A+F+G ++ I ATR+IK GE +  SYGP  +    A           +R   L+  YFF C C+AC
Sbjct:  369 VETTEQVRVASAVYPTVSLMNHGCDPNVIASFNGSDVTIRATRNIKNGEEICHSYGPHKNHMPVA-----------ERLRKLKEQYFFDCTCSAC 452
[Close]
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: A0A067CP86_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CP86_SAPPC)

HSP 1 Score: 70.9 bits (172), Expect = 1.260e-8
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2 
Query: 1358 ATAHDVHARLLAMEGNFSRAADACAVALKVLARRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDEQLAALSKMQALCA 1642
            A A D+ A+LLAM G F+ A+DAC  A+ VL   + P + ELG EYLK A+L FNA     C     RA+ SL + LP++D   A +++MQ+  A
Sbjct: 1191 AEALDLRAQLLAMHGAFAAASDACLAAIAVLETHYDPLDAELGHEYLKAAQLLFNAARWPSCRMYLARAKASLTLHLPATDALHAEMTEMQSYVA 1285
[Close]
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: UPI0018D77732 (SET and MYND domain-containing protein 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D77732)

HSP 1 Score: 70.5 bits (171), Expect = 1.480e-8
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2 
Query:  512 VQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAAC 796
            V +    R+A A+Y TA++LNHSC PN +A+FDG  + + ATRDI+ G+ +   YGP A       H +  V     R+ +L+  YFF C C AC
Sbjct:  670 VDTTKQVRLATAIYPTASLLNHSCQPNVIASFDGAVLTMRATRDIQPGQEILHCYGPHAK------HMSRDV-----RQRALQEQYFFTCTCHAC 753
[Close]
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: UPI0001CB9E1E (SET and MYND domain-containing protein 4-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9E1E)

HSP 1 Score: 69.3 bits (168), Expect = 2.680e-8
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 2 
Query:  404 ESRETLAAKLATALVKVSTNAFAVSTLRG-TEPAVGSVQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPK 808
            ++ + +A+ L   L+++  N  AV+ +   T+ +   V +    R+AVA+Y TA+MLNHSC PN +A +DG ++ I AT  IK G  V   YGP  S                +R   LR  Y+F C C  C  P+
Sbjct:  327 DAEKAVASVLLHHLLQLRCNVHAVTEVATKTDSSTSFVATTQQIRIAVAVYGTASMLNHSCTPNVIAGYDGNQLTIRATEMIKKGGEVLHCYGPRVSDM-----------FRDERLKVLRDQYYFTCKCMFCGIPQ 451
[Close]
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: UPI000B45D5F6 (SET and MYND domain-containing protein 4-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45D5F6)

HSP 1 Score: 65.9 bits (159), Expect = 2.410e-7
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 2 
Query:  386 GDRLVEESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVGS-VQSINHTRVAVALYCTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASPAYHAAFSVSLASQRRSSLRSAYFFRCGCAAC 796
