mRNA_H-elongata_contig53519.12700.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53519.12700.1
Unique NamemRNA_H-elongata_contig53519.12700.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53519.12700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53519contigH-elongata_contig53519:2564..3948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1385
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53519.12700.1prot_H-elongata_contig53519.12700.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53519 2852..3559 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.4660263-UTR-H-elongata_contig53519:2563..28511622930872.4660263-UTR-H-elongata_contig53519:2563..2851Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53519 2564..2851 +
1691679606.2719357-UTR-H-elongata_contig53519:2563..28511691679606.2719357-UTR-H-elongata_contig53519:2563..2851Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53519 2564..2851 +
1622930872.5011017-UTR-H-elongata_contig53519:3559..39481622930872.5011017-UTR-H-elongata_contig53519:3559..3948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53519 3560..3948 +
1691679606.2888494-UTR-H-elongata_contig53519:3559..39481691679606.2888494-UTR-H-elongata_contig53519:3559..3948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53519 3560..3948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.4806209-CDS-H-elongata_contig53519:2851..35591622930872.4806209-CDS-H-elongata_contig53519:2851..3559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53519 2852..3559 +
1691679606.2810316-CDS-H-elongata_contig53519:2851..35591691679606.2810316-CDS-H-elongata_contig53519:2851..3559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53519 2852..3559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53519.12700.1

>prot_H-elongata_contig53519.12700.1 ID=prot_H-elongata_contig53519.12700.1|Name=mRNA_H-elongata_contig53519.12700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
MLGYLHTGIICCPKRFYVLSTLLKYSRFPPILYPFLSRFKLLIEYYSTGY
YKPFFYTLPLEAILISVVTVCRLLYSTVLVLYTPLSWFVFSAFPTVYSLF
YTKYSPFSLQFTLYFILNILRFPYSLLFILYYILYTKYYNIHTLYTTYYI
LFTLSSRAQTGLANAKRSGCGLARAPSVSVNNSRTYPFCILQGALTYTSS
AFMRGRNIIVPAFRRSPSGNPIVALHVRYLKKNRG*
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mRNA from alignment at H-elongata_contig53519:2564..3948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53519.12700.1 ID=mRNA_H-elongata_contig53519.12700.1|Name=mRNA_H-elongata_contig53519.12700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1385bp|location=Sequence derived from alignment at H-elongata_contig53519:2564..3948+ (Himanthalia elongata Himel1 dioecious)
GGAAACGCTACCGTCATCACTGTCTTCAGAAGCGCTGATGGTTGACAACG
TCGTACAGCTGGCATTTCTCGTGGCGATCTAGAGCAAACAGTACAGAATA
GACACGATACGTCATAGGAAGATTGACACGATACGTCACACACGATACGA
TACGTCATAGGAAGATTGACGAAGAGGTGAACTTAGGTGTGGGGCCTCCA
GCCTCCTGCCAATCGAGATAATTAAATACAGTAAACTGGTATAAAAATTG
CAAGATCACGTAGCATATGAAGAGGTGATTCGTTAAGCATGTTGGGTTAT
