mRNA_H-elongata_contig53579.12713.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53579.12713.1
Unique NamemRNA_H-elongata_contig53579.12713.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5K0F8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F8_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.450e-37
Identity = 73/148 (49.32%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + +D   I  RW  W  +LLN KSPT++    D +++      L   P++ EV+EAV ++ N K VG D++  EL+KL L  +  +L+ FH  VV VWQ   VPQ+WKDA I VLFKK DT ECGN+RGISL AHAGK++L VVA RL
Sbjct:   79 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRL 226
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.010e-36
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + QD   I  RW  W  +LLN KSPT++    D +++      L   P++ EV+EAV ++ N K VG D++  EL+KL L  +  +L+ FH+ VV VWQ   VPQ+WKD  I VLFKK DT +CGN+RGISL AHA K++L VVA RL
Sbjct:   24 VLQDPAFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHSIVVDVWQTGDVPQQWKDTTIKVLFKKRDTMKCGNWRGISLVAHASKVLLKVVATRL 171
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.700e-36
Identity = 70/148 (47.30%), Postives = 94/148 (63.51%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + +D   I  RW  W  +LLN KSPT++    D +++      L   P++ EV+EAV ++ N K VG+D++  EL+KL L  +  +L+ FH  VV  WQ    PQ+WKDA I VLFKK +T ECGN+RGI L AHAGKM+L VVA RL
Sbjct:   67 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKLFLDGDQGLLRAFHATVVDAWQTGDAPQQWKDATIKVLFKKGNTMECGNYRGICLVAHAGKMLLKVVATRL 214
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5L9V0_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9V0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.800e-36
Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + +D   I  RW  W  +L N KSPT++    D I++      L   P++ EV+EAV ++ N K VG D++  EL+KL L  +  +L+ FH  VV VW    VPQ+WKDA I VLFKK DT ECGN+RGISL AHAGK++L V A+RL
Sbjct:   22 VLRDPTFIRQRWARWFHKLFNTKSPTIDLHAADKIKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWLAGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLEVAAIRL 169
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5JTI2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.800e-35
Identity = 70/136 (51.47%), Postives = 89/136 (65.44%), Query Frame = 1 
Query:   37 KEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + W  +LLN KSPT++    D ++Q      L   P++ EV+EAV  + N K VG D++  EL+KL L  +   L+ FH  VV VWQ   VPQ+WKDA I VLFKK DT ECGN+RGISL AHAGK++L VVA RL
Sbjct:    2 QRWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRL 137
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5JRA2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA2_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.130e-35
Identity = 73/148 (49.32%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + +D   I  RW  W  +LLN KSPT++    D +++      L   P++ EV+EAV ++ N K VG D++  EL+KL L  +  +L+ FH  VV VWQ   VPQ+WKDA I VLFKK DT ECGN+RGISL AHAGK++L VVA RL
Sbjct:  187 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHTIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRL 334
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5L806_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L806_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.300e-35
Identity = 74/148 (50.00%), Postives = 95/148 (64.19%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + +D   I  RW  W  +LLN KSPT++    D +++      L   P++ EV+EAV +  N K VG D++  EL+KL L E   +L+ FH  VV VWQ   VPQ+WKDA I VLFKK DT ECGN+RGISL AHAGK++L VVA RL
Sbjct:   67 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVRERDNRKAVGPDDLPAELIKLFLDEGQGLLREFHAIVVNVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRL 214
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 7.600e-35
Identity = 72/148 (48.65%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + +D   I  RW  W  +LLN KSPT++    D ++Q   +  L   P++ EV+EAV ++ N K VG D++  EL+KL L  +  +L+ FH  VV VWQ   VPQ+WKDAII VLF++ DT ECGN+RGI L AHAGK++L VVA RL
Sbjct:   22 VLRDPTFIPQRWARWFHKLLNTKSPTIDLHAADKVKQWPTYVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDAIIKVLFREGDTMECGNYRGIPLVAHAGKVLLKVVATRL 169
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5L5I5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.640e-35
Identity = 69/145 (47.59%), Postives = 95/145 (65.52%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVA 435
            + +D   I  RW  W  +LLN KSPT++    D +++      L   P++ EV+EAV ++ N K VG D++  EL+KL L  +  +L+ FH ++V VWQ   VP++WKDA I VLFKK DT ECGN+RGISL AHAGK++L VVA
Sbjct:  150 VLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMTNRKAVGPDDLPAELIKLLLDGDQGLLREFHASLVDVWQTGDVPKQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVA 294
[Close]
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Match: A0A6H5JHD4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD4_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 9.630e-35
