mRNA_H-elongata_contig53517.12697.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53517.12697.1
Unique NamemRNA_H-elongata_contig53517.12697.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 9.740e-64
Identity = 115/178 (64.61%), Postives = 121/178 (67.98%), Query Frame = 1
Query:   13 RIAEYDRMFDRYELVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVS--YV-----------------------------------------------------SLDLRPSSEFTMYAHTDLGGYLPASVINKLCKKPAYRVLRQV 381
            RI EYDRMFDRYELVERPNDHTSVRWTCY+AIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMV+  YV                                                     S++LRPSSEFTMYAHTDLGG LPASVINKLCKKPAYRVLR++
Sbjct:  467 RIMEYDRMFDRYELVERPNDHTSVRWTCYQAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVTCGYVICPLGESRRQRRASKSIKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGSRSMELRPSSEFTMYAHTDLGGVLPASVINKLCKKPAYRVLRKI 644          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: D7FSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ0_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 1.410e-63
Identity = 114/178 (64.04%), Postives = 121/178 (67.98%), Query Frame = 1
Query:   13 RIAEYDRMFDRYELVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVS--YV-----------------------------------------------------SLDLRPSSEFTMYAHTDLGGYLPASVINKLCKKPAYRVLRQV 381
            RI EYDRMFDRYE+VERPNDHTSVRWTCY+AIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMV+  YV                                                     S++LRPSSEFTMYAHTDLGG LPASVINKLCKKPAYRVLR++
Sbjct:  137 RIMEYDRMFDRYEMVERPNDHTSVRWTCYQAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVTCGYVICPLGESRRQRRASKSIKPSTPXXXXXXXXXXXXXXXXXXXXXXXXXXGAGSRSMELRPSSEFTMYAHTDLGGVLPASVINKLCKKPAYRVLRKI 314          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: A0A067C6Z9_SAPPC (START domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C6Z9_SAPPC)

HSP 1 Score: 88.2 bits (217), Expect = 5.450e-19
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    1 SNAARIAEYDRMFDRYELVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGK--MVSYVSLDLRPSS-EFTMYAHTDLGGYLPASVINKLCKKPAYRVLRQV 381
            S+A+++  +D M D   ++E   + TS+R+   + ++PT  RDF++ ++ +   DG+IVI T+SVEH+  P    FVR    +  Y+   L P+S   T+  H DLGGY+PA+VIN L      ++++++
Sbjct:   89 SDASQMHIFDEMTDNCRVIEALKESTSIRYVQAKPVFPTTARDFLVVTSQQHLDDGSIVIGTKSVEHDSVPVDKHFVRAHTHVSGYIVRPLTPTSCSVTLIVHMDLGGYMPAAVINLLSVSSPIKLMKRL 218          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: A0A418AMN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AMN5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.280e-18
Identity = 51/116 (43.97%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   52 LVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKM------VSYVSLDLRPSSEFTMYAHTDLGGYLPASVINKLCKKPAYRVLRQV 381
            L+  PN  TSVR    + ++PT  RDFV+ ST E   D  +VIATRS++H   P T TFVRG +      +  V L   P+   TM AH DLGG LPA VIN L  +   ++L +V
