mRNA_H-elongata_contig53536.12705.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: D8LHL7_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL7_ECTSI) HSP 1 Score: 119 bits (298), Expect = 1.030e-31 Identity = 65/112 (58.04%), Postives = 74/112 (66.07%), Query Frame = 1
Query: 1 MGFKSPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKG-NKVAVFSWTRCSTALFLEKKIASRL-------FVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
MGFKSP+D LK+GI + AG YD+ AV + + Y G NKV VFSWTRC + I L FVELDE DG+AIR EL + TGRTSVPQIWI GEFVGGCNDG
Sbjct: 65 MGFKSPVDVLKQGIAKIGAGPYDKDAVVKVVDGYTSGSNKVVVFSWTRCPFCKKAKGLIEDLLADPADYEFVELDERQDGNAIRYELSQKTGRTSVPQIWIGGEFVGGCNDG 176
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A8J9RIT3_9CHLO (Probable Glutaredoxin at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIT3_9CHLO) HSP 1 Score: 108 bits (270), Expect = 1.350e-27 Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTALFLEKKI----ASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
SP + +K+ I A+AG YDE A+ + YIK N V VFSWTRC + ++++ A L VELD M DG+AIR+EL + T RTS+P +WI+GE +GGCNDG
Sbjct: 67 SPANAVKKAIAAAQAGQYDEAAIGGKVDAYIKDNPVVVFSWTRCPFCIKAKRELDSLNAKYLAVELDTMADGNAIRSELAKRTNRTSMPNVWINGEGIGGCNDG 170
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: K0TLI2_THAOC (Glutaredoxin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLI2_THAOC) HSP 1 Score: 98.6 bits (244), Expect = 9.980e-24 Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 13 SPLDGL-------KRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTALFLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
SPLD + K G+V++ AG+YD A++ + Q I NKV ++S+T L++K A +ELD+ DG AIR ELG++ GRTSVP IWIDG+F+GGCNDG
Sbjct: 58 SPLDNILGFIKGGKIGLVKSIAGEYDADAIRLRVDQDIAKNKVLMYSFTTVKAKAVLDEKNAKYTAIELDKDEDGKAIRAELGDILGRTSVPAIWIDGKFIGGCNDG 164
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A835YLP8_9STRA (Selenoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 3.170e-22 Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTALFLEKKIASRL------FVELDEMGD-GDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
SP + K+ I +A G+Y+E V I YI NKV VFSWT C + ++A + VELD+ + G A R EL ++TGRTSVPQIWI GEF+GGCNDG
Sbjct: 57 SPFNQFKKFIAKAGTGEYNEAEVAGKINSYIADNKVMVFSWTNCPFCKKAKAQLAELMEPSQYKVVELDQDAELGKAYRFELSKITGRTSVPQIWIKGEFIGGCNDG 163
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A2P6TGA2_CHLSO (Glyoxalase domain-containing 4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGA2_CHLSO) HSP 1 Score: 90.5 bits (223), Expect = 9.930e-21 Identity = 51/105 (48.57%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 19 LDGLKRGIVRAK---AGDYDEGAVQEAIGQYIKGNKVAVFSWTRCS----TALFLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
LD +G V+A AG YDE A + AI +YI N V VFSW+ C L+ A +ELD+M DG A+R EL + TGR+SVP IWI G+ VGGCNDG
Sbjct: 47 LDFFNQGKVQAAVAAAGQYDEAATKAAIEKYIADNPVVVFSWSGCPFCKRAKAVLDATGAKYTALELDQMADGKALRAELAKKTGRSSVPNIWIAGQNVGGCNDG 151
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A383W3I8_TETOB (Glutaredoxin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3I8_TETOB) HSP 1 Score: 90.5 bits (223), Expect = 1.380e-20 Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 1
Query: 13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRC----STALFLEKKIASRLFVELDEMG-DGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
SP++ K+ + +A+AGDYDE AV+ I IK NKV VFSW+ C + L A +ELD +G +G IR EL MT RTSVP IWI G+ VGGCNDG