Identity = 67/148 (45.27%), Postives = 93/148 (62.84%), Query Frame = 1 
Query:    1 LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTVEEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQEVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL 444
            + +D   I  RW  W  +LLN +SPT++    D +++      L   P++ EV+EAV ++ N K VG D++  EL+KL L  +  +L+ FH  VV VWQ   +PQ+WKDA I +LFKK DT  CG++RGISL AHAG + L VVA RL
Sbjct:   22 VLRDPTFIRQRWARWFHKLLNTESPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHATVVDVWQTRDIPQQWKDASIKMLFKKGDTIACGDYRGISLVAHAGNVQLKVVATRL 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53579.12713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0F8_9PHAE1.450e-3749.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQE0_9PHAE1.010e-3647.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVM9_9PHAE3.700e-3647.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9V0_9PHAE3.800e-3647.97Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JTI2_9PHAE3.800e-3551.47Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JRA2_9PHAE4.130e-3549.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L806_9PHAE4.300e-3550.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZD4_9PHAE7.600e-3548.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5I5_9PHAE8.640e-3547.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHD4_9PHAE9.630e-3545.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53579contigH-elongata_contig53579:3291..3734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog7668.SPU_001615-tr
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.906842-CDS-H-elongata_contig53579:3290..37341622930873.906842-CDS-H-elongata_contig53579:3290..3734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53579 3291..3734 +
1691679606.6542752-CDS-H-elongata_contig53579:3290..37341691679606.6542752-CDS-H-elongata_contig53579:3290..3734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53579 3291..3734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53579.12713.1prot_H-elongata_contig53579.12713.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53579 3291..3734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53579.12713.1

>prot_H-elongata_contig53579.12713.1 ID=prot_H-elongata_contig53579.12713.1|Name=mRNA_H-elongata_contig53579.12713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
LFQDKPSILLRWKEWLQELLNAKSPTLNASILDGIEQLLEHALLAAEPTV
EEVKEAVGKLGNGKDVGVDNVCGELLKLGLSENSAILKYFHNNVVTVWQQ
EVVPQKWKDAIITVLFKKVDTYECGNFRGISLGAHAGKMVLNVVAMRL
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mRNA from alignment at H-elongata_contig53579:3291..3734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53579.12713.1 ID=mRNA_H-elongata_contig53579.12713.1|Name=mRNA_H-elongata_contig53579.12713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=444bp|location=Sequence derived from alignment at H-elongata_contig53579:3291..3734+ (Himanthalia elongata Himel1 dioecious)
TTGTTCCAGGACAAGCCGTCTATCCTACTTCGGTGGAAAGAGTGGCTCCA
GGAGCTTCTGAACGCGAAATCGCCGACTCTCAACGCCTCTATCCTCGACG
GCATCGAGCAGTTGCTCGAACACGCCCTGCTTGCGGCCGAGCCTACGGTG
GAGGAAGTGAAGGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGATGTCGG
CGTCGACAATGTCTGCGGTGAACTGCTGAAGCTCGGTCTCTCCGAGAACT
CCGCCATCCTGAAGTATTTCCACAACAATGTTGTCACCGTATGGCAGCAG
GAGGTAGTGCCACAGAAGTGGAAGGATGCTATCATCACAGTGCTCTTCAA
GAAAGTCGACACGTACGAGTGTGGAAACTTCCGCGGCATATCACTTGGGG
CTCATGCAGGCAAGATGGTTCTAAATGTGGTCGCGATGCGTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig53579:3291..3734+

>mRNA_H-elongata_contig53579.12713.1 ID=mRNA_H-elongata_contig53579.12713.1|Name=mRNA_H-elongata_contig53579.12713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig53579:3291..3734+ (Himanthalia elongata Himel1 dioecious)
TTGTTCCAGGACAAGCCGTCTATCCTACTTCGGTGGAAAGAGTGGCTCCA
GGAGCTTCTGAACGCGAAATCGCCGACTCTCAACGCCTCTATCCTCGACG
GCATCGAGCAGTTGCTCGAACACGCCCTGCTTGCGGCCGAGCCTACGGTG
GAGGAAGTGAAGGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGATGTCGG
CGTCGACAATGTCTGCGGTGAACTGCTGAAGCTCGGTCTCTCCGAGAACT
CCGCCATCCTGAAGTATTTCCACAACAATGTTGTCACCGTATGGCAGCAG
GAGGTAGTGCCACAGAAGTGGAAGGATGCTATCATCACAGTGCTCTTCAA
GAAAGTCGACACGTACGAGTGTGGAAACTTCCGCGGCATATCACTTGGGG
CTCATGCAGGCAAGATGGTTCTAAATGTGGTCGCGATGCGTCTCTTGTTC
CAGGACAAGCCGTCTATCCTACTTCGGTGGAAAGAGTGGCTCCAGGAGCT
TCTGAACGCGAAATCGCCGACTCTCAACGCCTCTATCCTCGACGGCATCG
AGCAGTTGCTCGAACACGCCCTGCTTGCGGCCGAGCCTACGGTGGAGGAA
GTGAAGGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGATGTCGGCGTCGA
CAATGTCTGCGGTGAACTGCTGAAGCTCGGTCTCTCCGAGAACTCCGCCA
TCCTGAAGTATTTCCACAACAATGTTGTCACCGTATGGCAGCAGGAGGTA
GTGCCACAGAAGTGGAAGGATGCTATCATCACAGTGCTCTTCAAGAAAGT
CGACACGTACGAGTGTGGAAACTTCCGCGGCATATCACTTGGGGCTCATG
CAGGCAAGATGGTTCTAAATGTGGTCGCGATGCGTCTC
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