mRNA_H-elongata_contig53519.12699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53519.12699.1
Unique NamemRNA_H-elongata_contig53519.12699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53519.12699.1 vs. uniprot
Match: D7FRU4_ECTSI (BZIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU4_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.190e-23
Identity = 111/294 (37.76%), Postives = 137/294 (46.60%), Query Frame = 3 
Query:  303 LAVTSGVGTPILPLTFVPAF-GPLGGNPAVTSAAFSALPSL-VGELTYAAASGWKRPRSAENETCGAHDG---GQTRLLSSSSIRGKGQATAPNNPVNKRAKRQERLMKNREAANRSRIKRKEIQSELENRVATLSSSLTASREENDTLKQEMAXXXXXXSFLRGMLSARGSANELSHVLPTSA----IRKLSGSDGVAGVEVATGMSAVVGAIGTVLAVVSYAGPSETNSV------------------------QDVDDQTLGNLSGIESRQAGGRRMLLSLE------SYP 1067
            LAV+SG GTPILPL F P F G    +        SA P+L       AA    KR R  +    GA  G                          + KRA+R+ERLMKNREAANRSR+KRKE+ SELENR  TLS SL ASR+E  +LKQE+A      SFLRGMLSA GSA +L  ++P+ A    +R      G            ++GA+GT LAV+S    S                             + V +    + SG  SR  GGRR LLS++      SYP
Sbjct:  211 LAVSSGAGTPILPLAFTPRFSGTSNSSXXXXXXXLSAFPALNFSGFQAAAGQALKRLRGGD-APAGAASGQPCAXXXXXXXXXXXXXXXXXXXXGRITKRARREERLMKNREAANRSRVKRKEVLSELENRADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSAIDLPPIMPSGASSDSLRSHRNGGGRXXXXXXXXXXXIIGAVGTGLAVISCVALSAXXXXXXXXXXXEPRAGYNGGFXXXXGDGRGVGESAYASRSGFGSRSMGGRRTLLSVDESDSFDSYP 503
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53519.12699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRU4_ECTSI2.190e-2337.76BZIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53519contigH-elongata_contig53519:16..2643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper domain protein
Ec32 orthologEc-25_000410.1
Exons2
Model size2187
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53519.12699.1prot_H-elongata_contig53519.12699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53519 851..2419 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.3686707-UTR-H-elongata_contig53519:15..8501622930872.3686707-UTR-H-elongata_contig53519:15..850Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53519 16..850 -
1691679606.2327123-UTR-H-elongata_contig53519:15..8501691679606.2327123-UTR-H-elongata_contig53519:15..850Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53519 16..850 -
1622930872.4205709-UTR-H-elongata_contig53519:2419..26431622930872.4205709-UTR-H-elongata_contig53519:2419..2643Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53519 2420..2643 -
