mRNA_H-elongata_contig53601.12716.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53601.12716.1
Unique NamemRNA_H-elongata_contig53601.12716.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 2.670e-146
Identity = 211/292 (72.26%), Postives = 245/292 (83.90%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASIKGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRE 877
            AFR+LVRRHGC L +TQMLH+ +FAP+NA KFR++RFDGVD+ EDRPLI QFCGN+P+T+V+AARHVE   DAVDLNLGCPQKIAKKGNYGA+LL NP LCE IVA MSRELSVPVTVKIRA D+++DTLDL RRLE AGAQ+LTVHGRTV   KT QG A+W II KVK  + IPVVANGG+ET ADAERLLE TGAD+VMSSEGLLE+P+LFD  L PM++L+G E+ +RIL    EY+EL KR+P P+ SIKGHLFK+LYRLLECHHDLR RL HY+ DA  AD +V E
Sbjct:  108 AFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAADWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLIPMEELQGLEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHE 399          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE)

HSP 1 Score: 410 bits (1054), Expect = 8.160e-129
Identity = 210/323 (65.02%), Postives = 241/323 (74.61%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEEL---------------------------------VYRILLLAVEYVELAKRFPTPVASIKGHLFKILYRLLECHHDLRGRLAHYEADATVADAVV 871
            AFR+LVRRHGC L +TQMLH+ +FAP+NA KFR++RFDGVD+ EDRPLI QFCGN+P+T+V+AARHVE   DAVDLNLGCPQKIAKKGNYGA+LL NP LCE IVA MSRELSVPVTVKIRA DKD+DTLDL RRLE AGAQ+LTVHGRTV   KT QG ANW II KVK    IPVVANGG+ET ADAERLLE TGAD+VMSSEGLLE+P+LFD  L P+++L+G E+                                  +RIL    EY+EL K +P P+ SIKGHLFK+LYRLLECHHDLR RL HY  DA  AD ++
Sbjct:  108 AFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKDSDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQGAANWDIIRKVKEVAGIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDRDLIPIEELQGVEVRRVSSFSCYSARRTPRMFFTCLTINAGLPGPQVAHRILSFTTEYMELVKLYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYHCDAMEADVIM 430          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.930e-104
Identity = 166/278 (59.71%), Postives = 206/278 (74.10%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVAS--IKGHLFKILYRLLECHHDLRGRL 829
            AFR L RRHGCDL +TQMLH+ +F+   A KFR     G D  EDRPLIAQFCGNDPE LV+AAR+VE  V+A DLNLGCPQ+IAKKGNYGA+LL    LCE+++  M+ +L+ PVTVKIR L    +T+ L  RLE AG Q++TVHGRTVR AKT  G A+W+II +VK AL IPVVANGG+ET ADAER L  TGAD++MSSE LLEDP+LFD +L  + ++ G  L  R L LA EY++L + +P  + +  ++ HLFK+L+RLL CH DLRGRL
Sbjct:   22 AFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 299          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA)

HSP 1 Score: 281 bits (720), Expect = 6.570e-88
Identity = 170/369 (46.07%), Postives = 214/369 (57.99%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGV---DEA----EDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEE-----------------------LVYRILLLAVEYVELAKRFPTP--VASIKGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLR------------ISQRRWYRRH 976