Sbjct:   19 LMTLPNSTTSVRHITAKPVFPTAARDFVVMSTMEVKPDDVVVIATRSMDHATAPATSTFVRGHINISGYILDPVDLGPEPACHVTMMAHMDLGGMLPAVVINLLSVEAPAKLLNKV 134          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: A0A024TBS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBS2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.140e-17
Identity = 50/116 (43.10%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   52 LVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKM------VSYVSLDLRPSSEFTMYAHTDLGGYLPASVINKLCKKPAYRVLRQV 381
            L+  PN  TSVR    + ++PT  RDFV+ ST E   D  +VIATRS++H   P T  FVRG +      +  V L   P+   TM AH DLGG LPA VIN L  +   ++L +V
Sbjct:  366 LMALPNSTTSVRHITAKPVFPTAARDFVVMSTMEVKPDDVVVIATRSMDHATAPATSNFVRGHINISGYILDPVDLGPEPACHVTMMAHMDLGGMLPAVVINLLSVEAPAKLLNKV 481          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: A0A7S2V6S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6S8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.430e-17
Identity = 47/122 (38.52%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   13 RIAEYDRMFDRYELVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFA---DGTIVIATRSVEHEDYPETPTFVRGKMVSYVSLDL--------RPSSEFTMYAHTDLGGYLPASVINKL 345
            R++EYD +FD+ + V++P+ H+ VR   Y+AIWPT PRDF+  +TW+      +G  VIA++SV+    P +    RG + S+    +         P +   M AH DLGG +PAS+IN L
Sbjct:   81 RVSEYDSLFDKIQDVDKPDGHSVVRHLKYKAIWPTSPRDFITYTTWKRVGAKREGW-VIASKSVDLTKGPSSRKHTRGNVYSFGYSLMPTTMPDTGEPGTVLRMTAHMDLGGSMPASIINFL 201          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: A0A6G0WE54_9STRA (START domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE54_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.470e-17
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 SNAARIAEYDRMFDRYELVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMV--SYVSLDLRPSS----EFTMYAHTDLGGYLPASVINKL 345
            ++A+ I +++ M +   ++   +  TS+R    +A++PT  RDFV+  T E  +D  IVIATRS+ H+D PE P FVR  M+   YV   +RP+     + TM AH DLGG+ PA VIN L
Sbjct:   81 NDASAITKFEEMTEYCHVIANVDVATSIRHVKAKAVFPTTARDFVV-VTSESRSDKAIVIATRSILHDDMPEDPHFVRATMLISGYV---IRPTGKHQCQVTMVAHVDLGGHFPAFVINLL 197          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: T0RYD8_SAPDV (START domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RYD8_SAPDV)

HSP 1 Score: 79.0 bits (193), Expect = 2.760e-16
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   25 YDRMFDRYELVE--RPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGK--MVSYVSLDLRPSS-EFTMYAHTDLGGYLPASVINKLCKKPAYRVLRQ 378
            +D M D   ++E   P +  ++R+   + ++PT  RDF++ ++ +   DG+IVI T+SVEH+  P    FVR    +  Y+   L P+S   T+  H DLGGY+PA VIN L      ++L++
Sbjct:    4 FDEMTDNCRIIEALNPAETKTIRYVQAKPVFPTTARDFLVVTSEQRLDDGSIVIGTKSVEHDSVPVDKHFVRAHTHVSGYIVRPLTPTSCSVTLIVHMDLGGYMPAYVINLLSVASPIQLLKR 126          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: A0A1V9YKF4_9STRA (START domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKF4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.890e-16
Identity = 48/132 (36.36%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 SNAARIAEYDRMFDRYELVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGKMVSYVS-LDLRPSS----EFTMYAHTDLGGYLPASVINKLCKKPAYRVLRQV 381