1691679606.2620819-UTR-H-elongata_contig53519:2419..26431691679606.2620819-UTR-H-elongata_contig53519:2419..2643Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53519 2420..2643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.3850293-CDS-H-elongata_contig53519:850..15551622930872.3850293-CDS-H-elongata_contig53519:850..1555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53519 851..1555 -
1691679606.240355-CDS-H-elongata_contig53519:850..15551691679606.240355-CDS-H-elongata_contig53519:850..1555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53519 851..1555 -
1622930872.3996534-CDS-H-elongata_contig53519:1996..24191622930872.3996534-CDS-H-elongata_contig53519:1996..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53519 1997..2419 -
1691679606.2478385-CDS-H-elongata_contig53519:1996..24191691679606.2478385-CDS-H-elongata_contig53519:1996..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53519 1997..2419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53519.12699.1

>prot_H-elongata_contig53519.12699.1 ID=prot_H-elongata_contig53519.12699.1|Name=mRNA_H-elongata_contig53519.12699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=376bp
MMASSKAESQPTWQAACSNDDISPKPLAVTSGVGTPILPLTFVPAFGPLG
GNPAVTSAAFSALPSLVGELTYAAASGWKRPRSAENETCGAHDGGQTRLL
SSSSIRGKGQATAPNNPVNKRAKRQERLMKNREAANRSRIKRKEIQSELE
NRVATLSSSLTASREENDTLKQEMAALREDNSFLRGMLSARGSANELSHV
LPTSAIRKLSGSDGVAGVEVATGMSAVVGAIGTVLAVVSYAGPSETNSVQ
DVDDQTLGNLSGIESRQAGGRRMLLSLESYPFKAAGDQSAAGITAVVRCV
MESETVRFVGLGLTLIAIVTLLFHLARSIYNVALQHANGGHGRQVGIMSK
AFQRKSRQNGKKCSRLIGCGICHVQ*
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mRNA from alignment at H-elongata_contig53519:16..2643-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53519.12699.1 ID=mRNA_H-elongata_contig53519.12699.1|Name=mRNA_H-elongata_contig53519.12699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2628bp|location=Sequence derived from alignment at H-elongata_contig53519:16..2643- (Himanthalia elongata Himel1 dioecious)
AGATCGCCACGAGAAATGCCAGCTGTACGACGTTGTCAACCATCAGCGCT
TCTGAAGACAGTGATGACGGTAGCGTTTCCGTATGCCCGGCGGCCGAGAT
AATCGGCATTACCAAGAGAGGAATCGTCAGTACCAAGACAGTACAAGGAG
AAGGAGAGGGAGACGGTTGGCAGAACGCTTTGGACTGCGGCCAGCGAAGC
CCCAGCACGATCACGAGCACGAGCATGATGGCATCGTCAAAAGCAGAATC
GCAACCAACGTGGCAAGCAGCATGCAGCAATGACGACATCAGTCCGAAGC
CTTTGGCGGTTACTTCCGGCGTGGGGACGCCCATTCTGCCCTTGACGTTT
GTACCCGCATTTGGTCCGCTCGGCGGAAACCCCGCCGTTACCTCGGCGGC