            AFR LVRRHG DL FTQMLH+  FA     ++R+  FDG    D++    EDRPLIAQFCGNDP T+V+AA +++  VDA+DLNLGCPQKIAKKG YGAFLLS PVL   IV  M+  L VP+TVKIR L    +T+     L+ AGA M+TVHGRTV+Q K     A+W+++  V+ AL IPVVANGG+ET +DA R L  TGAD VMSSE LLE+P LF         L G E                       +  R L    EY+ L+  FP    + + KGH FK+LYRLLE H D+R RL      A ++D +   L  RY      + P+  +P +LR            ++ + WYRRH
Sbjct:   79 AFRLLVRRHGADLAFTQMLHAKNFA--TVPRYREDNFDGFLRDDQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQDHVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMATSLDVPITVKIRMLPTKEETVQFACMLQDAGAAMVTVHGRTVKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDALRCLVETGADMVMSSEALLENPGLFQQNTDHSQDLVGSEGGALNGGTSRSEMDYSEWCEAQLVAARQLSYMREYIALSTLFPARDVIGTTKGHAFKMLYRLLEVHTDVRERLVRMRNLADLSD-ITDTLAARY------RLPVEASPDELRGFRCDDQSTPLHVAAKTWYRRH 438          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A7S3UVI5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI5_HETAK)

HSP 1 Score: 258 bits (659), Expect = 4.240e-79
Identity = 151/313 (48.24%), Postives = 198/313 (63.26%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAE--DRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSV---PVTVKIRALDKDADTLDLVR------RLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFD---DTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASIKGHLFKILYRLLECHHDLRGRLAHYEADATVADAVV--RELCERY 892
            AFR L R++G  L +TQMLHS  F+  +   FR+  FDG+D  E  DRPLIAQF GN PET+V+AA+++E  VDA+DLN GCPQ+IA+KGNYGAFLL N  LC  +V+ ++   +    P TVK+R L       DL R      R+ A GAQ+L +HGRTV Q+KT  G+A+W +I  VK+ + IPV+ANGG+E   D +R L+ TGAD+VMSSE LLE+P LFD    +   +  L G    +R L LA+EY+EL  R PT   + K H+FK LYRL E   DLR +    ++ A   D VV   E+  RY
Sbjct:    8 AFRLLCRKYGTTLAYTQMLHSSHFSTPSNSFFRETNFDGLDPEETIDRPLIAQFNGNVPETVVKAAKYIEHQVDAIDLNFGCPQQIARKGNYGAFLLENEDLCAALVSALASRPAASTCPPTVKMRCLPGPDGRPDLERTVAFAQRMAAEGAQLLCLHGRTVEQSKTNAGSADWEVIRLVKQEVDIPVIANGGIENFDDVQRCLQITGADAVMSSEALLENPMLFDPARSSAAALAALDGAGWAHRQLGLALEYLELVARHPTHYGTFKSHVFKFLYRLFEEQKDLRAKFGD-KSTAMFEDMVVIILEMASRY 319          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: W7TKF8_9STRA (Dihydrouridine synthase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKF8_9STRA)

HSP 1 Score: 261 bits (666), Expect = 7.340e-79
Identity = 162/345 (46.96%), Postives = 215/345 (62.32%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGV----DEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLF---DDTLTPMDQLRGEE---------LVYRILLLAVEYVELAKRF--PTPVASIKGHLFKILYRLLE--CHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRISQRRWYRRH 976
