mRNA_H-elongata_contig53625.12717.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: D7FVL7_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL7_ECTSI) HSP 1 Score: 295 bits (756), Expect = 1.130e-88 Identity = 175/392 (44.64%), Postives = 205/392 (52.30%), Query Frame = 1
Query: 1 LIAAAWESAV--FANSYHAIQLKGLEALFNSTNGEQWIWSTGWLDAALGVCGWYGVTCYDNGDNVTGLALPDNGLVGNLSKAEQLFDMTSLQSLDLSGNKLVGSVALGFGLMPKLETLDLSRNQLSSFPENWGLGASSLQHLLLQHNNISGTLPSAWINLNTSKSHPLVHVEEFSRWLPELRTLSLGSNQITMTVYLALQSVIGLPSLQALDLSGNALGGELNAAFDLYHCEGGSLSNCDSTLHNSRAPSLTTLLLASNAIEGTLEADALPKSLFVFSVSDNHLYGPVPEDYSQLSVFFAEGNEGLNDTLLPSFASYVNNSAVVVSHENLSCPVITGNIAGGTTMRLRLDPSYIDYIHCVCVKGMEFNSDGGCQPCAAGTYRSYTELFTSPS 1170
L+AA W ++SY Q GLEAL+N+T GEQW S+GW DA LGVC WYGV C +G NVTGLAL NGL GNLS+A +LFD+ SL S+DLS N+LVG VALGFGLMP LE LDLSRN LS FP +WG ASSL+HL LQ N ISG IEG LE + P+SL +VSDN L GPVPED +QLSVF A+GNEGLNDT LPSFASY N+S VV H N+SCPVI+G G + L LDPSY+ Y HCVC+KGM+ N++ GCQ C GTYR +LF + S
Sbjct: 14 LLAAQWIRGAGGVSSSYLETQQVGLEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLAGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNDLSYFPTSWGTEASSLRHLSLQQNEISG-------------------------------------------------------------------------------------------------------------IEGELETHSFPRSLSALTVSDNLLTGPVPEDCAQLSVFLADGNEGLNDTSLPSFASYANSSDVVTRHNNMSCPVISGQDTAGRGVHLSLDPSYLGYSHCVCIKGMQGNAEDGCQACPEGTYRGAADLFATRS 296
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: D7FVL6_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL6_ECTSI) HSP 1 Score: 268 bits (685), Expect = 2.370e-77 Identity = 164/403 (40.69%), Postives = 224/403 (55.58%), Query Frame = 1
Query: 31 FANSY-HAIQLKGLEALFNSTNGEQWIWSTGWLDAALGVCGWYGVTCYDNGDNVTGLALPDNGLVGNLSKAEQLFDMTSLQSLDLSGNKLVGSVALGFGLMPKLETLDLSRNQLSSFPENWGLGASSLQHLLLQHNNISGTLPSAWINLNTSKSHPLVHVEEFSRWLPELRTLSLGSNQITMTVYLALQSVIGLPSLQALDLSGNALGGELNAAFDLYHCEGGSLSNCDSTLHNSRAPSLTTLLLASNAIEGTLEADALPKSLFVFSVSDN-HLYGPVPEDYSQLSVFFAEGNEGLNDTLLPSFASYVNNSAV------VVSHENLSCPVITGNIAGGTTMRLRLDPSYIDYIHCVCVKGMEFNS-DGGCQPCAAGTYRSYT---ELFTSPSCEACPTNAITL 1203
FA++Y +Q+ GLEAL+ +TNG+ W STGW D +LGVC WYGVTC G NVTG++L +N LVG++S+A L ++ SL+ +DLS N+L G V L G+MP +ETLDLS N+LS FP WG GAS L+HL LQ+N ISG+ P+AW+N+ S S+PLVH++ S WLPELR+L LG N + T Y+ALQ+V SLQ LDLS NAL G ++ A LY+ +P D + + + VSDN + G VP YS+L + FAE N GL+ LP F +A H+ CP + A + LD +Y Y C C G++ + D C C G+YR+ + C CP+N+ T+
