mRNA_H-elongata_contig5365.12721.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5365.12721.1
Unique NamemRNA_H-elongata_contig5365.12721.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: D8LS71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS71_ECTSI)

HSP 1 Score: 481 bits (1239), Expect = 7.190e-166
Identity = 238/312 (76.28%), Postives = 263/312 (84.29%), Query Frame = 2
Query:  104 IRRLTGPWGSIAIAGVVAYLAAICIFWETFRSYFAWSEAWAITVVDGLPRLSVLDLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGV-VLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYLSPEAAFPLSWLGSWSVAHGGGPSTEAAAMVAVYVTANHLLDYFIPDY-EDPLCVAFKWCLKLLGVTSMVNPA 1033
            +  + G    + +AGV  Y+A    FW  FR YF W+E+ AI+  DGLPRLSVLDLFGS+LTCQ+YR +A+FPKHAVETLVACSLMQFGGTFLVGV VLGQTPSW+ SFTAWPALA+ WWLTFFSPWD WHGRA  +KA +F+AAFGRAVSASHAITSWGADKALTAHFEKA+MSA CTILCG LAGCGGGILADLLNL+GDSW LQRTP ALASPSFSVQRCFGASCLYY+LADPHGYLS EA FPLS LG  SV HG GPSTEAAAMVAVYVTANHL+DYFIP Y +DPLC  F   L LLGV +MV+P+
Sbjct:   29 VSTMMGSLDPLVVAGVAVYVATAYAFWGIFREYFDWTESLAISFKDGLPRLSVLDLFGSILTCQAYRGMAKFPKHAVETLVACSLMQFGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDLWHGRAMSNKACMFLAAFGRAVSASHAITSWGADKALTAHFEKAKMSAICTILCGTLAGCGGGILADLLNLDGDSWNLQRTPQALASPSFSVQRCFGASCLYYLLADPHGYLSEEAPFPLSLLGRLSVDHGNGPSTEAAAMVAVYVTANHLMDYFIPRYNQDPLCKLFSVILGLLGVRAMVDPS 340          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A482SCI6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCI6_9ARCH)

HSP 1 Score: 141 bits (355), Expect = 3.020e-34
Identity = 95/244 (38.93%), Postives = 131/244 (53.69%), Query Frame = 2
Query:  140 IAGVVAYLAAICIFWETFRSYFA-------WSEAWAITV--VDGLPRLSVLDLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKAL--TAHFEKARMSAG---CTILCGILAGCGGGILADLLNL--EGDSWKLQRTPGALA----SPSFSVQRCFGASCLYYVLADPH 811
            + G V   AA+  F+  F  + A       + E+  + V  V  LP +S+LD FGS   C++YRR     K   E LVAC+LMQFGGT + G +LGQTPSWI S +A+PA+AL WWLTF+ P D +      +  ++FV     AVS++HA++SWG DKAL    H  K  +S     CT L G  +  GGGIL D+L       S+   RTP          S ++ +    + +YY L +PH
Sbjct:   24 VLGYVLLGAALLSFYFQFDDFRANVDYLNEYLESATVVVPFVPYLPPISILDFFGSACVCRTYRRNVEGRKSWFEVLVACTLMQFGGTTITGFLLGQTPSWIMSKSAFPAMALAWWLTFYCPGDVFWKAIKNNSILLFVLGMFGAVSSAHAVSSWGVDKALFNAFHVNKEGISKAYMVCT-LSGAFSASGGGILTDVLGFFRPNKSFVPFRTPSLFMIDFYEASATINKALLLAVVYYSLVNPH 266          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S0E304_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E304_9CRYP)

HSP 1 Score: 130 bits (328), Expect = 1.930e-30
Identity = 84/216 (38.89%), Postives = 122/216 (56.48%), Query Frame = 2