            AFR LVRR+G DL +TQM H+  FA  N + +R++ +DG+    + A DRPLIAQF G+  + LV+AA  ++  VDAVDLNLGCPQ+IAK+G+YGA+LL    L  ++++ M + L+VPVT KIR L  + DTL+LV+ +E AG  +LT+HGRT  Q K + G A+WA I K+K A  IPVVANGGVET  DA      TGAD+VMSSEGLLE+PSLF      L   ++ R +          L +R L  A EY+ELAK+F     VA++KGHLFK+LY +LE   ++DLR +L          + VV+EL E  +   D    L        +S   WYRRH
Sbjct:  143 AFRTLVRRYGIDLAYTQMFHATNFA--NVKVYREENWDGLGNAPENAFDRPLIAQFAGDSADELVRAASLIQHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLLSHMVKHLAVPVTTKIRLLPNERDTLELVKAIEDAGVALLTIHGRTREQNKMSVGKADWAAINKIKCACHIPVVANGGVETYEDALACQSVTGADAVMSSEGLLENPSLFLPGSSLLVGGERSRMQSCEREVEAFALAHRQLNFAQEYLELAKKFWPREGVATVKGHLFKMLYHILEVPANYDLREKLGAKGNGIKQYEQVVQELLETRYSSIDVAIVLTKGAIVSPVS---WYRRH 482          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: K3WW65_GLOUD (tRNA-dihydrouridine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW65_GLOUD)

HSP 1 Score: 252 bits (643), Expect = 4.540e-77
Identity = 152/336 (45.24%), Postives = 206/336 (61.31%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASI-KGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRI--SQRRWYRRHWPDRGQQK 1000
            AFR L R+HG +L +T M HS  FA   A  +R++ F+     +DRPLI QFCGNDP T++ AA+HVEG  DAVDLNLGCPQ IA+KG YG+FL+    +  +IV T+S  LS+PVTVKIR    + +TL+    L+AAG  ML VHGRT    KT     NW II ++K  L IPV+ANGG+E   D ER LEAT AD VM+SE +LE+P++  +T    +   G++  +  L LA +Y+E A++FP     I + HLFKIL++ L  H DLR  LA  +  A + D +++EL E      +   P G       +  ++  WYRRH   +GQ+K
Sbjct:   42 AFRMLTRKHGAELCYTPMFHSRLFAESPA--YREKMFE--QHIQDRPLIVQFCGNDPATVLAAAKHVEGHCDAVDLNLGCPQGIARKGRYGSFLMKEKDVVREIVQTLSDNLSIPVTVKIRMFPDEQETLEFCDMLQAAGCDMLVVHGRTKEMNKTLVREVNWDIIRQIKERLTIPVIANGGIEFPEDIERCLEATKADGVMTSEAILENPAILAET----NNTPGKDTSF--LELAKQYMEFAQQFPPANEKIVRAHLFKILFQDLRVHTDLRDLLAAVKTRAQMDD-ILKEL-EGRLRKEELDAPAGEKQWSKVVYAAETSWYRRH--RKGQEK 363          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A3R7YT01_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7YT01_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.070e-76
Identity = 153/334 (45.81%), Postives = 205/334 (61.38%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASI-KGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRISQRRWYRRHWPDRGQQK 1000
            AFR L R  G D  +T MLHS  F    + ++R++ F+     +DRPLI QFCGNDP+T++ AA+ VE   DAVDLNLGCPQ IA+KG+YG+FL+ +    + IV T+SR L++PVTVKIR  + D +TL+    LE AG  +LTVHGRT    KT     NW II ++K  L+IPV+ANGG+ET  D  R LEATG D VMSSEGLLE+P+LF D+    +   G++  +  L LA +Y+E A  +P     I + HLFK+L++ L  H DLR  LA  ++   + D +V EL  R     D K       T   + +  WYRRH   +GQ+K
Sbjct:   39 AFRMLCRTLGADCCYTPMLHSRLFT--ESVEYREKMFEH--HLQDRPLIVQFCGNDPKTVLMAAKMVESHCDAVDLNLGCPQGIARKGHYGSFLMHDKNTVKSIVETLSRGLTIPVTVKIRVFNDDNETLEFAEMLEKAGCDLLTVHGRTKEMNKTAVQEVNWDIIRRIKERLSIPVIANGGLETHEDIARCLEATGCDGVMSSEGLLENPALFADS----NNKPGQDTSF--LQLARQYLEYATLYPPANDKIVRAHLFKMLFQDLRVHSDLRDALAAAKSQKEMVD-IVDELAVRLKKAEDDKATSEIKKTTYAM-ETSWYRRH--RQGQEK 358          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: D0NNQ3_PHYIT (tRNA-dihydrouridine synthase n=25 Tax=Phytophthora TaxID=4783 RepID=D0NNQ3_PHYIT)