Sbjct: 29 FASAYTEEVQIAGLEALYYATNGQDWANSTGWSDDSLGVCSWYGVTCDSEGGNVTGISLSNNLLVGDVSEATDLTNVISLEEMDLSDNQLSGPVPLNLGMMPNMETLDLSGNELSYFPAAWGSGASMLRHLSLQNNRISGSFPAAWLNVTDSSSYPLVHLQPSSPWLPELRSLLLGGNNMNATGYVALQAVANWRSLQTLDLSDNALTGSVDDALALYYYW---------------SPPRVV--------------DTDNRRIDLLDVSDNGNFVGEVPASYSELLILFAE-NTGLSGLDLPDFIDATTTTAAGAWNEKSTVHDLFVCPAFKPS-ADENVAAVTLDHAYDGYSVCTCNDGLQGSGGDSECSECPLGSYRNLEKEDDPLAEGVCSPCPSNSTTM 400
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: A0A5B6YKG9_DAVIN (LRRNT_2 domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YKG9_DAVIN) HSP 1 Score: 70.5 bits (171), Expect = 1.510e-9 Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1
Query: 142 VCGWYGVTCYDNGDNVTGLALPDNGLVGNLSKAEQLFDMTSLQSLDLSGNKLVGSVALGFGLMPKLETLDLSRNQLSSFPENW-GLGASSLQHLLLQHNNISGTLP 456
VC W GVTC N VT L L D GL G + A L +++ L SLD+ N GSV + +L+ + L N S +W GL LQHL LQ+NN +GT+P
Sbjct: 60 VCNWIGVTCGVNHQRVTALNLSDMGLRGTI--APHLGNLSFLTSLDIYNNNFHGSVPRELARLHRLKGMYLGYNSSSGEVPSWFGLMLPKLQHLFLQYNNFTGTIP 163
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: A0A4D6LZC8_VIGUN (LRR receptor-like serine/threonine-protein kinase FLS2 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6LZC8_VIGUN) HSP 1 Score: 69.3 bits (168), Expect = 6.380e-9 Identity = 73/231 (31.60%), Postives = 107/231 (46.32%), Query Frame = 1
Query: 196 LALPDNGLVGNLSKAEQLFDMTSLQSLDLSGNKLVGSVALGFGLMPKLETLDLSRNQLSS-----FPENWGLGASSLQHLLLQHNNISGTLP-----SAWINLNTSKSHPLVHVEEFSRWLPELRTLSLGSNQITMTVYLALQSVIGLPSLQALDLSGNALGGELNAAFDLYHCEGGSLSNCDSTLHNSRAPSLTTLLLASNAIEGTLEADALPKSLFVFSVSDNHLYGPV 858
L L +N LVG L + +L L+ L LS N L G + FG L +LD++ N LS G +L+HL LQ N I+GT+P SA ++L+ S +H + E S L TLS+ SN + + +S +L++L++ N L E + ++H LS C SL L L N I GTL ++ SL V S+ +N L G +
Sbjct: 335 LHLSNNRLVGMLKEGNKL--PFRLEFLSLSSNLLEGGIPKSFGSACALRSLDITDNNLSDELSTIIHHLSGCAKYTLEHLSLQGNQINGTIPDLSAFSALMSLDLSNNHLNGKIREDSNLPFHLETLSISSNFLEGGIP---RSFGNACALRSLEMGDNRLSVEFSMI--IHH-----LSGC-------ARYSLKELYLRMNEINGTLIDLSIFTSLRVLSIGENKLSGKI 546
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: A0A0L0D714_THETB (Leucine Rich Repeat family protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D714_THETB) HSP 1 Score: 64.3 bits (155), Expect = 2.570e-7 Identity = 54/159 (33.96%), Postives = 77/159 (48.43%), Query Frame = 1
Query: 25 AVFANSYHAIQLKGLEALFNSTNGEQWIWSTGWLDAALGVCGWYGVTCYDNGD----NVTGLALPDNGLVGNLSKAEQLFDMTSLQSLDLSGNKLVGSVALGFG-LMPKLETLDLSRNQLSSFPENWGLGASSLQHLLLQ---HNNISGTLPSAWINLN 477
A A S A +L L AL+ +TNG W S GW D C GVTC N +V + L N L G L + +D+ L+ LDLS N + G+V + +G + LE L+L +L S + GLG + ++ N ++GTLP W L+