            G R V E    +   L   + ++  NA A++ L+ T+    S V + +  RVA A+Y TA+++NHSC P  +++FD   + + A RD+K G  +   YGP   + S A            RR  L+  YFF C C AC
Sbjct:  162 GARDVSEVERYVGGLLLRHIQQLVCNAHAITELQVTQATDQSLVDTKSQVRVATAIYPTASLMNHSCDPTIISSFDRDSLVVRAVRDVKEGMEIYNCYGPHHKRMSGA-----------DRRQILKEQYFFDCQCNAC 288
[Close]
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Match: T0PZ94_SAPDV (SET and MYND domain-containing protein 4 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PZ94_SAPDV)

HSP 1 Score: 66.2 bits (160), Expect = 2.730e-7
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 2 
Query: 1283 TAAKDLVVQRVQWRDRRLSPASMRRATAHDVHARLLAMEGNFSRAADACAVALKVLARRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDEQLAALSKMQALCAAQ 1648
            TA   LV  RV      L P  +  A A D+ A+L A++G+F+ A+DAC  A+ +L   + P + ELG EYLK A+L FNA     C     RA+ SL + LP++D     +++M A  A++
Sbjct:  672 TAVDALVASRVTA----LPPNHLAIAEALDLRAQLWAVQGDFAAASDACVQAIALLEAHYDPLDAELGHEYLKAAQLLFNAERWPSCRVYLGRAKRSLALHLPATDALFREMAEMHAYVASR 789
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53700.12726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Y3_9PHAE1.790e-11541.48SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FV15_ECTSI3.380e-10442.65Set and mynd domain containing protein, putative n... [more]
A0A8B7Y3H6_ACAPL2.840e-941.05SET and MYND domain-containing protein 4-like n=1 ... [more]
A0A139APV2_GONPJ5.890e-927.08Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A2G8L8R3_STIJA1.130e-838.95SET and MYND domain-containing protein 4 n=1 Tax=S... [more]
A0A067CP86_SAPPC1.260e-844.21Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
UPI0018D777321.480e-841.05SET and MYND domain-containing protein 4-like n=1 ... [more]
UPI0001CB9E1E2.680e-833.82SET and MYND domain-containing protein 4-like n=1 ... [more]
UPI000B45D5F62.410e-733.33SET and MYND domain-containing protein 4-like n=1 ... [more]
T0PZ94_SAPDV2.730e-737.70SET and MYND domain-containing protein 4 n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53700contigH-elongata_contig53700:2..3513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.5
Seed ortholog evalue1.1e-95
Seed eggNOG ortholog2880.D7FV15
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMYND zinc finger and SET domain protein
Ec32 orthologEc-14_003800.1
Exons3
Model size2941
Cds size1566
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53700.12726.1prot_H-elongata_contig53700.12726.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53700 105..2241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.5160284-UTR-H-elongata_contig53700:1..1041622930875.5160284-UTR-H-elongata_contig53700:1..104Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53700 2..104 +