HSP 1 Score: 248 bits (634), Expect = 8.230e-76
Identity = 150/334 (44.91%), Postives = 205/334 (61.38%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASI-KGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRISQRRWYRRHWPDRGQQK 1000
            AFR L R+ G D  +T MLHS  FA   + ++R++ F+     +DRPL+ QFCGNDP+T++ AA+ VEG  DAVDLNLGCPQ IA+KG+YG+FL+ +    +  V T+S  L++PVTVKIR    D +TL+    L+ AG  +LTVHGRT    KT     NW II ++K  L IPV+ANGG+ET  D  R LEATG D VMSSEGLLE+P+LF DT    +   GE+  +  L LA +Y+E A  +P     I + HLFKIL++ L  H DLR  LA  ++   + + +V EL  R   + +++            ++  WYRRH   +GQ+K
Sbjct:   38 AFRMLCRKLGADCCYTPMLHSRLFA--ESAEYREKMFEH--HIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVNWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADT----NNTPGEDTSF--LELARQYLECATLYPPASDKIVRAHLFKILFQDLRVHSDLRDALAAAKSQQEMVE-IVDELAVR-LKEAESENAGPEIKKVAYAAKASWYRRH--RQGQEK 357          
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Match: A0A5D6XL89_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL89_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.300e-75
Identity = 150/328 (45.73%), Postives = 194/328 (59.15%), Query Frame = 2
Query:    2 AFRFLVRRHGCDLTFTQMLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHVEGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVTVKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIAKVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDTLTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASI-KGHLFKILYRLLECHHDLRGRLAHYEADATVADAVVRELCERYF--FDPDTKTPLGGAPTDLRISQRRWYRRH 976
            AFR L RRHG +L +T M HS  FA   A  +R++ F+      DRPLI QFCGNDP+T++ AA+ VEG  DAVDLNLGCPQ IA+KG YG+FL+ +      IV T+S  L+VPVTVKIR    + +TL+    L+AAG  +L VHGRT    KT    A+W I+ ++K  L IPVVANGG+E   D +R L+AT AD VMSSE +LE+P+LF              L Y  + LA EY+ LA+ FP     I + HLFK+L++ L  H DLR  LA  +    +A A+VRE+  R      P  +  +  A T        WYRRH
Sbjct:   29 AFRMLCRRHGAELCYTPMFHSRLFAESPA--YREKMFE--QHVHDRPLIVQFCGNDPQTMLAAAKLVEGHCDAVDLNLGCPQGIARKGRYGSFLMQDKAAVRAIVETLSAHLAVPVTVKIRVFPDEQETLEFCDMLQAAGCDLLVVHGRTKEMNKTAVRAADWGIVQRIKARLTIPVVANGGIEAPGDVQRCLDATHADGVMSSEAILENPALFSRRDRTTTATATPSLSY--VALATEYLALAEDFPPASDKIVRAHLFKLLFQDLRVHTDLRDALAAAKTRVHMA-AIVREVETRAADPSHPQHRPVVYAAATS-------WYRRH 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53601.12716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q4_ECTSI2.670e-14672.26Dihydrouridine synthase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD10_9PHAE8.160e-12965.02Reverse transcriptase domain-containing protein n=... [more]
A0A836CKE0_9STRA1.930e-10459.71tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tr... [more]