Sbjct: 60 SPINEGKKALAKAQAGDYDEKAVRGKIEGLIKDNKVMVFSWSGCPFCKNAKALLSDVGADFTALELDTLGQEGKQIRAELAAMTERTSVPNIWIAGKNVGGCNDG 164
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: F0YJ46_AURAN (Selenoprotein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ46_AURAN) HSP 1 Score: 89.7 bits (221), Expect = 2.340e-20 Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 1
Query: 13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTR---CSTAL-FLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
SPL+ K+ +V+ AG YDE AV+ + I G V + S+ R C A L+ K A VELDE+ DG A+R ELG + GRTSVP IWI +FVGGCNDG
Sbjct: 55 SPLNEGKKAVVKMLAGPYDEVAVRAKLDGLIAGEPVLMLSFVRXPFCVKAKQLLDAKGAKYTVVELDEVSDGPALRAELGGLVGRTSVPAIWIQSDFVGGCNDG 158
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A2V0PHJ4_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHJ4_9CHLO) HSP 1 Score: 88.6 bits (218), Expect = 7.230e-20 Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 10 KSPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCS----TALFLEKKIASRLFVELDEMG-DGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
+SPL+ K+ + + +AGDYDE AV+ + + G V +FS++ C L + AS +EL+EMG DG +R EL +MT RTS+P IWI G FVGGCNDG
Sbjct: 56 ESPLNKGKKALAKLQAGDYDEAAVRAKLEGILTGTPVVMFSFSTCPFCNRAKALLNELGASYEAIELNEMGKDGMQLRAELAQMTDRTSMPSIWIQGSFVGGCNDG 161
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A1Z5KEB6_FISSO (Glutaredoxin domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEB6_FISSO) HSP 1 Score: 87.0 bits (214), Expect = 2.740e-19 Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 19 LDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTAL----FLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
L K+ +VR AG+YD AV+ I IK N V + S+T C + L+ K A+ VEL+E G AIR EL ++ GR+SVP IWI GEF+GGCNDG
Sbjct: 57 LKDAKKALVRKLAGEYDSEAVRARIDNLIKTNDVLMLSFTTCPYCIKAKQVLDAKSANYTVVELNEDPAGTAIRAELFDLVGRSSVPAIWIGGEFIGGCNDG 158
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A061R5D6_9CHLO (Glutaredoxin-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R5D6_9CHLO) HSP 1 Score: 85.9 bits (211), Expect = 1.590e-18 Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTAL----FLEKKIASRLFVELDEMG-DGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
SPL+ K + + +AGDYD+ AV+ + I KV VFS++ C + L+ A VEL++MG +G AIR EL E+TGRTS+P IWI GE +GGCNDG
Sbjct: 86 SPLNKGKIELAKLQAGDYDKTAVRAKVENXISSEKVVVFSFSTCPFCVKAKELLQDVGAEYEAVELNDMGKEGYAIRAELAELTGRTSMPNIWIAGEGIGGCNDG 190 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53536.12705.1 >prot_H-elongata_contig53536.12705.1 ID=prot_H-elongata_contig53536.12705.1|Name=mRNA_H-elongata_contig53536.12705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp MGFKSPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTback to top mRNA from alignment at H-elongata_contig53536:1350..2457+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53536.12705.1 ID=mRNA_H-elongata_contig53536.12705.1|Name=mRNA_H-elongata_contig53536.12705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-elongata_contig53536:1350..2457+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53536:1350..2457+ >mRNA_H-elongata_contig53536.12705.1 ID=mRNA_H-elongata_contig53536.12705.1|Name=mRNA_H-elongata_contig53536.12705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig53536:1350..2457+ (Himanthalia elongata Himel1 dioecious)back to top |