1691679607.2826967-UTR-H-elongata_contig53700:1..1041691679607.2826967-UTR-H-elongata_contig53700:1..104Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53700 2..104 +
1622930875.5940838-UTR-H-elongata_contig53700:2241..35131622930875.5940838-UTR-H-elongata_contig53700:2241..3513Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53700 2242..3513 +
1691679607.3336976-UTR-H-elongata_contig53700:2241..35131691679607.3336976-UTR-H-elongata_contig53700:2241..3513Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53700 2242..3513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.5473948-CDS-H-elongata_contig53700:104..4521622930875.5473948-CDS-H-elongata_contig53700:104..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53700 105..452 +
1691679607.2940686-CDS-H-elongata_contig53700:104..4521691679607.2940686-CDS-H-elongata_contig53700:104..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53700 105..452 +
1622930875.5680592-CDS-H-elongata_contig53700:733..10061622930875.5680592-CDS-H-elongata_contig53700:733..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53700 734..1006 +
1691679607.3060825-CDS-H-elongata_contig53700:733..10061691679607.3060825-CDS-H-elongata_contig53700:733..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53700 734..1006 +
1622930875.5802302-CDS-H-elongata_contig53700:1296..22411622930875.5802302-CDS-H-elongata_contig53700:1296..2241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53700 1297..2241 +
1691679607.3206007-CDS-H-elongata_contig53700:1296..22411691679607.3206007-CDS-H-elongata_contig53700:1296..2241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53700 1297..2241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53700.12726.1

>prot_H-elongata_contig53700.12726.1 ID=prot_H-elongata_contig53700.12726.1|Name=mRNA_H-elongata_contig53700.12726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=522bp
MLGLSPECRAALRAVRRTMREETPGASSAHSCAILSTSDSGGNLAIGFGD
LQEHYTVRSPRQRDLLETEAAIATVLATGSGMESRENDRGMDRPGDRLVE
ESRETLAAKLATALVKVSTNAFAVSTLRGTEPAVGSVQSINHTRVAVALY
CTAAMLNHSCVPNALATFDGGEIRIVATRDIKTGEPVSISYGPSASKASP
AYHAAFSVSLASQRRSSLRSAYFFRCGCAACDPPKGNVGRTKTHPGSSNI
WPGATAQSHITEFGCTEARCHGTLNVGMSPTQSPSYEKEVEGQRLPAAQI
SELPSSQSSKCLFLWCNRCGARLSQRSTEVLLEEDEDDRRLWADVLLAVA
RLEDQSRMEDGLDETRRTCRQQKCLKTSAPSAVSLSEAVANSATAAKDLV
VQRVQWRDRRLSPASMRRATAHDVHARLLAMEGNFSRAADACAVALKVLA
RRFAPEEPELGVEYLKLAELCFNAGLLERCLAACQRARVSLDVCLPSSDE