A0A7S2C8F7_9STRA6.570e-8846.07Hypothetical protein n=3 Tax=Dictyocha speculum Ta... [more]
A0A7S3UVI5_HETAK4.240e-7948.24Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
W7TKF8_9STRA7.340e-7946.96Dihydrouridine synthase n=2 Tax=Nannochloropsis ga... [more]
K3WW65_GLOUD4.540e-7745.24tRNA-dihydrouridine synthase n=1 Tax=Globisporangi... [more]
A0A3R7YT01_9STRA1.070e-7645.81tRNA-dihydrouridine synthase n=1 Tax=Peronospora e... [more]
D0NNQ3_PHYIT8.230e-7644.91tRNA-dihydrouridine synthase n=25 Tax=Phytophthora... [more]
A0A5D6XL89_9STRA1.300e-7545.73tRNA-dihydrouridine synthase n=1 Tax=Pythium brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53601contigH-elongata_contig53601:282..3153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score403.7
Seed ortholog evalue8.1e-110
Seed eggNOG ortholog2880.D7G7Q4
KEGG koko:K05542
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
EC1.3.1.88
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAldolase-type TIM barrel
Ec32 orthologEc-06_000770.1
Exons8
Model size1163
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53601.12716.1prot_H-elongata_contig53601.12716.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53601 334..2993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930874.1456633-UTR-H-elongata_contig53601:281..3331622930874.1456633-UTR-H-elongata_contig53601:281..333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53601 282..333 +
1691679606.686458-UTR-H-elongata_contig53601:281..3331691679606.686458-UTR-H-elongata_contig53601:281..333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53601 282..333 +
1622930874.3089755-UTR-H-elongata_contig53601:2993..31531622930874.3089755-UTR-H-elongata_contig53601:2993..3153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53601 2994..3153 +
1691679606.798031-UTR-H-elongata_contig53601:2993..31531691679606.798031-UTR-H-elongata_contig53601:2993..3153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53601 2994..3153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930874.1706498-CDS-H-elongata_contig53601:333..3701622930874.1706498-CDS-H-elongata_contig53601:333..370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 334..370 +
1691679606.7027962-CDS-H-elongata_contig53601:333..3701691679606.7027962-CDS-H-elongata_contig53601:333..370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 334..370 +
1622930874.1926441-CDS-H-elongata_contig53601:604..6961622930874.1926441-CDS-H-elongata_contig53601:604..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 605..696 +
1691679606.718299-CDS-H-elongata_contig53601:604..6961691679606.718299-CDS-H-elongata_contig53601:604..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 605..696 +