Query:  185 ETFRSYFAWSEAWAITVVDGLPRLSVLDLFGSVLTCQSYRRVARFPKHA-VETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKAL-TAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDS--WKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYL 820
            +  +  F  SE+WAI ++      S LDL  ++ TC SYRR     KH  ++  ++C++  FGGT +  + LGQ P W+ S ++  A  L +WL F  P +  +   +RH++V  V  +  + S  HA +SWGAD AL +AH      S    I CG++AGCGGGILA+ L + G S  W    TP  L  PS +V+  F ASC+YY+L +PH +L
Sbjct:   26 DGLQEIFLESESWAIPLLPF--HSSFLDLILALDTCASYRRHMGKNKHPWLQVFISCAVGTFGGTTVAALFLGQPPGWMGSLSSPFAFLLAFWLIFCCPGNVPYKIISRHRSVELVFGYINSFSCGHATSSWGADGALNSAHMVVG--SGPMAIFCGMIAGCGGGILANWLGMIGKSSDWMFG-TPPVLKGPSITVRTAFFASCIYYLLRNPHEFL 236          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: F0Y383_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y383_AURAN)

HSP 1 Score: 125 bits (314), Expect = 9.230e-27
Identity = 112/289 (38.75%), Postives = 144/289 (49.83%), Query Frame = 2
Query:   20 ARVDGGAQQKDGAGENNDD-ERDETLSKGIR-RLTGPWGSIAIAGVVAYLAAI-CIFWETFRSYFAW-----SEAWAIT--VVDGLP---RLSVLDLFGSVLTCQSYRR--VARFPKHA-VETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYLSPEAAF 838
            A++  GA Q  G G   DD E    +S+ IR R T      + A VVA  AA+ C    T R+  AW     S ++ +   V   LP   R S LD FGSV+ C  YRR   A    H     L   +LMQFGGT LVG++LGQ PSW  S  A  +L L +WLT+  P D W         +    A G A+S+ HAITSWG DKAL A   +A+ +    ++ G L   GGG+LA LL+  G+    QR+ GA         R    S  YY+L DPHG L+ E  +
Sbjct:  786 AKLAAGATQT-GRGMRADDLEMRAAISETIRERFTSRDVVASPAAVVALGAALFCCAQRTARAA-AWYGALESHSFLLPPIVAKALPAWVRFSTLDFFGSVVCCADYRRRLEAAGQSHPWFAALATSTLMQFGGTTLVGLLLGQPPSWTLSHNAPRSLLLAFWLTWSCPGDLWTTAYRNSFVLRLFFATGAALSSGHAITSWGQDKALNAFHVQAQGAVFSALIAGALGASGGGLLAALLDPFGERPVGQRSYGAFL-------RAAVGSVAYYLLRDPHGVLADEYGY 1065          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A8J2SHU2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHU2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.900e-26
Identity = 90/253 (35.57%), Postives = 127/253 (50.20%), Query Frame = 2
Query:  137 AIAGVVAYLAAICIFWETFRSYFAWSEAWAITVVDGLP-----------RLSVLDLFGSVLTCQSYRRVARFPKHAVET-----LVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGA--SCLYYVLADPHGYLSPEAAFP 841
            A A ++A L A  +  +    Y A  + +A       P           R S +D FGS + C ++R  AR  ++  +T     L  C LMQFGGT LVG++LGQ  SW TS TA  +L L +WL+   P D ++ R  +HK +  + A G A+S  HA+TSWGADKA++A   K R S   T++ G     GGG+    L+L G+     R  G   S +  +   FGA  S  YY++ +PHG    E   P
Sbjct:   28 ASAIIIALLVATALMEDAPPGYDAMVDFYAACESHAFPIIGITDTITWLRFSTMDFFGSTVCCCAFR--ARLEQNKQKTPWFLALACCCLMQFGGTTLVGLLLGQPASWTTSPTACRSLLLAFWLSVSCPLDLFY-RMYQHKIIKSMIAIGAALSTGHAVTSWGADKAISAIHPKPRSSVFSTLMAGAFGASGGGLSVHALDLWGE-----RRRGKERSYAAFL---FGAVASVSYYLMRNPHGVFEYEPLAP 269          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S0W3X9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W3X9_9CRYP)