CTACATACCGGTATCATATGTTGTCCTAAGAGGTTTTATGTCTTATCTAC
TCTACTTAAATATTCCCGGTTCCCGCCTATACTGTACCCCTTTCTGTCGC
GATTCAAGCTATTAATAGAGTATTACAGTACAGGGTATTATAAGCCCTTT
TTCTACACTCTACCCCTTGAAGCTATTTTAATTAGTGTAGTAACGGTATG
TAGACTTCTATACAGTACAGTACTTGTACTCTATACCCCTTTATCTTGGT
TTGTTTTCTCCGCTTTCCCTACAGTATACTCTTTATTTTATACTAAATAT
TCTCCGTTTTCCCTACAGTTTACTCTTTATTTTATACTAAATATTCTCCG
CTTTCCCTACAGTTTACTCTTTATTTTATACTACATATTGTATACTAAAT
ACTATAATATACATACATTGTATACTACATACTATATATTGTTTACACTA
TCCAGCAGGGCGCAAACCGGCTTGGCAAACGCGAAGCGAAGTGGGTGTGG
TTTGGCTAGGGCCCCATCGGTTAGTGTAAATAATTCCCGAACATATCCAT
TCTGCATTCTACAAGGTGCCCTCACGTACACATCGAGCGCTTTCATGAGG
GGACGAAACATAATTGTCCCCGCTTTTCGAAGGTCCCCTTCCGGGAATCC
AATCGTAGCGCTTCATGTCCGATACTTAAAAAAAAATAGGGGATGAATAC
GTTTTGTCCCCAGGAGGGGAACAATTTAACATGTCCACTCTCTGAACCGG
GGACGTTTTACCGAATTCGCCCCTGCCCCCTATCGTTGATTACTTCAATA
CAATACAAGAGTGTTTTCAAATAAAAAATAATTCCGTATCATAGAGGTGG
ATGTTGGACATGCATTTTTTTTTTTATGAAGAAGGAAAAAATTATTCTAA
GGCCGGGTCTTATCGTGTTTTCAGACAAACCTTTATTTTTTCTTAAAAAT
ATGAACTCAATCAAACCCTCCGAACATCTAAACTTTATGGCCTCTTACCT
CTCGGTGGTGAGCGCCATCGGTACGCAACTGCGTGGCCTGATAAAATCGG
GATTGACCCGATGGCGGTTGACAGTAGAGATGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig53519:2564..3948+

>mRNA_H-elongata_contig53519.12700.1 ID=mRNA_H-elongata_contig53519.12700.1|Name=mRNA_H-elongata_contig53519.12700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig53519:2564..3948+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGGTTATCTACATACCGGTATCATATGTTGTCCTAAGAGGTTTTA
TGTCTTATCTACTCTACTTAAATATTCCCGGTTCCCGCCTATACTGTACC
CCTTTCTGTCGCGATTCAAGCTATTAATAGAGTATTACAGTACAGGGTAT
TATAAGCCCTTTTTCTACACTCTACCCCTTGAAGCTATTTTAATTAGTGT
AGTAACGGTATGTAGACTTCTATACAGTACAGTACTTGTACTCTATACCC
CTTTATCTTGGTTTGTTTTCTCCGCTTTCCCTACAGTATACTCTTTATTT
TATACTAAATATTCTCCGTTTTCCCTACAGTTTACTCTTTATTTTATACT
AAATATTCTCCGCTTTCCCTACAGTTTACTCTTTATTTTATACTACATAT
TGTATACTAAATACTATAATATACATACATTGTATACTACATACTATATA
TTGTTTACACTATCCAGCAGGGCGCAAACCGGCTTGGCAAACGCGAAGCG
AAGTGGGTGTGGTTTGGCTAGGGCCCCATCGGTTAGTGTAAATAATTCCC
GAACATATCCATTCTGCATTCTACAAGGTGCCCTCACGTACACATCGAGC
GCTTTCATGAGGGGACGAAACATAATTGTCCCCGCTTTTCGAAGGTCCCC
TTCCGGGAATCCAATCGTAGCGCTTCATGTCCGATACTTAAAAAAAAATA
GGGGATGAATGTTGGGTTATCTACATACCGGTATCATATGTTGTCCTAAG
AGGTTTTATGTCTTATCTACTCTACTTAAATATTCCCGGTTCCCGCCTAT
ACTGTACCCCTTTCTGTCGCGATTCAAGCTATTAATAGAGTATTACAGTA
CAGGGTATTATAAGCCCTTTTTCTACACTCTACCCCTTGAAGCTATTTTA
ATTAGTGTAGTAACGGTATGTAGACTTCTATACAGTACAGTACTTGTACT
CTATACCCCTTTATCTTGGTTTGTTTTCTCCGCTTTCCCTACAGTATACT
CTTTATTTTATACTAAATATTCTCCGTTTTCCCTACAGTTTACTCTTTAT
TTTATACTAAATATTCTCCGCTTTCCCTACAGTTTACTCTTTATTTTATA
CTACATATTGTATACTAAATACTATAATATACATACATTGTATACTACAT
ACTATATATTGTTTACACTATCCAGCAGGGCGCAAACCGGCTTGGCAAAC
GCGAAGCGAAGTGGGTGTGGTTTGGCTAGGGCCCCATCGGTTAGTGTAAA
TAATTCCCGAACATATCCATTCTGCATTCTACAAGGTGCCCTCACGTACA
CATCGAGCGCTTTCATGAGGGGACGAAACATAATTGTCCCCGCTTTTCGA
AGGTCCCCTTCCGGGAATCCAATCGTAGCGCTTCATGTCCGATACTTAAA
AAAAAATAGGGGATGA
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