mRNA_H-elongata_contig53507.12696.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53507.12696.1
Unique NamemRNA_H-elongata_contig53507.12696.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53507.12696.1 vs. uniprot
Match: D8LS06_ECTSI (Calponin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS06_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.620e-24
Identity = 60/120 (50.00%), Postives = 74/120 (61.67%), Query Frame = 3 
Query:    3 NVTWPSSFQRGLNITVGMVSDLRPPATLSARARKMCPEEVVKSPRALAYDTDPLGHPTRSPTFRTPEASNSIGSG--VFFHSAWDTEIYSIRNAKTRFSRPLSPGSRIKTLSPQGLWAAG 356
            +V  P S +RG   TVG ++DL PPATLSARAR+MCP E+V SPRAL ++ DP+GHPTRSPT R    SN+   G      SAW T+ Y  + A    S   +  SR  TLSP G+W  G
Sbjct:  324 DVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPTRSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRAAKATSNLSATSSRGMTLSPAGIWGTG 443
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BLAST of mRNA_H-elongata_contig53507.12696.1 vs. uniprot
Match: A0A6H5JBJ6_9PHAE (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.510e-23
Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = 3 
Query:    3 NVTWPSSFQRGLNITVGMVSDLRPPATLSARARKMCPEEVVKSPRALAYDTDPLGHPTRSPTFRTPEASNSIGSG--VFFHSAWDTEIYSIRNAKTRFSRPLSPGSRIKTLSPQGLWAAG 356
            +V  P S +RG   TVG ++DL PPATLSARAR+MCP E+V SPRAL ++ DP+GHP RSPT R    SN+   G      SAW T+ Y  +      S   +  SR  TLSP G+W  G
Sbjct:  322 DVERPRSTRRGFTTTVGSITDLDPPATLSARARQMCPTEMVNSPRALVFNADPVGHPPRSPTLRAAWESNATNGGRAAAGRSAWGTDAYPAKRTAKITSNLSATSSRGMTLSPAGIWGTG 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53507.12696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS06_ECTSI1.620e-2450.00Calponin domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBJ6_9PHAE6.510e-2348.33Calponin-homology (CH) domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53507contigH-elongata_contig53507:440..2786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D8LS06
KEGG koko:K06084,ko:K15411,ko:K20526
KEGG Pathwayko04520,ko05168,map04520,map05168
EggNOG free text desc.actin binding
EggNOG OGsCOG5199@1,KOG2046@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCalponin homology domain
Ec32 orthologEc-08_001650.1
Exons3
Model size1603
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53507.12696.1prot_H-elongata_contig53507.12696.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53507 493..1692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.0494654-UTR-H-elongata_contig53507:439..4921622930872.0494654-UTR-H-elongata_contig53507:439..492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53507 440..492 +
1691679606.140155-UTR-H-elongata_contig53507:439..4921691679606.140155-UTR-H-elongata_contig53507:439..492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53507 440..492 +
1622930872.1307263-UTR-H-elongata_contig53507:1692..27861622930872.1307263-UTR-H-elongata_contig53507:1692..2786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53507 1693..2786 +