Sbjct: 19 AAAAVSVPAAELAALNALYEATNGPTWADSRGWNDGD--ACAAVGVTCSTNVTAGTAHVVAIELSGNKLSGTLPASG--WDLPELRILDLSDNLIGGTVPVSWGESLQALEELNLGGERLLSLAAHEGLGPNYRYFTSIKVYSSNPLTGTLPPEWGKLS 173
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: A0A1V5PX21_9CHLR (Internalin-A n=1 Tax=Chloroflexi bacterium ADurb.Bin360 TaxID=1852861 RepID=A0A1V5PX21_9CHLR) HSP 1 Score: 63.2 bits (152), Expect = 6.400e-7 Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 52 IQLKGLEALFNSTNGEQWIWSTGWLDAALGVCGWYGVTCYDNGDNVTGLALPDNGLVGNLSKAEQLFDMTSLQSLDL 282
I+ + LEAL+NSTNG QW+ GW+ C WYGVTC+D ++T L+L N L G + A ++ ++T+LQ LDL
Sbjct: 1273 IEKQALEALYNSTNGSQWLNRNGWM-VDPNACTWYGVTCFDG--HITRLSLVGNQLSGAI--APEIGNLTALQYLDL 1344
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: A0A8K0HEQ1_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HEQ1_9ROSA) HSP 1 Score: 62.4 bits (150), Expect = 8.580e-7 Identity = 73/235 (31.06%), Postives = 104/235 (44.26%), Query Frame = 1
Query: 265 LQSLDLSGNKLVGSVALGF-GLMPKLETLDLSRNQLSSFPENWGLGASSLQHLLLQHNNISGTLPSAWINLNTSKSHPLVHVEEFSRWLPELRTLSLGSNQITMTVYLALQSVIGLPSLQALDLSGNALGGELNAAFDLYHCEGGSLSNCDSTLHNSRAP-----SLTTLLLASNAIEGTLEADALPKSLFVF-SVSDNHLYGPVPEDYSQL---SVFFAEGNEGLN-DTLLPSF 936
++ L LS KL GS+A GF M L+TLDLS N+L W SL + L N G++ S + N S S ++ L+L SN+ T L+ G P L+ LDLS N L + L E ++S+C ++ S P SL L +++N + GT AD P F ++S N+ G + D Q S F+ GN N + PSF
Sbjct: 59 IRELKLSSKKLNGSIAWGFLRNMSNLQTLDLSGNRLRGQLPGWLWSIPSLVEVNLSMNRFGGSVGSEPTSRNGSFS--------------SIQVLNLSSNRFTNLARLS-----GFPKLRVLDLSRNDLRTLPSGFKSLTKLENLNISSC--SISGSLKPISALRSLKYLDVSNNKLNGTFPADFPPLGGLQFLNISLNNFTGLISLDKYQRFGKSAFYNAGNFSFNMASKTPSF 272
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: A9RKP6_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RKP6_PHYPA) HSP 1 Score: 58.9 bits (141), Expect = 8.770e-7 Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 1
Query: 145 CGWYGVTCYDNGDNV---TGLALPDNGLVGNLSKAEQLFDMTSLQSLDLSGNKLVGSVALGFGLMP-----------------------------KLETLDLSRNQLS-SFPENWGLGASSLQHLL-LQHNNISGTLPSA 462
C WYG+ C + G+NV L+LP+ L G L+K + F T +++LDL GN L GS+ G + KL++LD S N+LS + P + L S+L+H L + HNNI G +PS+
Sbjct: 27 CNWYGIRCGEVGENVGRVISLSLPERKLEGVLTKYIRHF--TYMETLDLGGNNLTGSIPEEIGALKHLKILHLIGLNXXXXXXXXXXXXXXXNCSKLQSLDFSDNKLSGAIPPSLSL-LSNLKHTLNISHNNILGLIPSS 163
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: A0A103YIV7_CYNCS (Leucine-rich repeat-containing protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YIV7_CYNCS) HSP 1 Score: 62.4 bits (150), Expect = 1.090e-6 Identity = 56/174 (32.18%), Postives = 75/174 (43.10%), Query Frame = 1
