mRNA_H-elongata_contig5354.12708.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5354.12708.1
Unique NamemRNA_H-elongata_contig5354.12708.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5354.12708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5354contigH-elongata_contig5354:5782..6678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size477
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.5346668-CDS-H-elongata_contig5354:5782..60521622930873.5346668-CDS-H-elongata_contig5354:5782..6052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5354 5783..6052 -
1691679606.5397544-CDS-H-elongata_contig5354:5782..60521691679606.5397544-CDS-H-elongata_contig5354:5782..6052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5354 5783..6052 -
1622930873.5482097-CDS-H-elongata_contig5354:6474..66781622930873.5482097-CDS-H-elongata_contig5354:6474..6678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5354 6475..6678 -
1691679606.5475636-CDS-H-elongata_contig5354:6474..66781691679606.5475636-CDS-H-elongata_contig5354:6474..6678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5354 6475..6678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5354.12708.1prot_H-elongata_contig5354.12708.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5354 5783..6678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5354.12708.1

>prot_H-elongata_contig5354.12708.1 ID=prot_H-elongata_contig5354.12708.1|Name=mRNA_H-elongata_contig5354.12708.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
EILAKRIELLDSEPEPERKREREAHVFAAVYAGLDHLPEAQREQFHLLAV
MSPGAIATTDMLANLWDAEVKDALACAELLVDRSLLQAVPEGYRLNGTVL
DYLWRTIQLTTITATTIHSDDARRPPPPAELASARQARYLSRPELLRGQH
FPVDLCSL
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mRNA from alignment at H-elongata_contig5354:5782..6678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5354.12708.1 ID=mRNA_H-elongata_contig5354.12708.1|Name=mRNA_H-elongata_contig5354.12708.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at H-elongata_contig5354:5782..6678- (Himanthalia elongata Himel1 dioecious)
GAGATCTTGGCCAAGAGAATCGAGCTCCTGGATTCCGAGCCCGAGCCCGA
ACGCAAGCGTGAGCGCGAGGCGCATGTGTTCGCCGCGGTCTACGCCGGTC
TTGACCACTTGCCAGAGGCGCAGAGGGAACAGTTTCATCTCCTGGCGGTG
ATGTCCCCGGGAGCGATCGCCACGACCGATATGTTGGCCAACTTGTGGGA
TGCGGTGGGTAGAGTAACATCCGGATGGTTCGACAATGGCACGTAACATG
TTGTGTGGAGAGTCACGGCGCATTGTTTTTGTTTTTGATCTTGCTGTGCC
ATCCCTTGCGCGCGCATATCTCCCCTCCTATATGCTGCAACATTACATGA
TCGACCTCAGGAAAGCGTTTTGTATCGTTACATGTAAATGCAAAGCGGAC
TGCATACAAATACGGCTCATCCATGTTTTCCTCTCGTGGGGCGAAATGGC
TCGACGAGCAAATGGCAACCGTCACGACCGTTCGCGGGGATGCCGAGCAG
CGAGCGGGTGAATAAGGGTCTCCGCCCACAAAATAAATGGCTACTTTCGT
ATGTGCGCACGTTCGGTAATCGGCGACGCACCAAAGCTCTCTCTCTCTCT
CTCTTCTCTCCACTCTCCATCTCCAGGAAGTCAAAGACGCCCTCGCCTGC
GCTGAGCTCCTGGTGGACCGCAGCCTGCTTCAAGCGGTGCCCGAGGGCTA
TCGCCTCAACGGAACGGTGCTCGATTACCTGTGGCGCACCATCCAGCTCA
CGACCATCACCGCCACCACTATCCATTCGGACGATGCGCGCCGTCCTCCT
CCACCCGCCGAGTTGGCCAGCGCACGCCAAGCCCGGTATCTGAGCAGGCC
CGAGCTCCTCCGCGGGCAGCATTTTCCCGTCGATCTGTGCTCGCTCG
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Coding sequence (CDS) from alignment at H-elongata_contig5354:5782..6678-

>mRNA_H-elongata_contig5354.12708.1 ID=mRNA_H-elongata_contig5354.12708.1|Name=mRNA_H-elongata_contig5354.12708.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig5354:5782..6678- (Himanthalia elongata Himel1 dioecious)
GAGATCTTGGCCAAGAGAATCGAGCTCCTGGATTCCGAGCCCGAGCCCGA
ACGCAAGCGTGAGCGCGAGGCGCATGTGTTCGCCGCGGTCTACGCCGGTC
TTGACCACTTGCCAGAGGCGCAGAGGGAACAGTTTCATCTCCTGGCGGTG
ATGTCCCCGGGAGCGATCGCCACGACCGATATGTTGGCCAACTTGTGGGA
TGCGGAGATCTTGGCCAAGAGAATCGAGCTCCTGGATTCCGAGCCCGAGC
CCGAACGCAAGCGTGAGCGCGAGGCGCATGTGTTCGCCGCGGTCTACGCC
GGTCTTGACCACTTGCCAGAGGCGCAGAGGGAACAGTTTCATCTCCTGGC
GGTGATGTCCCCGGGAGCGATCGCCACGACCGATATGTTGGCCAACTTGT
GGGATGCGGAAGTCAAAGACGCCCTCGCCTGCGCTGAGCTCCTGGTGGAC
CGCAGCCTGCTTCAAGCGGTGCCCGAGGGCTATCGCCTCAACGGAACGGT
GCTCGATTACCTGTGGCGCACCATCCAGCTCACGACCATCACCGCCACCA
CTATCCATTCGGACGATGCGCGCCGTCCTCCTCCACCCGCCGAGTTGGCC
AGCGCACGCCAAGCCCGGTATCTGAGCAGGCCCGAGCTCCTCCGCGGGCA
GCATTTTCCCGTCGATCTGTGCTCGCTCGAAGTCAAAGACGCCCTCGCCT
GCGCTGAGCTCCTGGTGGACCGCAGCCTGCTTCAAGCGGTGCCCGAGGGC
TATCGCCTCAACGGAACGGTGCTCGATTACCTGTGGCGCACCATCCAGCT
CACGACCATCACCGCCACCACTATCCATTCGGACGATGCGCGCCGTCCTC
CTCCACCCGCCGAGTTGGCCAGCGCACGCCAAGCCCGGTATCTGAGCAGG
CCCGAGCTCCTCCGCGGGCAGCATTTTCCCGTCGATCTGTGCTCGCTC
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