1691679606.191286-UTR-H-elongata_contig53507:1692..27861691679606.191286-UTR-H-elongata_contig53507:1692..2786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53507 1693..2786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.0697508-CDS-H-elongata_contig53507:492..5581622930872.0697508-CDS-H-elongata_contig53507:492..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53507 493..558 +
1691679606.154324-CDS-H-elongata_contig53507:492..5581691679606.154324-CDS-H-elongata_contig53507:492..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53507 493..558 +
1622930872.0911992-CDS-H-elongata_contig53507:969..11311622930872.0911992-CDS-H-elongata_contig53507:969..1131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53507 970..1131 +
1691679606.164715-CDS-H-elongata_contig53507:969..11311691679606.164715-CDS-H-elongata_contig53507:969..1131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53507 970..1131 +
1622930872.1098897-CDS-H-elongata_contig53507:1464..16921622930872.1098897-CDS-H-elongata_contig53507:1464..1692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53507 1465..1692 +
1691679606.1809416-CDS-H-elongata_contig53507:1464..16921691679606.1809416-CDS-H-elongata_contig53507:1464..1692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53507 1465..1692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53507.12696.1

>prot_H-elongata_contig53507.12696.1 ID=prot_H-elongata_contig53507.12696.1|Name=mRNA_H-elongata_contig53507.12696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MVSDLRPPATLSARARKMCPEEVVKSPRALAYDTDPLGHPTRSPTFRTPE
ASNSIGSGVFFHSAWDTEIYSIRNAKTRFSRPLSPGSRIKTLSPQGLWAA
GNAKYTAKSAYLTDAYAHGHSPAEDGEGMTTDVAAARAGYILPEAHGEHR
S*
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mRNA from alignment at H-elongata_contig53507:440..2786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53507.12696.1 ID=mRNA_H-elongata_contig53507.12696.1|Name=mRNA_H-elongata_contig53507.12696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2347bp|location=Sequence derived from alignment at H-elongata_contig53507:440..2786+ (Himanthalia elongata Himel1 dioecious)
AGAATGTGACGTGGCCAAGCTCATTCCAGCGGGGGCTAAACATTACAGTG
GGAATGGTGTCAGACTTACGCCCCCCTGCCACGCTATCCGCTCGCGCTCG
CAAGATGTGCCCCGAGGAGGTGCGGCACATATTCTGTCTTGAGATTAGCG
AGTCATGAAAATGATACATCAATAGATGTGCTTTAAACGCGAACCGGGTG
CCCCGAACGAACGCCACGCGCTATTATACTATTACGCAGTCGGGTTCGCT
GCTCCCGATGTGCCACGGTCGATTTACGTGCTTAGCATGGCATCACCATC
ACCATCACCACTGCCACTCGTTACAAGACACGAGCTTGAAGACGAATGTT
TGTATCTTGTGGGCCTTGACGATACCGTCCGTATCCCGACTCCAAAGGAC
GATAAGCACCTGACACGTGGTTCCCGTTCCTCGTCGTGATCACATGCCAA
AATACGATTGGACCCCCCCCCCCCAGACTCTACCCGCCCTGCGCCAAAAT
TATCCGTGGACGTTTTTTGGGGTGTTACAGGTCGTCAAGTCACCTCGCGC
CTTAGCTTACGACACGGATCCTCTCGGTCATCCTACGCGATCTCCAACGT
TCCGCACGCCTGAGGCATCCAACTCAATCGGGAGCGGCGTCTTCTTCCAC
AGCGCGTGGGATACCGAGATATACTCCATACGAAATGCGAAGGTTTGTTG
TCCCGAGACGTGATGTGGGTATGACGTATCGAGGAGAAGAATTATTTCGA