1622930874.2122033-CDS-H-elongata_contig53601:977..11261622930874.2122033-CDS-H-elongata_contig53601:977..1126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 978..1126 +
1691679606.7332308-CDS-H-elongata_contig53601:977..11261691679606.7332308-CDS-H-elongata_contig53601:977..1126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 978..1126 +
1622930874.233332-CDS-H-elongata_contig53601:1365..14721622930874.233332-CDS-H-elongata_contig53601:1365..1472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 1366..1472 +
1691679606.741642-CDS-H-elongata_contig53601:1365..14721691679606.741642-CDS-H-elongata_contig53601:1365..1472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 1366..1472 +
1622930874.2515733-CDS-H-elongata_contig53601:1794..20421622930874.2515733-CDS-H-elongata_contig53601:1794..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 1795..2042 +
1691679606.7521608-CDS-H-elongata_contig53601:1794..20421691679606.7521608-CDS-H-elongata_contig53601:1794..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 1795..2042 +
1622930874.2658222-CDS-H-elongata_contig53601:2208..22921622930874.2658222-CDS-H-elongata_contig53601:2208..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 2209..2292 +
1691679606.762934-CDS-H-elongata_contig53601:2208..22921691679606.762934-CDS-H-elongata_contig53601:2208..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 2209..2292 +
1622930874.2818885-CDS-H-elongata_contig53601:2524..26321622930874.2818885-CDS-H-elongata_contig53601:2524..2632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 2525..2632 +
1691679606.7734246-CDS-H-elongata_contig53601:2524..26321691679606.7734246-CDS-H-elongata_contig53601:2524..2632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 2525..2632 +
1622930874.2957335-CDS-H-elongata_contig53601:2867..29931622930874.2957335-CDS-H-elongata_contig53601:2867..2993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 2868..2993 +
1691679606.785337-CDS-H-elongata_contig53601:2867..29931691679606.785337-CDS-H-elongata_contig53601:2867..2993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53601 2868..2993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53601.12716.1

>prot_H-elongata_contig53601.12716.1 ID=prot_H-elongata_contig53601.12716.1|Name=mRNA_H-elongata_contig53601.12716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MLHSGRFAPENARKFRKQRFDGVDEAEDRPLIAQFCGNDPETLVQAARHV
EGVVDAVDLNLGCPQKIAKKGNYGAFLLSNPVLCEQIVATMSRELSVPVT
VKIRALDKDADTLDLVRRLEAAGAQMLTVHGRTVRQAKTTQGTANWAIIA
KVKRALAIPVVANGGVETRADAERLLEATGADSVMSSEGLLEDPSLFDDT
LTPMDQLRGEELVYRILLLAVEYVELAKRFPTPVASIKGHLFKILYRLLE
CHHDLRGRLAHYEADATVADAVVRELCERYFFDPDTKTPLGGAPTDLRIS
QRRWYRRHWPDRGQQK*
