mRNA_H-elongata_contig53524.12702.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53524.12702.1
Unique NamemRNA_H-elongata_contig53524.12702.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53524.12702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53524contigH-elongata_contig53524:2420..3789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.6025677-CDS-H-elongata_contig53524:2420..28401622930872.6025677-CDS-H-elongata_contig53524:2420..2840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53524 2421..2840 -
1691679606.305669-CDS-H-elongata_contig53524:2420..28401691679606.305669-CDS-H-elongata_contig53524:2420..2840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53524 2421..2840 -
1622930872.6206613-CDS-H-elongata_contig53524:3621..37891622930872.6206613-CDS-H-elongata_contig53524:3621..3789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53524 3622..3789 -
1691679606.3146677-CDS-H-elongata_contig53524:3621..37891691679606.3146677-CDS-H-elongata_contig53524:3621..3789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53524 3622..3789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53524.12702.1prot_H-elongata_contig53524.12702.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53524 2421..3789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53524.12702.1

>prot_H-elongata_contig53524.12702.1 ID=prot_H-elongata_contig53524.12702.1|Name=mRNA_H-elongata_contig53524.12702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
RVNGCDKEARELAAAHAAQLGVKDREIAKLQQSLASAVDEKSDTNEDIRR
SEDALEERLREKDAEISRLLLLHHKNLNNIKDDNDNDIKDDNDNENENNP
TRKNSAQSVGGVTDEDGGGSSWSASTSSSSSSGVSPPSRAYSHLDPTPPA
VAAAAPLTQGRGEGRSYGGGGGAKKDASERRSWSDAKNGGGDAHRG
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mRNA from alignment at H-elongata_contig53524:2420..3789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53524.12702.1 ID=mRNA_H-elongata_contig53524.12702.1|Name=mRNA_H-elongata_contig53524.12702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1370bp|location=Sequence derived from alignment at H-elongata_contig53524:2420..3789- (Himanthalia elongata Himel1 dioecious)
AGGGTCAACGGCTGCGACAAGGAAGCTCGGGAACTGGCCGCCGCGCATGC
TGCACAGCTCGGCGTGAAGGATCGAGAGATTGCAAAGCTTCAGCAATCCC
TCGCCTCCGCTGTCGACGAAAAATCCGACACGAACGAGGATATTCGGAGA
TCTGAAGATGCGTTGGAGGCAAGTCTCGTCCGCAACAAGGATTTTTCTTT
TTCTTTTTTTTTCTCGCTTTTGTTTGTTTATTTGTTTGTTTGCCGATATT
CTCCCTTATCTTTCGATACTCTCTGGTTTAAAAACTCCCCCCCCCACCGG
ATTCTGGAATCTAGGCGTGCAGCACCTTTTTGTGTGTTGTCATCCCATAT
ATTCTGGGCGTCAAACTTGTAGAGGCATGCACCAGCCGGGGTCACACAGC
