mRNA_H-elongata_contig53600.12715.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53600.12715.1
Unique NamemRNA_H-elongata_contig53600.12715.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 8.560e-23
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = -1
Query:   58 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRGSSIVRALPVSQAA 300
            QSLQDRTT  TVDE I EVKR F+ Q P+TL KVW + QA+L++I+LAKGDNT  LPHL+K   +  G SI + LP+S  A
Sbjct:   52 QSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQEIILAKGDNTIKLPHLKKDKAANSGRSIPKELPLSAEA 132          
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.520e-19
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = -1
Query:   40 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRGSSIVRALPVSQAAWNAAHS 300
            QSLQDR T  TVDE I EVKR F+ Q P+T  KVW + QA+L QI+LAKG+NTF LPHL+K   +  G SI + LP+S  A  A  +
Sbjct:  204 QSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAIL-QIILAKGNNTFKLPHLKKDNAANSGRSIPKELPLSAEASTAVRA 289          
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: UPI000E705B9B (uncharacterized protein LOC113279201 n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E705B9B)

HSP 1 Score: 56.2 bits (134), Expect = 4.870e-7
Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = -1
Query:   82 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRGSSIVR 300
            QS+Q R  +N +DELI  V++ ++  EP  + KV+ T+Q  + ++M A+G+  F LPH+ K    R G+  +R
Sbjct:  388 QSIQHRQRMNNIDELIVAVEKAYNDMEPRIINKVFLTHQLCMLEVMKARGEIRFVLPHIGKDKLEREGNLPMR 460          
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A392MRR2_9FABA (Transposase n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MRR2_9FABA)

HSP 1 Score: 53.9 bits (128), Expect = 2.390e-6
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = -1
Query:   97 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRG 300
            QS+Q++ T  T+DEL++ V+  F+  E  T  +++ T Q  + +IM  KG N + +PH++K    R+G
Sbjct:  167 QSIQEKITTKTIDELVQAVETAFEIFEVDTSNRIFLTLQTCMVEIMKRKGSNQYDIPHIKKTVLQRQG 234          
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: UPI00104066C4 (uncharacterized protein LOC114370211 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI00104066C4)

HSP 1 Score: 53.9 bits (128), Expect = 2.640e-6
Identity = 27/68 (39.71%), Postives = 38/68 (55.88%), Query Frame = -1
Query:   97 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRG 300
            QSLQ +   N+VDELIE VK+ FD      +  VW T Q  + +I+  +G N + +P + KA   R G
Sbjct:  195 QSLQQKVRANSVDELIEAVKKSFDEYPTKKVEYVWLTLQLCMREILKVEGSNRYKIPDVNKARLDREG 262          
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6H5JRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 8.680e-6
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = -1
Query:  169 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQ 300
            QSLQDRTT  T+D+L+ EV+R F AQ P  + +VWTT Q+V  +
Sbjct:  135 QSLQDRTTPTTIDQLVAEVERAFWAQSPGAVDRVWTTLQSVFRR 178          
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A0A9BDH3_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9BDH3_ARUDO)

HSP 1 Score: 50.4 bits (119), Expect = 2.440e-5
Identity = 23/68 (33.82%), Postives = 41/68 (60.29%), Query Frame = -1
Query:   97 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRG 300
            QS+Q +TT  T +EL+  V + F+  + +   +++ T    L +IM   G+N++ +PH+RKA   R+G
Sbjct:   92 QSIQQKTTCKTKEELVAAVDKAFEEYQVSKANRIFLTLHGCLNEIMRIGGNNSYNIPHIRKAMLERQG 159          
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6A4ZR54_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZR54_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 5.940e-5
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = -1
Query:   97 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRG 300
            QSLQDR +  T+DEL+      FD      L   + + QA L + M+  GDN + LPH+ K  + R+G
Sbjct:   25 QSLQDRKSTRTIDELVGHETSSFDEYPHERLNHTFMSLQACLIETMIHFGDNAYKLPHMSKEKHERKG 92          
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Match: A0A6A4Z322_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z322_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.090e-5
Identity = 23/86 (26.74%), Postives = 47/86 (54.65%), Query Frame = -1
Query:   43 QSLQDRTTLNTVDELIEEVKRVFDAQEPATLAKVWTTYQAVLEQIMLAKGDNTFALPHLRKATNSRRGSSIVRALPVSQAAWNAAH 300
            QSLQ     NT  E+++   + +D  +P +L + + T Q  L ++++A GDN++ +PH++K    + G  +  ++  S+  +   H
Sbjct:  356 QSLQQTHHSNTYQEIVDATNKAWDDVDPWSLERNFLTLQCCLREVIMAAGDNSYKVPHMKKEALKKSGK-LPESVMCSEDVFETGH 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53600.12715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K9R2_9PHAE8.560e-2359.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGY9_9PHAE2.520e-1955.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000E705B9B4.870e-736.99uncharacterized protein LOC113279201 n=2 Tax=Papav... [more]
A0A392MRR2_9FABA2.390e-635.29Transposase n=1 Tax=Trifolium medium TaxID=97028 R... [more]
UPI00104066C42.640e-639.71uncharacterized protein LOC114370211 n=1 Tax=Glyci... [more]
A0A6H5JRZ6_9PHAE8.680e-654.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0A9BDH3_ARUDO2.440e-533.82Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A6A4ZR54_9STRA5.940e-538.24Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4Z322_9STRA7.090e-526.74Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53600contigH-elongata_contig53600:2639..2938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930874.011575-CDS-H-elongata_contig53600:2638..29381622930874.011575-CDS-H-elongata_contig53600:2638..2938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53600 2639..2938 +
1691679606.6755428-CDS-H-elongata_contig53600:2638..29381691679606.6755428-CDS-H-elongata_contig53600:2638..2938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53600 2639..2938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53600.12715.1prot_H-elongata_contig53600.12715.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53600 2639..2938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53600.12715.1