Query: 145 CGWYGVTCYDNGDNVTGLALPDNGLVGNLSKAEQLFDMTSLQSLDLSGNKLV--------------------------GSVALGFGLMPKLETLDLSRNQLSSFPE---NWGLGASSLQHLLLQHNNISGTLP------SAWINLNTSKSHPLVHVEEFSRWLPELRTLSLGSN 561
C W GV C +V L LP L G + LF + LQSL+L+ N L+ G + L L+PKL +LDLSRN + P N ++SL+ LL NIS LP S+ +L+ S +H L + + LP L L LGSN
Sbjct: 30 CTWNGVICSQYTGDVIALDLPCAMLRGTIHPNSTLFSLPHLQSLNLAFNNLIDSQLPHEIGMLSNSLTHLNISYCGLTGQIPLEISLLPKLVSLDLSRNLMKLEPHVFYNLLHNSTSLEELLFDQVNISAVLPTYLNISSSMKSLHLSSTHLLGKLCDNIFNLPYLEELDLGSN 203
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Match: A0A5J5AXN9_9ASTE (LRRNT_2 domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5AXN9_9ASTE) HSP 1 Score: 62.0 bits (149), Expect = 1.240e-6 Identity = 64/219 (29.22%), Postives = 91/219 (41.55%), Query Frame = 1
Query: 226 NLSKAEQLFDMTSLQSLDLSGNKLVGSVALGFGLMPKLETLDLSRNQLSSFPENWG--LGASSLQHLLLQHNNISGTLP-SAWINLNTSKSHPLVHVEEFSRWLPELRTLSLGSNQITMTVYLALQSVIGLPSLQALDLSGNALGGELNAAFDLYHCEGGSLSNCDSTLHNSRAPSLTTLLLASNAIEGTLEADALPKS----LFVFSVSDNHLYGPVP 861
N S ++L M +L+ L+LS N + G + + L LDLS N+L+ E L LQ+L L N+ + P A INL + L N++ + Q + L +L+ LDLSGN + GE++ N PSLTTL + N + GTL AD S + F VS NH+ G VP
Sbjct: 169 NSSHFQELTIMNNLEVLNLSSNGIAGEIPSSIWTLTSLSVLDLSWNELNGTTEGLQGILNLKKLQYLNLSANSFTELPPLGALINL---------------------KYLEFSFNRLENLNHF--QELTNLSNLEVLDLSGNDITGEISP-------------------FNWTLPSLTTLSIGWNQLNGTLPADMRLNSENLNMTWFDVSMNHIQGEVP 345 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53625.12717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53625.12717.1 >prot_H-elongata_contig53625.12717.1 ID=prot_H-elongata_contig53625.12717.1|Name=mRNA_H-elongata_contig53625.12717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=406bp LIAAAWESAVFANSYHAIQLKGLEALFNSTNGEQWIWSTGWLDAALGVCGback to top mRNA from alignment at H-elongata_contig53625:390..2656- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53625.12717.1 ID=mRNA_H-elongata_contig53625.12717.1|Name=mRNA_H-elongata_contig53625.12717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2267bp|location=Sequence derived from alignment at H-elongata_contig53625:390..2656- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53625:390..2656- >mRNA_H-elongata_contig53625.12717.1 ID=mRNA_H-elongata_contig53625.12717.1|Name=mRNA_H-elongata_contig53625.12717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2436bp|location=Sequence derived from alignment at H-elongata_contig53625:390..2656- (Himanthalia elongata Himel1 dioecious)back to top |