mRNA_H-elongata_contig53693.12724.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53693.12724.1
Unique NamemRNA_H-elongata_contig53693.12724.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.600e-24
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    4 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            MSI+LRELIR+VRACKTAAEER VVAQECA IRTAFKEEDTEFRNRNVAKLLFIHMLG
Sbjct:    1 MSIRLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
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BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A1Q9EJ89_SYMMI (AP-1 complex subunit gamma-1 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EJ89_SYMMI)

HSP 1 Score: 101 bits (251), Expect = 1.420e-23
Identity = 50/59 (84.75%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 SMSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            +MSIKLRELIRS+RACKTAAEERAV+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct: 2400 AMSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 2458
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BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A812MR36_SYMPI (Ap1g1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812MR36_SYMPI)

HSP 1 Score: 100 bits (250), Expect = 1.630e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    4 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            MSIKLRELIRS+RACKTAAEERAV+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 58
[Close]
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A813L6Y0_POLGL (AP-1 complex subunit gamma n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L6Y0_POLGL)

HSP 1 Score: 100 bits (250), Expect = 1.930e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    4 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            MSIKLRELIRS+RACKTAAEERAV+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 58
[Close]
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A482RW17_9ARCH (Adaptin_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW17_9ARCH)

HSP 1 Score: 96.7 bits (239), Expect = 2.950e-23
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            MSIKLR+LIR+VRACKTAAEERAV+++ECALIRTA KEED +FR RNVAKLLFIHMLG
Sbjct:    1 MSIKLRDLIRAVRACKTAAEERAVISKECALIRTAIKEEDEQFRQRNVAKLLFIHMLG 58
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BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A7S1F0P5_NOCSC (AP-1 complex subunit gamma n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F0P5_NOCSC)

HSP 1 Score: 98.6 bits (244), Expect = 1.250e-22
Identity = 48/58 (82.76%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    4 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            MSIKLRELIRS+R+CKTAAEER+V+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:   20 MSIKLRELIRSIRSCKTAAEERSVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 77
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BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A662XRJ5_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRJ5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.300e-22
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            MS KLR+LIRSVRACKTAAEERAV+A+E ALIRTAFK++D ++R+RNVAKLLFIHMLG
Sbjct:    1 MSQKLRDLIRSVRACKTAAEERAVIAKESALIRTAFKDQDKQYRHRNVAKLLFIHMLG 58
[Close]
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A7S2LMT4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LMT4_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 2.770e-22
Identity = 44/52 (84.62%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:   22 ELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            ELIRS+RACKTAAEERAV+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 ELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 52
[Close]
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A2R5G3X0_9STRA (AP-1 complex subunit gamma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3X0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.190e-22
Identity = 49/58 (84.48%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    4 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            MSIKLR+LIR+VRACKTAAEERAV+A+ECALIRT+FK+ED  FR+RNVAKLLFIHMLG
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKECALIRTSFKDEDATFRHRNVAKLLFIHMLG 58
[Close]
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A0G4ELK5_VITBC (AP-1 complex subunit gamma n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELK5_VITBC)

HSP 1 Score: 97.1 bits (240), Expect = 4.350e-22
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 177
            MSIKLRELIR++RACKTAAEERAV+A+ECA IRTAFKEED  +R+RNVAKLLFIHMLG
Sbjct:    1 MSIKLRELIRNIRACKTAAEERAVIAKECAEIRTAFKEEDNHYRHRNVAKLLFIHMLG 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP4_ECTSI1.600e-2493.10AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A1Q9EJ89_SYMMI1.420e-2384.75AP-1 complex subunit gamma-1 n=2 Tax=Symbiodinium ... [more]
A0A812MR36_SYMPI1.630e-2386.21Ap1g1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A813L6Y0_POLGL1.930e-2386.21AP-1 complex subunit gamma n=2 Tax=Polarella glaci... [more]
A0A482RW17_9ARCH2.950e-2384.48Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A7S1F0P5_NOCSC1.250e-2282.76AP-1 complex subunit gamma n=1 Tax=Noctiluca scint... [more]
A0A662XRJ5_9STRA1.300e-2281.03Adaptin_N domain-containing protein n=1 Tax=Nothop... [more]
A0A7S2LMT4_9DINO2.770e-2284.62Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A2R5G3X0_9STRA3.190e-2284.48AP-1 complex subunit gamma n=1 Tax=Hondaea ferment... [more]
A0A0G4ELK5_VITBC4.350e-2284.48AP-1 complex subunit gamma n=2 Tax=Vitrella brassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53693contigH-elongata_contig53693:917..1093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue2.9e-21
Seed eggNOG ortholog2880.D7FHP4
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.3341138-CDS-H-elongata_contig53693:916..10901622930875.3341138-CDS-H-elongata_contig53693:916..1090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53693 917..1090 -
1691679607.1999135-CDS-H-elongata_contig53693:916..10901691679607.1999135-CDS-H-elongata_contig53693:916..1090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53693 917..1090 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.3507187-UTR-H-elongata_contig53693:1090..10931622930875.3507187-UTR-H-elongata_contig53693:1090..1093Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53693 1091..1093 -
1691679607.2146099-UTR-H-elongata_contig53693:1090..10931691679607.2146099-UTR-H-elongata_contig53693:1090..1093Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53693 1091..1093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53693.12724.1prot_H-elongata_contig53693.12724.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53693 917..1090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53693.12724.1

>prot_H-elongata_contig53693.12724.1 ID=prot_H-elongata_contig53693.12724.1|Name=mRNA_H-elongata_contig53693.12724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAK
LLFIHMLG
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mRNA from alignment at H-elongata_contig53693:917..1093-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53693.12724.1 ID=mRNA_H-elongata_contig53693.12724.1|Name=mRNA_H-elongata_contig53693.12724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig53693:917..1093- (Himanthalia elongata Himel1 dioecious)
AGTATGTCGATAAAGCTTCGGGAGCTCATCCGCTCGGTGCGCGCGTGCAA
GACAGCGGCGGAGGAGCGAGCGGTTGTTGCACAGGAGTGCGCCCTGATCC
GAACGGCATTCAAAGAGGAAGACACCGAGTTCAGGAACAGGAATGTCGCC
AAGCTTCTCTTCATCCACATGCTCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig53693:917..1093-

>mRNA_H-elongata_contig53693.12724.1 ID=mRNA_H-elongata_contig53693.12724.1|Name=mRNA_H-elongata_contig53693.12724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig53693:917..1093- (Himanthalia elongata Himel1 dioecious)
ATGTCGATAAAGCTTCGGGAGCTCATCCGCTCGGTGCGCGCGTGCAAGAC
AGCGGCGGAGGAGCGAGCGGTTGTTGCACAGGAGTGCGCCCTGATCCGAA
CGGCATTCAAAGAGGAAGACACCGAGTTCAGGAACAGGAATGTCGCCAAG
CTTCTCTTCATCCACATGCTCGGTATGTCGATAAAGCTTCGGGAGCTCAT
CCGCTCGGTGCGCGCGTGCAAGACAGCGGCGGAGGAGCGAGCGGTTGTTG
CACAGGAGTGCGCCCTGATCCGAACGGCATTCAAAGAGGAAGACACCGAG
TTCAGGAACAGGAATGTCGCCAAGCTTCTCTTCATCCACATGCTCGGT
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