mRNA_H-elongata_contig53528.12704.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53528.12704.1
Unique NamemRNA_H-elongata_contig53528.12704.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53528.12704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53528contigH-elongata_contig53528:590..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53528.12704.1prot_H-elongata_contig53528.12704.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53528 624..950 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.733998-UTR-H-elongata_contig53528:589..6231622930872.733998-UTR-H-elongata_contig53528:589..623Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53528 590..623 +
1691679606.3379114-UTR-H-elongata_contig53528:589..6231691679606.3379114-UTR-H-elongata_contig53528:589..623Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53528 590..623 +
1622930872.807622-UTR-H-elongata_contig53528:950..11651622930872.807622-UTR-H-elongata_contig53528:950..1165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53528 951..1165 +
1691679606.355792-UTR-H-elongata_contig53528:950..11651691679606.355792-UTR-H-elongata_contig53528:950..1165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53528 951..1165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.7777708-CDS-H-elongata_contig53528:623..9501622930872.7777708-CDS-H-elongata_contig53528:623..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53528 624..950 +
1691679606.3470354-CDS-H-elongata_contig53528:623..9501691679606.3470354-CDS-H-elongata_contig53528:623..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53528 624..950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53528.12704.1

>prot_H-elongata_contig53528.12704.1 ID=prot_H-elongata_contig53528.12704.1|Name=mRNA_H-elongata_contig53528.12704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MEGVQGQVVAALGSTHSGLGRPGCSPAFPRGLLPDGINKRCLRSSGQAEP
GWHHPAGRPHRPRGLSLRAINKTEIIIGFIQTCRWTERHGDRRLARNICR
VPPDFFAP*
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mRNA from alignment at H-elongata_contig53528:590..1165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53528.12704.1 ID=mRNA_H-elongata_contig53528.12704.1|Name=mRNA_H-elongata_contig53528.12704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at H-elongata_contig53528:590..1165+ (Himanthalia elongata Himel1 dioecious)
GCCGCACGTTTAGGAGGGTCCAGCTCAGGGCTTCATGGAAGGAGTGCAAG
GACAAGTCGTTGCGGCACTCGGCAGCACCCATTCTGGACTTGGTAGGCCT
GGCTGTTCCCCTGCTTTTCCTCGTGGGCTTCTCCCTGACGGGATAAATAA
GCGTTGCCTTAGGTCTTCGGGCCAAGCAGAGCCAGGATGGCACCACCCCG
CTGGTCGCCCGCACAGACCGCGTGGCCTATCTTTGCGCGCAATTAATAAA
ACGGAAATAATAATCGGATTCATACAGACATGTAGGTGGACAGAAAGACA
TGGAGACAGACGTTTAGCGCGCAATATATGCCGAGTTCCTCCGGATTTTT
TTGCACCGTGACAGATTTGTCAACGTGTGTGTATGTATGTGAGCGTGTGC
TTCCAGCACGTTTTTGGCGCATGGTAACGTACCATCGTAGGTAGGCACCC
CTCGGTTGCGAGTGAGGGAGGCGAGGAGGGCGCGTCTGGTAGTATGTGTA
TATCTTCATTATGTTAATACTGTATAAGGGACGTTGTTCCAAGCAGGGAT
CAAATTTTGACGATTTTGCTGGTAAT
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Coding sequence (CDS) from alignment at H-elongata_contig53528:590..1165+

>mRNA_H-elongata_contig53528.12704.1 ID=mRNA_H-elongata_contig53528.12704.1|Name=mRNA_H-elongata_contig53528.12704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig53528:590..1165+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGGAGTGCAAGGACAAGTCGTTGCGGCACTCGGCAGCACCCATTC
TGGACTTGGTAGGCCTGGCTGTTCCCCTGCTTTTCCTCGTGGGCTTCTCC
CTGACGGGATAAATAAGCGTTGCCTTAGGTCTTCGGGCCAAGCAGAGCCA
GGATGGCACCACCCCGCTGGTCGCCCGCACAGACCGCGTGGCCTATCTTT
GCGCGCAATTAATAAAACGGAAATAATAATCGGATTCATACAGACATGTA
GGTGGACAGAAAGACATGGAGACAGACGTTTAGCGCGCAATATATGCCGA
GTTCCTCCGGATTTTTTTGCACCGTGAATGGAAGGAGTGCAAGGACAAGT
CGTTGCGGCACTCGGCAGCACCCATTCTGGACTTGGTAGGCCTGGCTGTT
CCCCTGCTTTTCCTCGTGGGCTTCTCCCTGACGGGATAAATAAGCGTTGC
CTTAGGTCTTCGGGCCAAGCAGAGCCAGGATGGCACCACCCCGCTGGTCG
CCCGCACAGACCGCGTGGCCTATCTTTGCGCGCAATTAATAAAACGGAAA
TAATAATCGGATTCATACAGACATGTAGGTGGACAGAAAGACATGGAGAC
AGACGTTTAGCGCGCAATATATGCCGAGTTCCTCCGGATTTTTTTGCACC
GTGA
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