ATTCTCCGCCTTGCCTAGCCTCGTTGGTGAATTGACCTACGCCGCGGCTA
GCGGGTGGAAACGGCCGAGGAGTGCGGAAAACGAAACCTGTGGAGCGCAT
GATGGTGGCCAAACGCGACTTCTATCATCGTCCAGTATTCGAGGGAAAGG
TCAAGCGACTGCCCCGAATAACCCGGTGAATAAGAGAGCCAAGCGGCAGG
AACGTCTCATGAAGAACAGAGAGGCCGCCAATCGCTCCCGTATCAAGGTG
ATGCTTGACTTCAATAGAAACGTGCGCTTGGAGTGGTGGTATGATTTATT
GGGAATACTGTACTGGGATTACTGCACTGTGCTGTACTATACTATACTAT
ACTGTATTGATTATACCAGGGGGTAGGGTTAGGTAGGTAGGTAGGGTGGT
ATCATGCAAGATCTACGGCCACAGTACACAAAATGTAAAATGCGCCCATA
TTCGTGGCTAAGGAAGAAGATATGCGTTTTTATCTATCTAGTCTGATTAC
ACTGCAGTACAGTGCAGTACAGTACAGTATAGTACAGTACATGGTAATAA
TATAATATTATTAGTGAAATAATCCACGGTATCGGTAATAATTTTCATCG
ACTCCCCTGGCTTTTGGATTTTGGGGTGAAATCGCTAACCACCGCTGCAT
ATGCGCGTTTGCATTAAATAATATCCTTTCACCAACAGCGCAAGGAAATC
CAAAGTGAGCTGGAAAACCGCGTAGCGACACTTTCAAGCAGCCTAACAGC
ATCTCGCGAGGAAAACGACACCCTGAAACAGGAGATGGCCGCTCTGAGGG
AAGACAACTCTTTCCTCAGGGGCATGCTCTCCGCTAGAGGCAGCGCCAAT
GAACTGTCACATGTTCTGCCCACCTCGGCCATCCGGAAGCTGAGTGGAAG
TGACGGAGTCGCCGGAGTTGAGGTGGCCACAGGCATGAGTGCGGTCGTCG
GAGCTATCGGCACGGTACTGGCGGTCGTGAGCTACGCCGGACCCTCCGAA
ACGAACTCTGTCCAGGACGTGGACGACCAAACTCTCGGCAATTTGAGTGG
CATTGAATCCAGGCAGGCAGGGGGCCGGAGAATGCTGCTGTCCCTCGAAA
GTTACCCCTTCAAAGCAGCTGGCGATCAGTCGGCGGCGGGAATCACCGCG
GTAGTGCGATGCGTGATGGAGTCGGAAACTGTACGGTTTGTGGGCCTTGG
CCTTACGCTGATCGCGATAGTGACCTTGCTTTTCCATCTCGCTCGATCTA
TTTACAACGTAGCCCTGCAACATGCCAATGGGGGCCATGGGCGGCAAGTG
GGCATAATGAGTAAAGCATTCCAGAGAAAGTCCCGTCAAAACGGTAAAAA
GTGCTCAAGGCTAATTGGTTGTGGCATTTGCCATGTCCAGTAACTAACAA
TATACTAGTAACACACAGCAGTATTATAACTAACAGCAGTAACTAACAGC
AGTAACTAACAGCAGTAACTAACAGCGTCATGAAATTGATTTGATTTTGT
TGGTGAGGTTCCTCGGGTCTAGTTTATTTTGGTTTAGGGTTAGGGTCGGT
GGAGTTATATAGTTCCATTACAAGTTCTAAATTCTTTAAATTCTCAGTAT
CCACGAGAGGAAGGATTTTACTTTAGATTTTACGTTGCGACTCGTATGTG
TATTGATCCCAATATACTCTGGAACTGTAGCTAAAGCTCTGAACCGTCTT
AGCAGCACTGTCCAAATGGCACTATAATAGCAGTAGTATTATTAATAGTA
GTATCCGTAATACCGTCTTAATATTTTTATTAAAAAACCTTGAACTTCGT
ATTCCTGTAGAAACTGTACAGTACTTCCTTTTTTTCATGAATTTGCACCT
TGTTCTCTTTTTTGTTTTGTTTTTTACGTGTATTAATTTTGGGAGGCCGC
TTCGAGCACAAAGAGGGCTGATGTTCGTCCCACGCCCACTCGAATATCCA
CCCTTATGGATAGTGGAATTACATTCGTGTACATTCGTGTTTTGGCATCC
AGATGTCCGAATTCCATTCGTAGATGTAATTGTACTTTCAAGCATTTTCG
AAATGATTTGAATTGAAATTAATTAAATTCTCACATAAGGTGATGTCAAA
ATCCAGCCTGTGGTCACAAGGTAGAACAACACATCATCCGGAAACGAGAA
AAACGTTCAAGGTATTCTCCAATACAAAAGGAAACGACAATAATAATGGT
GCACAATACAAATACTCGGAAAAGCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig53519:16..2643-

>mRNA_H-elongata_contig53519.12699.1 ID=mRNA_H-elongata_contig53519.12699.1|Name=mRNA_H-elongata_contig53519.12699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at H-elongata_contig53519:16..2643- (Himanthalia elongata Himel1 dioecious)