            ++A+++  +D M D   +VE  N   S+R+   + ++PT  RDF++  T E+    TIVI T+S++H+D PE  +FVR    ++VS   LRP S    + T+  H DLGGY+PA+VIN L      ++++++
Sbjct:   77 ADASQMHIFDEMTDNCRVVEVLNPTASIRYVQAKPVFPTTARDFLV-VTAEQRVGDTIVIGTKSIKHDDVPEDGSFVRAH--THVSGYLLRPVSSTECQVTLIVHMDLGGYMPAAVINLLSVSSPIKLMKRL 205          
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Match: A0A067CAV6_SAPPC (START domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAV6_SAPPC)

HSP 1 Score: 80.1 bits (196), Expect = 5.880e-16
Identity = 43/123 (34.96%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   25 YDRMFDRYELVE--RPNDHTSVRWTCYRAIWPTRPRDFVIRSTWEEFADGTIVIATRSVEHEDYPETPTFVRGK--MVSYVSLDLRPSS-EFTMYAHTDLGGYLPASVINKLCKKPAYRVLRQ 378
            +D M D   ++E   P +  ++R+   + ++PT  RDF++ ++ +   DG+IVI T+SVEH+  P +  FVR    +  Y+   L P+S   T+  H DLGGY+PA VIN L      ++L++
Sbjct:   86 FDEMTDNCRIIEALNPAETKTIRYVQAKPVFPTTARDFLVVTSEQRLEDGSIVIGTKSVEHDSVPVSKHFVRAHTHVSGYIIRPLTPTSCSVTLIVHMDLGGYMPAYVINLLSVASPIQLLKR 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53517.12697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K079_9PHAE9.740e-6464.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ0_ECTSI1.410e-6364.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067C6Z9_SAPPC5.450e-1934.62START domain-containing protein n=2 Tax=Saprolegni... [more]
A0A418AMN5_9STRA2.280e-1843.97Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TBS2_9STRA1.140e-1743.10Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2V6S8_9STRA1.430e-1738.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0WE54_9STRA6.470e-1741.32START domain-containing protein n=1 Tax=Aphanomyce... [more]
T0RYD8_SAPDV2.760e-1634.96START domain-containing protein n=2 Tax=Saprolegni... [more]
A0A1V9YKF4_9STRA3.890e-1636.36START domain-containing protein n=1 Tax=Achlya hyp... [more]
A0A067CAV6_SAPPC5.880e-1634.96START domain-containing protein n=2 Tax=Saprolegni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53517contigH-elongata_contig53517:378..1413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.8
Seed ortholog evalue1.5e-54
Seed eggNOG ortholog2880.D7FSJ0
KEGG koko:K10779
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.2262013-CDS-H-elongata_contig53517:377..6311622930872.2262013-CDS-H-elongata_contig53517:377..631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53517 378..631 +
1691679606.2014923-CDS-H-elongata_contig53517:377..6311691679606.2014923-CDS-H-elongata_contig53517:377..631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53517 378..631 +
1622930872.2491791-CDS-H-elongata_contig53517:1286..14131622930872.2491791-CDS-H-elongata_contig53517:1286..1413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53517 1287..1413 +
1691679606.2154365-CDS-H-elongata_contig53517:1286..14131691679606.2154365-CDS-H-elongata_contig53517:1286..1413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53517 1287..1413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53517.12697.1prot_H-elongata_contig53517.12697.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53517 378..1413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53517.12697.1