CAGCGATTATGTTGTTGCTTGATACTACTATACAATTTTTATTCTATTTT
TATCCCATATCTTGAGTATATTGCCAAGTAATTTGCCCTACTATTAATAT
TATAGTCTATCGTGGTACAGTATAATCTTGACGGTATAGTATGCTTTTTG
TGATCGAGCCCATCCCCTATTTTCGCGCTATGAATAGCTATGAGAAACAA
TCGGCCCATTGCCCATGGCCGTGCAGCATTATTCCTCATCTACCACCCCT
ATTTCACGTATCTCCCCCGACCCAGACTCGTTTTTCCAGACCGTTGTCAC
CCGGCTCCCGCATCAAAACTCTCTCCCCACAAGGACTGTGGGCTGCGGGA
AACGCCAAATACACCGCCAAGAGCGCATACCTCACCGACGCTTATGCCCA
CGGCCATTCTCCCGCTGAAGACGGAGAGGGAATGACCACTGATGTTGCTG
CTGCACGGGCTGGGTATATCTTACCGGAGGCCCATGGCGAGCATCGATCA
TAACTCGTCGGTGAAGAAAGGGGTATTAGTAGTAGGCGAAAGGGAGCAAT
CGAAGGTGTTGAGAAGAGCGAGATTCAGTAGATGCTGCATTGGGTGCGCC
GCCAGCCAACGCCTTCGACATAGACAGCCCTTTCGCCTTCTGGCGATTGG
AAGAAACAACTAATATTATAACCACCGTGTGTGATCCTGTTTTGAACGGG
CAACATGTTTCTGTAATATTGTGCGTTTAGTTACGATAATATCTATCCGT
TTTTTGAAAGTGCTTAACTCTACGTAGTACGTACGTACATGATCTATCAC
CTAAAACTCTTCTTGTTGTATTAGAAGACTAGACTATATTATTGTCCATC
ATGTTGTCCTGCAATGTTATTATTTATTATATAGTATAGTATACCCAACC
ACCGTGGATGAATCAATAGGGTTCAGCACAACATTTGGTAAAATACAAGA
CGCCGAGCACATAAAATGGCACTGTTTTACAAACAACGGAGAGGATTATT
CTATGTTGTTTCACGTTTCGGAGATAATAAATTGCAAGAAACTTTCGGTG
CTAAGATGGCGTGGTGGATGTTCGGACGGTTGGTATAAGTTCATATATTT
AAAAAAGAAAGATTAGCATCTTTTGGGGCAAGACGGGTGGGTTTGTTTTC
TGATTTTCGTTTTCTGCCGCTTGTTTTTCGAGAAGAAAGGGCCGGTCTGG
TTGGTTTGTTTTCGAGCCTGTCATCTTGTTGTATGTGCTGAAGGTGATCC
CATCTCAAATTATCGTCGACTTGAGATGATTATTCCTGCTAAAAGTAACG
AATGGATGAGGAAGGGTTCGGAATCTGGCGTCGATATTTGCCCCGTGTCA
GCTATGTCTTGAATTACTTGCGACGCGCTTACCGACGGCATCCTAGGGGA
TACAAATATTATGTGCTTGTACTATTTATTATAATAGATTCAGCAGTAGT
ACTGTTCATGCTATTATGATACGAATATTTGTTCTTCCTTTCCAACAAAA
AGTTGTGTCCGATAGGCTCTATGCTGTACTGTACTGTGTATTGTAAGAAC
ATTTTGGGGATGGATATGATGAATAGAAATATTACAGTAGTACTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig53507:440..2786+

>mRNA_H-elongata_contig53507.12696.1 ID=mRNA_H-elongata_contig53507.12696.1|Name=mRNA_H-elongata_contig53507.12696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig53507:440..2786+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTCAGACTTACGCCCCCCTGCCACGCTATCCGCTCGCGCTCGCAA
GATGTGCCCCGAGGAGATGGTGTCAGACTTACGCCCCCCTGCCACGCTAT
CCGCTCGCGCTCGCAAGATGTGCCCCGAGGAGGTCGTCAAGTCACCTCGC
GCCTTAGCTTACGACACGGATCCTCTCGGTCATCCTACGCGATCTCCAAC
GTTCCGCACGCCTGAGGCATCCAACTCAATCGGGAGCGGCGTCTTCTTCC
ACAGCGCGTGGGATACCGAGATATACTCCATACGAAATGCGAAGGTCGTC
AAGTCACCTCGCGCCTTAGCTTACGACACGGATCCTCTCGGTCATCCTAC
GCGATCTCCAACGTTCCGCACGCCTGAGGCATCCAACTCAATCGGGAGCG
GCGTCTTCTTCCACAGCGCGTGGGATACCGAGATATACTCCATACGAAAT
GCGAAGACTCGTTTTTCCAGACCGTTGTCACCCGGCTCCCGCATCAAAAC
TCTCTCCCCACAAGGACTGTGGGCTGCGGGAAACGCCAAATACACCGCCA
AGAGCGCATACCTCACCGACGCTTATGCCCACGGCCATTCTCCCGCTGAA
GACGGAGAGGGAATGACCACTGATGTTGCTGCTGCACGGGCTGGGTATAT
CTTACCGGAGGCCCATGGCGAGCATCGATCATAAACTCGTTTTTCCAGAC
CGTTGTCACCCGGCTCCCGCATCAAAACTCTCTCCCCACAAGGACTGTGG
GCTGCGGGAAACGCCAAATACACCGCCAAGAGCGCATACCTCACCGACGC
TTATGCCCACGGCCATTCTCCCGCTGAAGACGGAGAGGGAATGACCACTG
ATGTTGCTGCTGCACGGGCTGGGTATATCTTACCGGAGGCCCATGGCGAG
CATCGATCATAA
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