HSP 1 Score: 112 bits (279), Expect = 2.200e-23
Identity = 78/206 (37.86%), Postives = 100/206 (48.54%), Query Frame = 2
Query:  257 SVLDLFGSVLTCQSYRRV----------ARFPKHAVETLV------ACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYLSP 826
            S+LD  GS + C SYR            A   K++    V       C   QFGGT    V+LGQ PSW        A  L WWLTF SP D W   A + +AV         +SA+HA+TSWG +KAL+A   + R SA   + CG L+GC G  L       G+  +L R       PS+++QR F A   YY L +PHG L+P
Sbjct:  120 SLLDFAGSAMVCFSYRTATERSIAEGDAAACRKNSSPLAVYAYGIFICLFSQFGGTTSTAVLLGQNPSWAAGNHVTNAFLLAWWLTFCSPGDVWF-EAMKLRAVRLPLQAVACISAAHAVTSWGLEKALSAEHTRMRGSAWGALACGYLSGCFGWPLVAFFETGGE--RLTRL-----GPSWAMQRTFYAVLAYYALTNPHGTLTP 317          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S2DJ93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJ93_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.320e-22
Identity = 48/109 (44.04%), Postives = 71/109 (65.14%), Query Frame = 2
Query:  167 AIC-IFWETFRSYFAWSEAWAITVVDG----LPRLSVLDLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSP 478
            A+C ++W+ +   + W  + ++          PRLSV DLFGS L C  YR   +  K+ +ETLV C+L+QFGGT    ++LGQ+PSW++S TA+P+L +CWWL+FF P
Sbjct:   19 AVCYLWWDPYVELYEWFGSASLPTCPESFWHCPRLSVADLFGSCLVCYGYRTSLKTTKYWLETLVVCTLLQFGGTTCTALILGQSPSWLSSATAFPSLLVCWWLSFFCP 127          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S4FA57_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FA57_CHRCT)

HSP 1 Score: 100 bits (250), Expect = 3.310e-20
Identity = 73/247 (29.55%), Postives = 108/247 (43.72%), Query Frame = 2
Query:   86 ETLSKGIRRLTGPWGSIAIAGVVAYLAAICIFWETFRSYFAWSEAWAITVVDGLPRLSVLDLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYLSP 826
            + +S   R     W +     +V  +    + W+              T+  G+    VLDL   +     +R  A  P+   + +VA  L   GG+ ++  ++GQ   W+      PA  + W L   SP D  +   +R  AV  V      ++   AIT+WG +K + A     R SA   ILCG +AGCGGG+L D  +L    WKL +TP AL + SF+         L Y L DPH  +SP
Sbjct:    1 DLMSSRARAAMATWAAXXATALVLSMLLSSVTWQQTLK----------TLTFGMGAWPVLDLIHGLAVAFDFRTSAS-PQGGPQRIVAICLTSLGGSMIMCFLVGQPCGWLCDNVTLPAYIVAWALLHHSPNDIVYRVFSRSPAVATVLRMLDDLTWGVAITTWGMEKTIGAAHLAPRGSAVAAILCGTIAGCGGGLLCDTASLMSTEWKL-KTPQALRTVSFAPTTALCCCVLAYALRDPHNVVSP 235          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A5A8CI99_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CI99_CAFRO)

HSP 1 Score: 80.9 bits (198), Expect = 1.610e-12