QLAALSKMQALCAAQLRLSGI*
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mRNA from alignment at H-elongata_contig53700:2..3513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53700.12726.1 ID=mRNA_H-elongata_contig53700.12726.1|Name=mRNA_H-elongata_contig53700.12726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3512bp|location=Sequence derived from alignment at H-elongata_contig53700:2..3513+ (Himanthalia elongata Himel1 dioecious)
CGGCCTCGAAGCCTTTTGCGGTGCCATATGCGCGGAGAACGCACGGAGAA
CGTGGCACGGATCCGAATGCCTCGATATATCTGGAAAACCACTGGAGCCA
GCCATGTTGGGATTATCCCCCGAGTGTAGAGCGGCGCTCAGAGCAGTCCG
GCGAACCATGCGGGAGGAAACACCCGGGGCCTCGAGCGCTCATTCTTGTG
CTATCCTTTCCACCTCAGACAGTGGTGGAAACCTGGCAATAGGGTTCGGT
GACCTTCAAGAACACTACACGGTACGATCACCACGCCAGCGTGACTTGTT
GGAAACCGAAGCGGCAATTGCAACAGTCCTTGCAACCGGCAGCGGTATGG
AAAGCAGAGAAAACGACCGCGGCATGGATAGGCCCGGTGACCGTTTGGTC
GAGGAATCACGCGAGACTCTCGCTGCTAAGCTAGCGACGGCGTTGGTGAA
GGTGACAAGAAAGACTGTTCTTGGGGTGTACAGTAATGTTGGAATTTCCA
GCGTCTTTGTCCTAAAGGGGTTTGTGTCGACCTGGTCGAGCTCGATTCCA
TGCTGAGCCCTGTCAGCTACTTCTCTCCGCGTTCAATATCCGCTCCTCAC
GAATGGTTAAGCGTCGCCTCTATTTTTTTTTACCGTGCTTGTTTGCGTTT
CGGGAAAGCCTCGGTCGACATGAGATATACCATCAACGAAGCATACAACG
CGATCCCGCCAAAAAACGATCCGCTTGACCAGGTTAGTACTAACGCCTTC
GCCGTGTCGACGCTTCGTGGAACGGAGCCCGCAGTTGGTAGCGTACAATC
AATAAACCACACACGGGTGGCCGTTGCGCTCTACTGCACGGCGGCGATGT
TAAACCATTCCTGTGTCCCCAATGCCCTAGCCACGTTCGACGGAGGGGAG
ATACGAATCGTCGCTACGCGTGATATAAAGACGGGGGAGCCTGTGAGCAT
TTCCTACGGACCGTCGGCATCGAAGGCAAGTCCTGCTTACCACGCGGCGT
TTAGTGTACTCTAGCGATGTCGGGAGGGTAATATTTTAGTGCGAGGTCGT
TGGCCGTACTGTGGTACTTGTTCCAGAGTGCAGGACGAAACCTCGCGAGT
ATGTTGTTTTCATTGATTTCGCCGTTTTTTCCGTAATCGTTTATTTTTTT
ACCGAGGGTTACGCGTATGGTTGACCTTAAAGACATACCCGAAATTGTCC
TGCGCGAATATATCCCATGTTGTGGGAATAGTGGAGTGATCATCAGCTAC
CCGTAGTCCTCTAGACCACCTGCATATCCATCCACCGGCCGACAGGTTTC
GTTGGCTTCCCAACGGCGTTCATCCCTTCGAAGCGCCTACTTCTTCCGTT
GCGGGTGCGCCGCGTGCGACCCCCCAAAAGGTAACGTGGGTAGGACTAAG
ACTCACCCCGGAAGCTCGAATATTTGGCCCGGAGCCACGGCGCAATCCCA
TATCACTGAGTTTGGATGTACAGAGGCTCGGTGCCATGGGACGCTCAACG
TTGGGATGTCTCCGACGCAGTCGCCATCGTATGAAAAAGAGGTGGAAGGG
CAAAGGTTGCCGGCCGCACAAATCTCAGAGCTCCCGTCCTCGCAATCTAG
TAAGTGCCTGTTCCTTTGGTGTAACCGCTGTGGAGCTCGCTTGTCCCAGC
GTTCGACAGAAGTGCTGCTGGAGGAGGACGAAGACGACCGACGCCTTTGG
GCGGATGTATTGTTGGCGGTAGCTCGCTTAGAAGACCAATCCCGCATGGA
GGATGGCTTAGATGAAACTAGACGCACATGTAGGCAGCAGAAATGTCTGA
AGACGTCTGCGCCTTCAGCAGTATCATTGAGCGAGGCTGTGGCTAACTCG
GCGACCGCGGCCAAGGATCTTGTAGTTCAACGAGTTCAGTGGCGTGACCG
TCGACTGTCTCCTGCTTCAATGAGGCGGGCGACTGCGCACGATGTGCACG
CGCGTCTGCTTGCCATGGAAGGGAACTTCTCGAGGGCTGCCGATGCCTGT
GCGGTAGCGTTGAAAGTGCTCGCGCGGAGGTTCGCGCCGGAGGAACCGGA