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mRNA from alignment at H-elongata_contig53601:282..3153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53601.12716.1 ID=mRNA_H-elongata_contig53601.12716.1|Name=mRNA_H-elongata_contig53601.12716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2872bp|location=Sequence derived from alignment at H-elongata_contig53601:282..3153+ (Himanthalia elongata Himel1 dioecious)
GGCGTTCCGATTCCTAGTCCGACGGCACGGGTGCGACCTGACCTTCACTC AGATGCTTCATTCGGGGCGGTTCGCTCCCGAAAACGCTCGTGAGTCGGCC TAGGGATTGTTGCGCTGTGGTATGATACGTCAGATGCTAGATAGAGCTAG TTATGACATGACGTGAGGTGAAATATACTAGGATCCAAGTCTGTTACTCA GATCGGCACCAACCCTAATCCCAACCCTATGTATAGACTGGATGCTACGT GCATGATCAGCCAGCTCTGAATCGTCCTTGGCGCCTATTTATGTTCGACA ATCAATCCTCACCGCCGAGTCAGGCAAATTCCGTAAGCAGCGCTTCGACG GGGTGGACGAGGCAGAGGACCGTCCCTTGATCGCGCAGTTTTGCGGTAAC GACCCAGAGACGCTGGTGAGCCTCGTTCTCAAGCGCGACGCAATACTATC GCCGTCTTTCAGGTCATAAGCTCTCACCGCATAATGCAGCACTGATGGGT CACCGTTCATTGGCGATACGACCGGGCGTGTTGACCAATCAAAGTATTTT CGCAATACCGTCCAGCTCGTGGTTCGTGTAGAGCTCTCGTCCCAGCGACA CCGCGCGACTCTACCATGCCCTCTTGAAATCGTCACTGCTACTGAAATGT TTTAGGCGTTATCGTTGGCGGGTCGTGTTGTGCTCTACTCTGATAGGTAC AAGCTGCTCGGCACGTCGAAGGGGTCGTGGACGCAGTCGACCTGAACCTC GGCTGCCCCCAGAAAATTGCGAAAAAGGGCAACTACGGAGCCTTTCTTTT GTCCAACCCGGTGCTTTGTGAGCAGATCGTTGCGACGATGAGCAGGTGAG GAGAAACACCGGCAAGTGGCGCCCTATTTTCCGTCGGCTCCCTCCCACAC GCGTTGAATGTTTTATAACTTGTACGCAATCGCCTTTGACCAGCCTCCAA CCGCAGTCTTCATATATATATATATATATATATATATGCACATATCATGA TTCGGATTCGAACCCACTAACGTAAACACCTGCTATTTACGGCTCTATAT CATCCGCCATCACCGCCTGCTTCGCTGCTTGCAGAGAGCTAAGCGTCCCT GTTACTGTGAAGATCAGGGCCCTAGACAAGGACGCAGATACATTGGATCT CGTGCGAAGACTCGAGGCCGCTGGAGCCCAGATGCTCACCGGTGCGTTCG TCATCCGGTGACGCCGCGGCTATACGCATAAGCAATGCATCCGGATGGTG CGATGACGACAAGAGTTCTGGCTCGCCACTAACGCCGGTCCTTTTGAGCG GATTGGTCACCTCTCTCGTTGAATGCACGTAGAAAATGAGCCATAAATCA CCGCAACCTAGGCGATCAGATTATTTCTGCCCGTAAAGCATAGTGATCTT AATAGTACACGCGAGCGGTAAGCATGTTCATGCTGCGTATAGCGCTTGTC ATACCCGAAATGCTTGCTAAGTCGGTATCCGCCCCACGTTCACCTAAATC TTCCCCGCGGCAGTCCACGGGCGCACGGTCCGTCAGGCGAAGACTACGCA GGGAACGGCCAACTGGGCCATCATCGCCAAGGTAAAGCGCGCCTTGGCGA TCCCGGTAGTGGCGAACGGCGGAGTGGAGACTAGGGCGGACGCCGAACGT CTGCTGGAGGCGACAGGAGCCGACTCGGTGATGTCCTCCGAGGGACTCCT CGAAGATCCGTCACTATTTGATGATACATTGACCCCCATGGATCAGCTTC GGGGTGAAGAGGTGGGCTACGTTTCTTCATCAACCTTTCGACTCGTGGGG TAGCGGCGGGCTTTACGTGTGCGATTAAAATTGATGTTAAAGTGCTTACG GTTTCGAATGCGCTCCTTCGTTGACGAGCCATTTCGTTGGTAACCCTCGT CGTTCGCTTTTCTCCCGCGCGAGACAGTTGGTATATCGCATCCTGCTTCT GGCGGTGGAGTACGTAGAGCTGGCGAAGCGTTTTCCAACCCCGGTTGCAA GCATCAAGGGGGTGAGTTCGGCTATTTTTTGTTATTCAACGGGCATTGTT ACCGGTGACAAGCGTTTGTAGTCCATCAAGCTGCGTGTGTCCCCTCTCTG TCAATATCGCGGCCTTCGGTACCTTTCGAATGTTGCCAACTGAATGCCAT CGTACCACTTCCGGTAACTGCCTTTCGAGTATGTCATGGCATGATGATGT GTGCCGAATATTTCTCGGATCGCATCCGCCGGCGCGTGAGCAGCACTTGT TCAAGATCTTGTACCGTCTACTGGAGTGCCACCATGACTTGCGCGGCAGG CTGGCGCACTACGAGGCGGACGCCACCGTTGCTGACGCTGTCGTTCGCGA GGTATGTACATCGCTTGAGAACCATCCGGCTCTAGTAGATGGGATTGCGG TTGATCGTTCATCTGTGGATTTGTCCATCGTGGTGTAAGATATTGAAATG