Identity = 59/188 (31.38%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  206 AWSEAWAITVVDGLPRLSVL----DLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSW----HGRATRHKAVVFVAAFGRAVSASHAITSWGADKALT---AHFEKARMSAGCTI--LCGILAGCGGGILADLLNLEGDSWKLQRTP 730
            AW  A+   V D + RL+ +    DL GS      YR   R P    ++L+   ++ FGGT + G++ G++PSW+TS+ +  A+ + W+LTFF P+D W    +        VVF      ++S ++ I + G  K L     HF     +    +  +CGI++GCGGG+L++  N   D     R P
Sbjct:   24 AW-HAYTAAVSD-IARLAFIVQLTDLIGSARVAAWYRVNVRRPVSWHQSLLVVLIVHFGGTTMTGIMTGKSPSWVTSYESLLAVIVSWYLTFFCPFDLWWRVYNVPWVNRACVVF-----ESISLANGIGNLGVGKVLDHSRGHFAHPGTAPSPVLGWVCGIMSGCGGGVLSEFANFVDDPTPHSRRP 204          
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S0UDZ5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UDZ5_HEMAN)

HSP 1 Score: 74.7 bits (182), Expect = 1.240e-11
Identity = 47/131 (35.88%), Postives = 60/131 (45.80%), Query Frame = 2
Query:  257 SVLDLFGSVLTCQSYRRVARFP----------------KHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTA 601
            S+LD  GS + C SYR   +                   H V  +  C   QFGGT    + LGQ  SW        A  L WWLTF  P D W   A +++A+         VSA+HA+TSWG +KAL+A
Sbjct:   92 SLLDFAGSAMVCFSYRTATQKAIADGDEALCRKHSSPLAHYVYGIFTCLFSQFGGTTSTAIFLGQNASWTAGNHVTNAFLLAWWLTFCCPMDLWF-TAMQYRAMRLPVQAVACVSAAHAVTSWGLEKALSA 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LS71_ECTSI7.190e-16676.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482SCI6_9ARCH3.020e-3438.93Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0E304_9CRYP1.930e-3038.89Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
F0Y383_AURAN9.230e-2738.75Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SHU2_9STRA1.900e-2635.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0W3X9_9CRYP2.200e-2337.86Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2DJ93_9STRA2.320e-2244.04Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4FA57_CHRCT3.310e-2029.55Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A5A8CI99_CAFRO1.610e-1231.38Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S0UDZ5_HEMAN1.240e-1135.88Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5365contigH-elongata_contig5365:5767..10087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.4
Seed ortholog evalue1.2e-102
Seed eggNOG ortholog2880.D8LS71
EggNOG OGs2E2XU@1,2SA3S@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTRIC channel
Ec32 orthologEc-12_004610.1
Exons7
Model size1491
Cds size726
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930874.7708127-UTR-H-elongata_contig5365:5766..61731622930874.7708127-UTR-H-elongata_contig5365:5766..6173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5365 5767..6173 -