>prot_H-elongata_contig53600.12715.1 ID=prot_H-elongata_contig53600.12715.1|Name=mRNA_H-elongata_contig53600.12715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MRNAPPPPLPLSSRVSRIPRRLADRQRTHDRRTSAAVRRLAQVGQGERVV
ALGQHNLFEDSLVGRPDLCKGCRLLRVEHPLDLLDELVHRVERSPVLERL
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mRNA from alignment at H-elongata_contig53600:2639..2938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53600.12715.1 ID=mRNA_H-elongata_contig53600.12715.1|Name=mRNA_H-elongata_contig53600.12715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig53600:2639..2938+ (Himanthalia elongata Himel1 dioecious)
ATGCGAAATGCCCCCCCCCCTCCCCTCCCCCTCAGTTCACGAGTGAGCCG CATTCCACGCCGCTTGGCTGACAGGCAGCGCACGCACGATCGACGAACCT CGGCGGCTGTTCGTCGCCTTGCGCAGGTGGGGCAAGGCGAACGTGTTGTC GCCCTTGGCCAGCATAATCTGTTCGAGGACAGCCTGGTAGGTCGTCCAGA CCTTTGCAAGGGTTGCAGGCTCCTGCGCGTCGAACACCCGCTTGACCTCC TCGATGAGCTCGTCCACCGTGTTGAGCGTAGTCCTGTCTTGGAGAGATTG
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Coding sequence (CDS) from alignment at H-elongata_contig53600:2639..2938+

>mRNA_H-elongata_contig53600.12715.1 ID=mRNA_H-elongata_contig53600.12715.1|Name=mRNA_H-elongata_contig53600.12715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig53600:2639..2938+ (Himanthalia elongata Himel1 dioecious)
ATGCGAAATGCCCCCCCCCCTCCCCTCCCCCTCAGTTCACGAGTGAGCCG
CATTCCACGCCGCTTGGCTGACAGGCAGCGCACGCACGATCGACGAACCT
CGGCGGCTGTTCGTCGCCTTGCGCAGGTGGGGCAAGGCGAACGTGTTGTC
GCCCTTGGCCAGCATAATCTGTTCGAGGACAGCCTGGTAGGTCGTCCAGA
CCTTTGCAAGGGTTGCAGGCTCCTGCGCGTCGAACACCCGCTTGACCTCC
TCGATGAGCTCGTCCACCGTGTTGAGCGTAGTCCTGTCTTGGAGAGATTG
ATGCGAAATGCCCCCCCCCCTCCCCTCCCCCTCAGTTCACGAGTGAGCCG
CATTCCACGCCGCTTGGCTGACAGGCAGCGCACGCACGATCGACGAACCT
CGGCGGCTGTTCGTCGCCTTGCGCAGGTGGGGCAAGGCGAACGTGTTGTC
GCCCTTGGCCAGCATAATCTGTTCGAGGACAGCCTGGTAGGTCGTCCAGA
CCTTTGCAAGGGTTGCAGGCTCCTGCGCGTCGAACACCCGCTTGACCTCC
TCGATGAGCTCGTCCACCGTGTTGAGCGTAGTCCTGTCTTGGAGAGATTG
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