ATGATGGCATCGTCAAAAGCAGAATCGCAACCAACGTGGCAAGCAGCATG
CAGCAATGACGACATCAGTCCGAAGCCTTTGGCGGTTACTTCCGGCGTGG
GGACGCCCATTCTGCCCTTGACGTTTGTACCCGCATTTGGTCCGCTCGGC
GGAAACCCCGCCGTTACCTCGGCGGCATTCTCCGCCTTGCCTAGCCTCGT
TGGTGAATTGACCTACGCCGCGGCTAGCGGGTGGAAACGGCCGAGGAGTG
CGGAAAACGAAACCTGTGGAGCGCATGATGGTGGCCAAACGCGACTTCTA
TCATCGTCCAGTATTCGAGGGAAAGGTCAAGCGACTGCCCCGAATAACCC
GGTGAATAAGAGAGCCAAGCGGCAGGAACGTCTCATGAAGAACAGAGAGG
CCGCCAATCGCTCCCGTATCAAGATGATGGCATCGTCAAAAGCAGAATCG
CAACCAACGTGGCAAGCAGCATGCAGCAATGACGACATCAGTCCGAAGCC
TTTGGCGGTTACTTCCGGCGTGGGGACGCCCATTCTGCCCTTGACGTTTG
TACCCGCATTTGGTCCGCTCGGCGGAAACCCCGCCGTTACCTCGGCGGCA
TTCTCCGCCTTGCCTAGCCTCGTTGGTGAATTGACCTACGCCGCGGCTAG
CGGGTGGAAACGGCCGAGGAGTGCGGAAAACGAAACCTGTGGAGCGCATG
ATGGTGGCCAAACGCGACTTCTATCATCGTCCAGTATTCGAGGGAAAGGT
CAAGCGACTGCCCCGAATAACCCGGTGAATAAGAGAGCCAAGCGGCAGGA
ACGTCTCATGAAGAACAGAGAGGCCGCCAATCGCTCCCGTATCAAGCGCA
AGGAAATCCAAAGTGAGCTGGAAAACCGCGTAGCGACACTTTCAAGCAGC
CTAACAGCATCTCGCGAGGAAAACGACACCCTGAAACAGGAGATGGCCGC
TCTGAGGGAAGACAACTCTTTCCTCAGGGGCATGCTCTCCGCTAGAGGCA
GCGCCAATGAACTGTCACATGTTCTGCCCACCTCGGCCATCCGGAAGCTG
AGTGGAAGTGACGGAGTCGCCGGAGTTGAGGTGGCCACAGGCATGAGTGC
GGTCGTCGGAGCTATCGGCACGGTACTGGCGGTCGTGAGCTACGCCGGAC
CCTCCGAAACGAACTCTGTCCAGGACGTGGACGACCAAACTCTCGGCAAT
TTGAGTGGCATTGAATCCAGGCAGGCAGGGGGCCGGAGAATGCTGCTGTC
CCTCGAAAGTTACCCCTTCAAAGCAGCTGGCGATCAGTCGGCGGCGGGAA
TCACCGCGGTAGTGCGATGCGTGATGGAGTCGGAAACTGTACGGTTTGTG
GGCCTTGGCCTTACGCTGATCGCGATAGTGACCTTGCTTTTCCATCTCGC
TCGATCTATTTACAACGTAGCCCTGCAACATGCCAATGGGGGCCATGGGC
GGCAAGTGGGCATAATGAGTAAAGCATTCCAGAGAAAGTCCCGTCAAAAC
GGTAAAAAGTGCTCAAGGCTAATTGGTTGTGGCATTTGCCATGTCCAGTA
ACGCAAGGAAATCCAAAGTGAGCTGGAAAACCGCGTAGCGACACTTTCAA
GCAGCCTAACAGCATCTCGCGAGGAAAACGACACCCTGAAACAGGAGATG
GCCGCTCTGAGGGAAGACAACTCTTTCCTCAGGGGCATGCTCTCCGCTAG
AGGCAGCGCCAATGAACTGTCACATGTTCTGCCCACCTCGGCCATCCGGA
AGCTGAGTGGAAGTGACGGAGTCGCCGGAGTTGAGGTGGCCACAGGCATG
AGTGCGGTCGTCGGAGCTATCGGCACGGTACTGGCGGTCGTGAGCTACGC
CGGACCCTCCGAAACGAACTCTGTCCAGGACGTGGACGACCAAACTCTCG
GCAATTTGAGTGGCATTGAATCCAGGCAGGCAGGGGGCCGGAGAATGCTG
CTGTCCCTCGAAAGTTACCCCTTCAAAGCAGCTGGCGATCAGTCGGCGGC
GGGAATCACCGCGGTAGTGCGATGCGTGATGGAGTCGGAAACTGTACGGT
TTGTGGGCCTTGGCCTTACGCTGATCGCGATAGTGACCTTGCTTTTCCAT
CTCGCTCGATCTATTTACAACGTAGCCCTGCAACATGCCAATGGGGGCCA
TGGGCGGCAAGTGGGCATAATGAGTAAAGCATTCCAGAGAAAGTCCCGTC
AAAACGGTAAAAAGTGCTCAAGGCTAATTGGTTGTGGCATTTGCCATGTC
CAGTAA
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