1691679606.99211-UTR-H-elongata_contig5365:5766..61731691679606.99211-UTR-H-elongata_contig5365:5766..6173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5365 5767..6173 -
1622930874.8965468-UTR-H-elongata_contig5365:8882..90021622930874.8965468-UTR-H-elongata_contig5365:8882..9002Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5365 8883..9002 -
1691679607.0637386-UTR-H-elongata_contig5365:8882..90021691679607.0637386-UTR-H-elongata_contig5365:8882..9002Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5365 8883..9002 -
1622930874.910417-UTR-H-elongata_contig5365:9849..100871622930874.910417-UTR-H-elongata_contig5365:9849..10087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5365 9850..10087 -
1691679607.0722606-UTR-H-elongata_contig5365:9849..100871691679607.0722606-UTR-H-elongata_contig5365:9849..10087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5365 9850..10087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930874.7878716-CDS-H-elongata_contig5365:6173..62991622930874.7878716-CDS-H-elongata_contig5365:6173..6299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 6174..6299 -
1691679607.0034451-CDS-H-elongata_contig5365:6173..62991691679607.0034451-CDS-H-elongata_contig5365:6173..6299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 6174..6299 -
1622930874.8228006-CDS-H-elongata_contig5365:6957..70831622930874.8228006-CDS-H-elongata_contig5365:6957..7083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 6958..7083 -
1691679607.0121217-CDS-H-elongata_contig5365:6957..70831691679607.0121217-CDS-H-elongata_contig5365:6957..7083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 6958..7083 -
1622930874.8406894-CDS-H-elongata_contig5365:7336..74751622930874.8406894-CDS-H-elongata_contig5365:7336..7475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 7337..7475 -
1691679607.021079-CDS-H-elongata_contig5365:7336..74751691679607.021079-CDS-H-elongata_contig5365:7336..7475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 7337..7475 -
1622930874.855608-CDS-H-elongata_contig5365:7757..78611622930874.855608-CDS-H-elongata_contig5365:7757..7861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 7758..7861 -
1691679607.0305011-CDS-H-elongata_contig5365:7757..78611691679607.0305011-CDS-H-elongata_contig5365:7757..7861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 7758..7861 -
1622930874.8676803-CDS-H-elongata_contig5365:8346..85671622930874.8676803-CDS-H-elongata_contig5365:8346..8567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 8347..8567 -