CTCGATTATCGTCCCGAGGTCCTGCCATGGTTCCCTATGTGTTGCATGGG AGTCACGGTTCATGATGTATGATTGCTAAACCAATTCTATCGCGCCAATC GACCCGCTGTCTGATTTTGCGACTGATCTCCCAAAGCTGTGCGAGCGATA TTTCTTCGATCCGGACACGAAGACGCCCTTGGGTGGAGCTCCGACAGATC TCCGAATATCCCAGCGTCGCTGGTACAGACGCCATTGGCCGGACAGAGGA CAGCAAAAGTAGGCATTCGGAAGGCAGCACGTGTTGCTACATGCTGTATA GAACTGAAGATAAGAGTACTTCGGTAGCACCCCAACAACATGAAATTAAT TGTTTTCGAGAAGTGGCCGACAATCAGTTAAGAAGAACGTTGAAACTCTT GTCGACAGAAAACGAATACGCT
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Coding sequence (CDS) from alignment at H-elongata_contig53601:282..3153+

>mRNA_H-elongata_contig53601.12716.1 ID=mRNA_H-elongata_contig53601.12716.1|Name=mRNA_H-elongata_contig53601.12716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig53601:282..3153+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCATTCGGGGCGGTTCGCTCCCGAAAACGCTCATGCTTCATTCGG
GGCGGTTCGCTCCCGAAAACGCTCGCAAATTCCGTAAGCAGCGCTTCGAC
GGGGTGGACGAGGCAGAGGACCGTCCCTTGATCGCGCAGTTTTGCGGTAA
CGACCCAGAGACGCTGGCAAATTCCGTAAGCAGCGCTTCGACGGGGTGGA
CGAGGCAGAGGACCGTCCCTTGATCGCGCAGTTTTGCGGTAACGACCCAG
AGACGCTGGTACAAGCTGCTCGGCACGTCGAAGGGGTCGTGGACGCAGTC
GACCTGAACCTCGGCTGCCCCCAGAAAATTGCGAAAAAGGGCAACTACGG
AGCCTTTCTTTTGTCCAACCCGGTGCTTTGTGAGCAGATCGTTGCGACGA
TGAGCAGGTACAAGCTGCTCGGCACGTCGAAGGGGTCGTGGACGCAGTCG
ACCTGAACCTCGGCTGCCCCCAGAAAATTGCGAAAAAGGGCAACTACGGA
GCCTTTCTTTTGTCCAACCCGGTGCTTTGTGAGCAGATCGTTGCGACGAT
GAGCAGAGAGCTAAGCGTCCCTGTTACTGTGAAGATCAGGGCCCTAGACA
AGGACGCAGATACATTGGATCTCGTGCGAAGACTCGAGGCCGCTGGAGCC
CAGATGCTCACCGAGAGCTAAGCGTCCCTGTTACTGTGAAGATCAGGGCC
CTAGACAAGGACGCAGATACATTGGATCTCGTGCGAAGACTCGAGGCCGC
TGGAGCCCAGATGCTCACCGTCCACGGGCGCACGGTCCGTCAGGCGAAGA
CTACGCAGGGAACGGCCAACTGGGCCATCATCGCCAAGGTAAAGCGCGCC
TTGGCGATCCCGGTAGTGGCGAACGGCGGAGTGGAGACTAGGGCGGACGC
CGAACGTCTGCTGGAGGCGACAGGAGCCGACTCGGTGATGTCCTCCGAGG
GACTCCTCGAAGATCCGTCACTATTTGATGATACATTGACCCCCATGGAT
CAGCTTCGGGGTGAAGAGTCCACGGGCGCACGGTCCGTCAGGCGAAGACT
ACGCAGGGAACGGCCAACTGGGCCATCATCGCCAAGGTAAAGCGCGCCTT
GGCGATCCCGGTAGTGGCGAACGGCGGAGTGGAGACTAGGGCGGACGCCG
AACGTCTGCTGGAGGCGACAGGAGCCGACTCGGTGATGTCCTCCGAGGGA
CTCCTCGAAGATCCGTCACTATTTGATGATACATTGACCCCCATGGATCA
GCTTCGGGGTGAAGAGTTGGTATATCGCATCCTGCTTCTGGCGGTGGAGT
ACGTAGAGCTGGCGAAGCGTTTTCCAACCCCGGTTGCAAGCATCAAGGGG
TTGGTATATCGCATCCTGCTTCTGGCGGTGGAGTACGTAGAGCTGGCGAA
GCGTTTTCCAACCCCGGTTGCAAGCATCAAGGGGCACTTGTTCAAGATCT
TGTACCGTCTACTGGAGTGCCACCATGACTTGCGCGGCAGGCTGGCGCAC
TACGAGGCGGACGCCACCGTTGCTGACGCTGTCGTTCGCGAGCACTTGTT
CAAGATCTTGTACCGTCTACTGGAGTGCCACCATGACTTGCGCGGCAGGC
TGGCGCACTACGAGGCGGACGCCACCGTTGCTGACGCTGTCGTTCGCGAG
CTGTGCGAGCGATATTTCTTCGATCCGGACACGAAGACGCCCTTGGGTGG
AGCTCCGACAGATCTCCGAATATCCCAGCGTCGCTGGTACAGACGCCATT
GGCCGGACAGAGGACAGCAAAAGTAGCTGTGCGAGCGATATTTCTTCGAT
CCGGACACGAAGACGCCCTTGGGTGGAGCTCCGACAGATCTCCGAATATC
CCAGCGTCGCTGGTACAGACGCCATTGGCCGGACAGAGGACAGCAAAAGT
AG
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