AGGAAGGTCACACAGGATTTCTCCGCTTCGTCGATCGGGAAGTCGATTTT
TGTGTACCCACGGTATAGTATTCGTTCTCCACTTGTTGGACATGATGTGA
AATGAAATTCCAGTTCGTGTGACTGCGCCGAGATTCCAACTCACGTCGCA
ACATCAGAAGGTTTCGGCGTTACCAACTGTACCACCGGGGTCACCGGACA
TGTAGGATGAAAATGGGTGATCGCTGTGGAATCGATTACAACTTCGCCGT
CATCATTCATCATTATTAAGCATACCTATATTTTTTTGATCTAGAGCCTA
ATGATTTCTTCTCTCCATCTCTGCTATAAGTACCTCGATAAAGCGGGACT
GTTAATAAAGCGGGACTGTCAATAAAGCGGGACTGTCAATGAAGCGGGAC
TGTTAATGAAGCGGGACTGTCATCCAATTCCATTCAATTTCACTTATTAC
TAGTCGAAGTCGCCGATGCGTGTGCTTCCTTAGAGAAGGTCTGAATGAGC
TCATTTTTTTTCTCTCTCTCTCTCTCTCTTACCTTTCGACCCTCCTCAGG
AACGCCTACGTGAAAAAGATGCCGAGATTTCCCGCCTCCTCCTCCTTCAC
CACAAGAACCTGAACAACATCAAGGACGACAATGACAACGACATCAAGGA
CGACAATGACAACGAGAACGAGAACAACCCTACCCGAAAGAACAGCGCGC
AAAGCGTGGGCGGGGTCACAGACGAGGACGGAGGCGGGAGCTCGTGGTCG
GCCTCGACTTCCTCTTCGTCTTCGTCCGGAGTGTCTCCGCCGTCCAGGGC
CTACTCGCACTTGGATCCCACCCCTCCTGCTGTTGCCGCGGCGGCGCCCC
TTACCCAAGGGCGGGGGGAGGGTCGCTCCTACGGTGGAGGAGGTGGCGCC
AAGAAGGACGCGAGCGAGAGGCGTTCTTGGAGCGACGCCAAGAACGGGGG
CGGAGATGCACACCGCGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig53524:2420..3789-

>mRNA_H-elongata_contig53524.12702.1 ID=mRNA_H-elongata_contig53524.12702.1|Name=mRNA_H-elongata_contig53524.12702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig53524:2420..3789- (Himanthalia elongata Himel1 dioecious)
AGGGTCAACGGCTGCGACAAGGAAGCTCGGGAACTGGCCGCCGCGCATGC
TGCACAGCTCGGCGTGAAGGATCGAGAGATTGCAAAGCTTCAGCAATCCC
TCGCCTCCGCTGTCGACGAAAAATCCGACACGAACGAGGATATTCGGAGA
TCTGAAGATGCGTTGGAGAGGGTCAACGGCTGCGACAAGGAAGCTCGGGA
ACTGGCCGCCGCGCATGCTGCACAGCTCGGCGTGAAGGATCGAGAGATTG
CAAAGCTTCAGCAATCCCTCGCCTCCGCTGTCGACGAAAAATCCGACACG
AACGAGGATATTCGGAGATCTGAAGATGCGTTGGAGGAACGCCTACGTGA
AAAAGATGCCGAGATTTCCCGCCTCCTCCTCCTTCACCACAAGAACCTGA
ACAACATCAAGGACGACAATGACAACGACATCAAGGACGACAATGACAAC
GAGAACGAGAACAACCCTACCCGAAAGAACAGCGCGCAAAGCGTGGGCGG
GGTCACAGACGAGGACGGAGGCGGGAGCTCGTGGTCGGCCTCGACTTCCT
CTTCGTCTTCGTCCGGAGTGTCTCCGCCGTCCAGGGCCTACTCGCACTTG
GATCCCACCCCTCCTGCTGTTGCCGCGGCGGCGCCCCTTACCCAAGGGCG
GGGGGAGGGTCGCTCCTACGGTGGAGGAGGTGGCGCCAAGAAGGACGCGA
GCGAGAGGCGTTCTTGGAGCGACGCCAAGAACGGGGGCGGAGATGCACAC
CGCGGAGAACGCCTACGTGAAAAAGATGCCGAGATTTCCCGCCTCCTCCT
CCTTCACCACAAGAACCTGAACAACATCAAGGACGACAATGACAACGACA
TCAAGGACGACAATGACAACGAGAACGAGAACAACCCTACCCGAAAGAAC
AGCGCGCAAAGCGTGGGCGGGGTCACAGACGAGGACGGAGGCGGGAGCTC
GTGGTCGGCCTCGACTTCCTCTTCGTCTTCGTCCGGAGTGTCTCCGCCGT
CCAGGGCCTACTCGCACTTGGATCCCACCCCTCCTGCTGTTGCCGCGGCG
GCGCCCCTTACCCAAGGGCGGGGGGAGGGTCGCTCCTACGGTGGAGGAGG
TGGCGCCAAGAAGGACGCGAGCGAGAGGCGTTCTTGGAGCGACGCCAAGA
ACGGGGGCGGAGATGCACACCGCGGA
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