1691679607.0393088-CDS-H-elongata_contig5365:8346..85671691679607.0393088-CDS-H-elongata_contig5365:8346..8567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 8347..8567 -
1622930874.8813963-CDS-H-elongata_contig5365:8872..88821622930874.8813963-CDS-H-elongata_contig5365:8872..8882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 8873..8882 -
1691679607.0522285-CDS-H-elongata_contig5365:8872..88821691679607.0522285-CDS-H-elongata_contig5365:8872..8882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5365 8873..8882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5365.12721.1prot_H-elongata_contig5365.12721.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5365 6174..8882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5365.12721.1

>prot_H-elongata_contig5365.12721.1 ID=prot_H-elongata_contig5365.12721.1|Name=mRNA_H-elongata_contig5365.12721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
MQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATR
HKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILA
GCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADP
HGYLSPEAAFPLSWLGSWSVAHGGGPSTEAAAMVAVYVTANHLLDYFIPD
YEDPLCVAFKWCLKLLGVTSMVNPARIPGIDANVPNKEKAA*
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mRNA from alignment at H-elongata_contig5365:5767..10087-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5365.12721.1 ID=mRNA_H-elongata_contig5365.12721.1|Name=mRNA_H-elongata_contig5365.12721.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4321bp|location=Sequence derived from alignment at H-elongata_contig5365:5767..10087- (Himanthalia elongata Himel1 dioecious)
GGGACCTTCAAGCATCGACGCCAGAGTCGACGGCGGCGCGCAGCAAAAAG ACGGCGCTGGAGAGAACAATGACGACGAACGTGACGAGACCCTTTCCAAG GGCATCCGACGCCTAACGGGACCGTGGGGGTCCATCGCGATAGCGGGGGT AGTGGCATACTTGGCCGCGATCTGCATTTTCTGGGAGACGTTTAGGTCGT ACTTTGCATGGTCCGAGGCTTGGGCGATCACCGTTGTGGTATGAAGTATT TCTATTATCTTGTGTTTTCTTTAATCCGTTCTGCGTCTCTGGCCATTTTG CTAGCAAGGACCCTTTTAGCACATTGCCGTAAAAGAGGTGGCATATTTCA AAGGCGTATTCCGAGAGAATGCGTGCGATGAGCATTCTGGGTCCATGCTT GGGGGTGTATTTCCGATACATATTTCTTGGGTTGAGCAAAGTTTTTTTTT TTTTTAAACTGCGGGGTACCTTTTATATGGTATATAAGGAAAGTTTTTGC TCGGAGGTTCTTGATCTAGACCGTTGCGCTTAGGGCAGGTCTTATCGGAA TACAAAAATCTAAATTTTTAGCCGATTTAAATTAAAATCGGACTCTGATT GGTTGAAAGCTAAATAATGCCTAGCCTTTGTCCAACCAAAGCCCGATTTC AATTTAAACCGTCTGGAAGTATAATTTTTTGTATTCCGATAAGACCCGGC CTTACCTTTGTCCAGAATCGGTTTCTTGTTCGTTATAAGTGTGCGTCACC TCCGACGGGTTAAAGCAAAGCAAAGCAACGATTACTATTACTATTAGTCT TTGGCTATGTCTCCACAGCACGCTTTACTGTGTCCAGACGGATTCAGCCA CGGTTAGCTCACAAAACAATCTGACGGCTGCGCGGATGCGGCAACCCCGA TATAAACGCGCGAGCTCACGACGAAAACATATAATCGCTGCTGATACCCC CCCCTAAAATGAGACGGTTCGACTCTCATGTCATAGTACCAGCGCTTGAT