ACTGGGCGTCGAGTATCTTAAATTGGCTGAGCTATGCTTCAACGCGGGTC
TCTTGGAGCGATGCTTGGCGGCCTGTCAACGCGCGAGGGTTTCGCTGGAC
GTGTGCCTACCGTCAAGTGACGAGCAGCTCGCGGCGTTAAGCAAAATGCA
GGCCTTGTGTGCGGCCCAACTGCGCCTTTCGGGGATATAGCATAATCAAT
TTTGCCATATTCTCCCGGTGTACGATAGTGCACAGCATCACGGAATCTGG
GGCTGGTGCCGTAGTCCTATTCATAAAAGCCTTCGTGCGTCATCGATTTT
GATGAGGGTAGAGCGCGTTGGACTCCTTTGACGTGGCACCCCGTGATGAG
GGTTTCTTCGCCAGCTCTTCGCGGTCAGATCTGCCATTTGCCGAACGTTG
CTCCCCATTTTTCGAATATAACTTATGTGCCTGTTGCTACGTACGGTTGT
CCCTGGATTGCCCCGTCCCCCGAGCGGTGCATGACTTCGACACCCAAAAA
TATCAGATCAGTATCCGCGGATCTTCCTTGGTAAATTTTCCCAGCTCTGG
ATCCCAAAGAAAACAATTATTTTATGAGGTCAGTAGTATTATTAGTAGTG
TTGTCATTCCATTTGTTCTGGACGTCAGACTTCTGGACGCACCAGCCGGG
GTCACATAGGATTTCTCTGCCTTCCTTCTGCAATGCTTGCCTTAATTTTA
ATTTTTTATCGCGAGGAGGATTCAGCCGTCACTTTCCCTCGTCGACTGTG
AAGCCGATTTTTGTCTACCCACGAAATAATCGTTCTCCATTTGTTGGGCA
TGATGTGAGAGAAATCCCAGTTCGTGTAACTACGCACCGAGATTCGAATT
CGCGTCCCAACGTCAGAAGATTTCGAGGTTACGAAATGATCCACCGGGGC
TTCCGTCATGAATTATCTCCCGAAATGAGCTGCCCCACATTGTATTTAAT
TGCTAAACCAAATGACACTGCCTCGGTAGTAGTAGGTGGGTCCTGAAATC
ACCTAAAGCGCCGTCAAAGAGAGTGTGATGAAAGTAGAGTCTGAACTGCT
GGGGTGTGTATCTCGCTAGTGATTATGGCCTAAAATATGGCGTGCGCTGG
AAATCTATTTTTGCTTAAATTTCACTCAGCACATAATTTCAGAGAAGCTA
TGTGCGGCTTGCCGCACACCGAGATTTTGGGTCCGCGCTTTTTGAAAAAA
AAATGGGGTCCATATTTTCGCCGTAGGCGATTTTTTAACATACCACTTTG
GTCCGAAATATAGGGGCCGTCTAGGCTCAAATGTTGATATCTTCGGATAG
AAAATGTTTTTTTTACCCGGATTTTTGAATTGTGTCCTCTGTGACTTGGT
GCGGTGGGAAGTGGTCCTTTAGATGAATCTGTCAGCCTGACACATGTTAA
CCTAGTAAGGGCAAACGGACCCCGCCTCACAAACGCGCCCGCTGGGATTG
GGGTAAACTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig53700:2..3513+

>mRNA_H-elongata_contig53700.12726.1 ID=mRNA_H-elongata_contig53700.12726.1|Name=mRNA_H-elongata_contig53700.12726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3132bp|location=Sequence derived from alignment at H-elongata_contig53700:2..3513+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGGATTATCCCCCGAGTGTAGAGCGGCGCTCAGAGCAGTCCGGCG
AACCATGCGGGAGGAAACACCCGGGGCCTCGAGCGCTCATTCTTGTGCTA
TCCTTTCCACCTCAGACAGTGGTGGAAACCTGGCAATAGGGTTCGGTGAC
CTTCAAGAACACTACACGGTACGATCACCACGCCAGCGTGACTTGTTGGA
AACCGAAGCGGCAATTGCAACAGTCCTTGCAACCGGCAGCGGTATGGAAA
GCAGAGAAAACGACCGCGGCATGGATAGGCCCGGTGACCGTTTGGTCGAG
GAATCACGCGAGACTCTCGCTGCTAAGCTAGCGACGGCGTTGGTGAAGAT
GTTGGGATTATCCCCCGAGTGTAGAGCGGCGCTCAGAGCAGTCCGGCGAA
CCATGCGGGAGGAAACACCCGGGGCCTCGAGCGCTCATTCTTGTGCTATC
CTTTCCACCTCAGACAGTGGTGGAAACCTGGCAATAGGGTTCGGTGACCT
TCAAGAACACTACACGGTACGATCACCACGCCAGCGTGACTTGTTGGAAA
CCGAAGCGGCAATTGCAACAGTCCTTGCAACCGGCAGCGGTATGGAAAGC
AGAGAAAACGACCGCGGCATGGATAGGCCCGGTGACCGTTTGGTCGAGGA
ATCACGCGAGACTCTCGCTGCTAAGCTAGCGACGGCGTTGGTGAAGGTTA