>prot_H-elongata_contig53517.12697.1 ID=prot_H-elongata_contig53517.12697.1|Name=mRNA_H-elongata_contig53517.12697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
SNAARIAEYDRMFDRYELVERPNDHTSVRWTCYRAIWPTRPRDFVIRSTW
EEFADGTIVIATRSVEHEDYPETPTFVRGKMVSYVSLDLRPSSEFTMYAH
TDLGGYLPASVINKLCKKPAYRVLRQV
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mRNA from alignment at H-elongata_contig53517:378..1413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53517.12697.1 ID=mRNA_H-elongata_contig53517.12697.1|Name=mRNA_H-elongata_contig53517.12697.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-elongata_contig53517:378..1413+ (Himanthalia elongata Himel1 dioecious)
TCGAATGCTGCCAGGATCGCCGAGTACGATAGGATGTTCGACAGGTACGA GCTCGTGGAGAGGCCGAATGATCACACCTCCGTTCGCTGGACTTGCTACC GAGCCATTTGGCCGACGCGACCCAGGGACTTCGTGATCCGCAGCACGTGG GAGGAATTCGCGGATGGCACGATCGTCATCGCGACTCGGTCGGTCGAGCA CGAGGACTACCCGGAAACTCCGACTTTCGTCAGAGGGAAAATGGTTAGCT ATGTGTGTCGGGGGGGGGGGGACTCTTTACCCCATTGCTTGGATTTGGGT ACGCGATACTATCCGATTGGAAAATTCTTGGCGTACAACCGGCACTATTC GCGTGTTTGATAAGAGGGTCTTGTTGCTTTGAAACCCCTCGCGATTCACT CGAAGACTCCATTCTCGTGGTGGACCTGTCAGGTGTCAAGTGTCCTTTCC GCCGTATGAAGGAATGTCATTAAAACGGCGATCTAACGGCAGTATCAATG ACAAACGAAGCCTTACGAAGTTGCTCTCTCTCTCTCTCTGTCATAGTCTC TCCTCTCTTTCTCTCTCTCTCTCTCTCTGTCATAGTCTCTCCCTCTCTCT TTCTCTCTCTCTCTCTGTCCGATAGTTATTAGTAAATGTACCCGGTCCAG TATTTACTCTCAGTTGGTTCCTACAAGCAGCACACTTATCAACACTGACC TTTCCCCTCCTATATACTATACTATACTATACTATACTACTACCATGATC GAACGGGGTACTATAGGTGACCTGCGGATACGTCATCTGCCCCCTGGGGG AAAGCAGTCGACGTCGGCGCAGCAGCTACGCCAGACCGGCGCCGTCCGCC GCAAGCGCAATGGAGGGTGCAGCGGGGGCGTCGAGCCCCGATGCGGCGAC TATCAGAAGGTCTTTGGATCTCAGGCCGAGCAGCGAGTTCACGATGTACG CCCACACGGACCTCGGTGGCTACTTACCTGCGAGCGTAATCAACAAGCTG TGCAAGAAGCCAGCTTATCGGGTGCTGCGGCAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig53517:378..1413+

>mRNA_H-elongata_contig53517.12697.1 ID=mRNA_H-elongata_contig53517.12697.1|Name=mRNA_H-elongata_contig53517.12697.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig53517:378..1413+ (Himanthalia elongata Himel1 dioecious)
TCGAATGCTGCCAGGATCGCCGAGTACGATAGGATGTTCGACAGGTACGA
GCTCGTGGAGAGGCCGAATGATCACACCTCCGTTCGCTGGACTTGCTACC
GAGCCATTTGGCCGACGCGACCCAGGGACTTCGTGATCCGCAGCACGTGG
GAGGAATTCGCGGATGGCACGATCGTCATCGCGACTCGGTCGGTCGAGCA
CGAGGACTACCCGGAAACTCCGACTTTCGTCAGAGGGAAAATGGTTAGCT
ATGTTCGAATGCTGCCAGGATCGCCGAGTACGATAGGATGTTCGACAGGT
ACGAGCTCGTGGAGAGGCCGAATGATCACACCTCCGTTCGCTGGACTTGC
TACCGAGCCATTTGGCCGACGCGACCCAGGGACTTCGTGATCCGCAGCAC
GTGGGAGGAATTCGCGGATGGCACGATCGTCATCGCGACTCGGTCGGTCG
AGCACGAGGACTACCCGGAAACTCCGACTTTCGTCAGAGGGAAAATGGTT
AGCTATGTGTCTTTGGATCTCAGGCCGAGCAGCGAGTTCACGATGTACGC
CCACACGGACCTCGGTGGCTACTTACCTGCGAGCGTAATCAACAAGCTGT
GCAAGAAGCCAGCTTATCGGGTGCTGCGGCAGGTTGTCTTTGGATCTCAG
GCCGAGCAGCGAGTTCACGATGTACGCCCACACGGACCTCGGTGGCTACT
TACCTGCGAGCGTAATCAACAAGCTGTGCAAGAAGCCAGCTTATCGGGTG
CTGCGGCAGGTT
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