CCAGCCTCCCCCGTGTATCTCCCATGCTTCCCCTTCCCCGCCTTGATTTG CCTTCACGTCGTGTCGAGACACCCCTATAAAATAGGACGGGCTCCCGCGG CTCTCTGTCCTTGATCTGTTCGGGTCTGTGTTGACGTGCCAGTCCTACAG ACGTGTAGCGCGATTCCCCAAGCACGCCGTGGAAACACTCGTGGCTTGCT CGCTTATGCAGTTCGGTGAGTCTTGCTCGAGTGCTCGAGCGAGCGCCGGG ATGGTTAATGTTGACGTGCCTCGAGAGCTTTGTCTACCGTAAAAAAAAAA GGCTATTCGTTTGTTGTTATTTGAAGTCTGCATGTTTGGAGCGGCGCACT AGAGGTGACCGCTTCAGGAGCGTGTGTATCACACATAAAAAGACATAAGA CAGTCCCCTCCAGGAGCAAGCATGCATCGCAAGGTCTTCAATCCCCTTAG ACTAAATACACATTTCGCACTCAACTCGCCTTCCTCCCACGCCCCCACCC CCCGTAACCAAAATTCGAAGGCGGCACGTTCTTGGTCGGCGTGGTACTCG GTCAGACCCCGTCCTGGATAACTTCCTTTACCGCTTGGCCCGCGCTGGCG TTGTGTTGGTGGCTCACGTTTTTCTCGCCGTGGGACTCGTGGCACGGGCG CGCTACGAGGCACAAGGCGGTGGTGTTCGTTGCGGCGTTCGGGCGGGCCG TGTCTGCCTCCCACGCCATCACATCTTGGGGGGCAGACAAGGTGACAAGC GCATCGGCCAATTGGCGCTCGGGAGGAGACGTGGGGTGGGGGGAGAATTT CGAGATCGATGATTGATCCTCACGGTCCGAATTTGTCCGGTTGCAGAGTC AATATACCCCGTGGCAAACCCCACAGGTTTGCTGGGGACTGGAGTTTGGT AACAAATTGTCCTCAGTTTATATCGTTACATTGCCACATGAAGATATTAG AAACCCCGACGACGCTGTTGTCAGGAGTGTTAAAGATCCTAAAGTGTGGC TGCGGCCGGCTGCGCACAGTCGAGGTTTTAAAATATGGGGTGGTTTTTTC TCGGGTTGGACGAGAAGCACGCCCGTGTCGGCGGAAGGAATCGAGGGCCC CGACGCTTTTGCGAGACCTTCAACCCTCGCGCCCGCCACGTTCCGGTCGA GCTGTCCTAATCTCCACTCTAGCTGTACGCTCTGATTCTTGATTCGTTGA CGGTGCGCGCGGAACCACGACCGCAGGCCCTAACGGCGCACTTTGAGAAG GCCAGGATGTCGGCGGGCTGCACCATCCTGTGCGGCATCCTCGCCGGGTG CGGCGGTGGCATTTTGGCTGACCTTCTCAAGTAAGACGGCGTCTGCGACG GCAATATATCATACGATGATCTCACCGTACACCGAAGTACTCGGTACCCC GAAATCTTGACCCGTTCGCCAAAGCATGGTGACTGGTCGGAATACCCGAA CGACTGACTGGGTCGGGGCATAGATGTGCGTATTATCCTCTGTCTGTTTT TTTTCTCGATCCGCGATATTGTGCCGAATAAAGCACGACCCGAGCACATA CTTCCGCGGCCGCCGAGCCTCTCACCGGGACGTCCTTGCGTCGCGCTATA CGCCCCCCGCAGTCTTGAGGGCGACTCTTGGAAACTTCAGCGCACCCCCG GAGCGCTGGCGTCTCCGTCATTCTCAGTACAGCGCTGCTTCGGGGCGTCG TGTCTCTACTACGTCCTCGCGGACCCTCACGGCTATCTCTCCCCAGAAGC GGTGTGCGGCACGAAAGACCAAAGGATCTAGGGAAGAAACATTACTATGC TGCTGTAGGTGGTTGGTGTTGCGTCGCACGTTTGGGGCGTGAGGGACATC CTTCAGTGTTCAGCCCGTAGCTCGTTATAAAGCTTACATGATGGTTCTTG CCTATGCCCATCAGCCCCTCCAAGCCGTTCTCTCATGTATAAACATGTGT GTGTGTGTGTTTGTGTTTCCCCACCCCATATTTGGTGCTGATAATACAAC ACAGGCATTCCCGCTCTCGTGGCTGGGCTCCTGGTCGGTGGCTCACGGCG GTGGACCATCCACGGAGGCGGCGGCGATGGTCGCTGTCTACGTCACGGCC AACCACTTGTTGGATTACTTTATTCCAGACGTGAGAAAGAGGCAACATCG GTTACCACGTGTGTTTTGTCATCATCACATATAATAGGAGATTAGTATGG ATAAACCGGACATCGTTGCCTATCCTGCTCGTGGTCATGACGTCAGCTGA ACAGGGAAAATGAAGTTTCCTTGTCCTCATCTGCGCCCGAGAATTTGTGT GGTCATGACGTCATCAAATATAGCAGAGTATAGATCAACCGGATTTGCTT GCCTCCTGCTTGTGGTCAGCTGAACAGACAAAATAGTTTTCCATGTCCCC GTTCGCGCCTGATAATTTTATCTCGCGAGACGGGTTCGGTCGTGCCCGAT ATTTTGTATGCTGTGACGACACCCGGGTTATTGCTACTTTAGGCCTTAAG CGTGAGTGCCGACGGTGCGAGGTGCTGAATTGCCGAGAAATCGTCGGCCC CTTGAGGCGACACTACGAGCAGGACCGGGCGTGTTCGAGTTTCCGTGGCT