GTACTAACGCCTTCGCCGTGTCGACGCTTCGTGGAACGGAGCCCGCAGTT
GGTAGCGTACAATCAATAAACCACACACGGGTGGCCGTTGCGCTCTACTG
CACGGCGGCGATGTTAAACCATTCCTGTGTCCCCAATGCCCTAGCCACGT
TCGACGGAGGGGAGATACGAATCGTCGCTACGCGTGATATAAAGACGGGG
GAGCCTGTGAGCATTTCCTACGGACCGTCGGCATCGAAGGCAAGTCCTGC
TTACCACGCGGCGTTTAGTGTTAGTACTAACGCCTTCGCCGTGTCGACGC
TTCGTGGAACGGAGCCCGCAGTTGGTAGCGTACAATCAATAAACCACACA
CGGGTGGCCGTTGCGCTCTACTGCACGGCGGCGATGTTAAACCATTCCTG
TGTCCCCAATGCCCTAGCCACGTTCGACGGAGGGGAGATACGAATCGTCG
CTACGCGTGATATAAAGACGGGGGAGCCTGTGAGCATTTCCTACGGACCG
TCGGCATCGAAGGCAAGTCCTGCTTACCACGCGGCGTTTAGTGTTTCGTT
GGCTTCCCAACGGCGTTCATCCCTTCGAAGCGCCTACTTCTTCCGTTGCG
GGTGCGCCGCGTGCGACCCCCCAAAAGGTAACGTGGGTAGGACTAAGACT
CACCCCGGAAGCTCGAATATTTGGCCCGGAGCCACGGCGCAATCCCATAT
CACTGAGTTTGGATGTACAGAGGCTCGGTGCCATGGGACGCTCAACGTTG
GGATGTCTCCGACGCAGTCGCCATCGTATGAAAAAGAGGTGGAAGGGCAA
AGGTTGCCGGCCGCACAAATCTCAGAGCTCCCGTCCTCGCAATCTAGTAA
GTGCCTGTTCCTTTGGTGTAACCGCTGTGGAGCTCGCTTGTCCCAGCGTT
CGACAGAAGTGCTGCTGGAGGAGGACGAAGACGACCGACGCCTTTGGGCG
GATGTATTGTTGGCGGTAGCTCGCTTAGAAGACCAATCCCGCATGGAGGA
TGGCTTAGATGAAACTAGACGCACATGTAGGCAGCAGAAATGTCTGAAGA
CGTCTGCGCCTTCAGCAGTATCATTGAGCGAGGCTGTGGCTAACTCGGCG
ACCGCGGCCAAGGATCTTGTAGTTCAACGAGTTCAGTGGCGTGACCGTCG
ACTGTCTCCTGCTTCAATGAGGCGGGCGACTGCGCACGATGTGCACGCGC
GTCTGCTTGCCATGGAAGGGAACTTCTCGAGGGCTGCCGATGCCTGTGCG
GTAGCGTTGAAAGTGCTCGCGCGGAGGTTCGCGCCGGAGGAACCGGAACT
GGGCGTCGAGTATCTTAAATTGGCTGAGCTATGCTTCAACGCGGGTCTCT
TGGAGCGATGCTTGGCGGCCTGTCAACGCGCGAGGGTTTCGCTGGACGTG
TGCCTACCGTCAAGTGACGAGCAGCTCGCGGCGTTAAGCAAAATGCAGGC
CTTGTGTGCGGCCCAACTGCGCCTTTCGGGGATATAGGTTTCGTTGGCTT
CCCAACGGCGTTCATCCCTTCGAAGCGCCTACTTCTTCCGTTGCGGGTGC
GCCGCGTGCGACCCCCCAAAAGGTAACGTGGGTAGGACTAAGACTCACCC
CGGAAGCTCGAATATTTGGCCCGGAGCCACGGCGCAATCCCATATCACTG
AGTTTGGATGTACAGAGGCTCGGTGCCATGGGACGCTCAACGTTGGGATG
TCTCCGACGCAGTCGCCATCGTATGAAAAAGAGGTGGAAGGGCAAAGGTT
GCCGGCCGCACAAATCTCAGAGCTCCCGTCCTCGCAATCTAGTAAGTGCC
TGTTCCTTTGGTGTAACCGCTGTGGAGCTCGCTTGTCCCAGCGTTCGACA
GAAGTGCTGCTGGAGGAGGACGAAGACGACCGACGCCTTTGGGCGGATGT
ATTGTTGGCGGTAGCTCGCTTAGAAGACCAATCCCGCATGGAGGATGGCT
TAGATGAAACTAGACGCACATGTAGGCAGCAGAAATGTCTGAAGACGTCT
GCGCCTTCAGCAGTATCATTGAGCGAGGCTGTGGCTAACTCGGCGACCGC
GGCCAAGGATCTTGTAGTTCAACGAGTTCAGTGGCGTGACCGTCGACTGT
CTCCTGCTTCAATGAGGCGGGCGACTGCGCACGATGTGCACGCGCGTCTG
CTTGCCATGGAAGGGAACTTCTCGAGGGCTGCCGATGCCTGTGCGGTAGC
GTTGAAAGTGCTCGCGCGGAGGTTCGCGCCGGAGGAACCGGAACTGGGCG
TCGAGTATCTTAAATTGGCTGAGCTATGCTTCAACGCGGGTCTCTTGGAG
CGATGCTTGGCGGCCTGTCAACGCGCGAGGGTTTCGCTGGACGTGTGCCT
ACCGTCAAGTGACGAGCAGCTCGCGGCGTTAAGCAAAATGCAGGCCTTGT
GTGCGGCCCAACTGCGCCTTTCGGGGATATAG
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