GACGAGATAACGCAAAAGAAGAGCGGGACATTTTTTCGTAAGCGGGGGAA ATGCCATCTACCACAAAACAATGATTTGTTTAATGGTAGTTATGATACCC TCGCCGGTATTTGGTTCGTGATGGAACGAACCCGCCCGCATCCTATCCGT CCTCCCTGCCCCCTATTACCATGGCGCGCCTGATCCAGTATGAAGATCCG CTGTGCGTGGCGTTCAAGTGGTGCCTGAAGCTGCTCGGAGTTACCTCGAT GGTGAACCCTGCGCGCATCCCTGGCATCGACGCCAACGTCCCTAACAAGG AGAAGGCCGCATGAGCGCCGACGATCGTGGTCTCGGAGCCGCCACGGATT CGATGGAGCCCCTGGTCGAACGCCGACCAAACGATTTTTTTCTCCTCCTT CGGTCTATCTTGGTTACGGCCCCGTAACCCGGATCATACGACTATTTAAC AAGGATGTCCTCTGCGGAAACAATTAAGCACGATAAGGCTTTGGGGATAC ATAGATACATAGGCGTGGTCGTGGTGGTGGTCGTGACCGTTACATTATTC ATGGGTCTGGTATAAAGTGTCTTGCGGCGAAATGTTTCGTTCGCGCTGTC TGTCTTACACGCACGCATGTTAGGAAAAGTGGGTCCCCGAGAAAGCGGGG AGGGGGGGGAGAGATGCATTGCGTTGCACAGGAATGACCTGCACCTGCTG CTGTCGCTGATTCTCGTACGC
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Coding sequence (CDS) from alignment at H-elongata_contig5365:5767..10087-

>mRNA_H-elongata_contig5365.12721.1 ID=mRNA_H-elongata_contig5365.12721.1|Name=mRNA_H-elongata_contig5365.12721.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig5365:5767..10087- (Himanthalia elongata Himel1 dioecious)
ATGCAGTTCGATGCAGTTCGGCGGCACGTTCTTGGTCGGCGTGGTACTCG
GTCAGACCCCGTCCTGGATAACTTCCTTTACCGCTTGGCCCGCGCTGGCG
TTGTGTTGGTGGCTCACGTTTTTCTCGCCGTGGGACTCGTGGCACGGGCG
CGCTACGAGGCACAAGGCGGTGGTGTTCGTTGCGGCGTTCGGGCGGGCCG
TGTCTGCCTCCCACGCCATCACATCTTGGGGGGCAGACAAGGCGGCACGT
TCTTGGTCGGCGTGGTACTCGGTCAGACCCCGTCCTGGATAACTTCCTTT
ACCGCTTGGCCCGCGCTGGCGTTGTGTTGGTGGCTCACGTTTTTCTCGCC
GTGGGACTCGTGGCACGGGCGCGCTACGAGGCACAAGGCGGTGGTGTTCG
TTGCGGCGTTCGGGCGGGCCGTGTCTGCCTCCCACGCCATCACATCTTGG
GGGGCAGACAAGGCCCTAACGGCGCACTTTGAGAAGGCCAGGATGTCGGC
GGGCTGCACCATCCTGTGCGGCATCCTCGCCGGGTGCGGCGGTGGCATTT
TGGCTGACCTTCTCAAGCCCTAACGGCGCACTTTGAGAAGGCCAGGATGT
CGGCGGGCTGCACCATCCTGTGCGGCATCCTCGCCGGGTGCGGCGGTGGC
ATTTTGGCTGACCTTCTCAATCTTGAGGGCGACTCTTGGAAACTTCAGCG
CACCCCCGGAGCGCTGGCGTCTCCGTCATTCTCAGTACAGCGCTGCTTCG
GGGCGTCGTGTCTCTACTACGTCCTCGCGGACCCTCACGGCTATCTCTCC
CCAGAAGCGTCTTGAGGGCGACTCTTGGAAACTTCAGCGCACCCCCGGAG
CGCTGGCGTCTCCGTCATTCTCAGTACAGCGCTGCTTCGGGGCGTCGTGT
CTCTACTACGTCCTCGCGGACCCTCACGGCTATCTCTCCCCAGAAGCGGC
ATTCCCGCTCTCGTGGCTGGGCTCCTGGTCGGTGGCTCACGGCGGTGGAC
CATCCACGGAGGCGGCGGCGATGGTCGCTGTCTACGTCACGGCCAACCAC
TTGTTGGATTACTTTATTCCAGACGCATTCCCGCTCTCGTGGCTGGGCTC
CTGGTCGGTGGCTCACGGCGGTGGACCATCCACGGAGGCGGCGGCGATGG
TCGCTGTCTACGTCACGGCCAACCACTTGTTGGATTACTTTATTCCAGAC
TATGAAGATCCGCTGTGCGTGGCGTTCAAGTGGTGCCTGAAGCTGCTCGG
AGTTACCTCGATGGTGAACCCTGCGCGCATCCCTGGCATCGACGCCAACG
TCCCTAACAAGGAGAAGGCCGCATGATATGAAGATCCGCTGTGCGTGGCG
TTCAAGTGGTGCCTGAAGCTGCTCGGAGTTACCTCGATGGTGAACCCTGC
GCGCATCCCTGGCATCGACGCCAACGTCCCTAACAAGGAGAAGGCCGCAT
GA
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