mRNA_H-elongata_contig5349.12694.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5349.12694.1
Unique NamemRNA_H-elongata_contig5349.12694.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5349.12694.1 vs. uniprot
Match: A0A6H5L374_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L374_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 1.260e-78
Identity = 125/190 (65.79%), Postives = 150/190 (78.95%), Query Frame = 2 
Query:  131 VERAAGLQGGLEDLVAAMPIKTMKRRLEELGANPRRLTTCLEKGECVSLVMGSMLLSREGLVREGGQLPPWVSLLRGWRWSYYYAKADARRCWLSMDDLVRFPWTMSFPADIPT--PASPLL-VTCKFHRNFCYTDEGFYQNGLDWHFEDSHRCVKVSSYPALEAERDP-SWGWRLVNAHVIFEQQRRPP 688
            +E A  L GGLE+LVAAMPIK MKRRL ELGANP RL  CLEK ECVSL+MGSMLLSR+GL+R+ GQLP W+S +RGWRWS+++A  DA+R W++M+DL R PW MSFP  + +  P  PLL V C+FHR+F YTD GF+Q+GL WHFED+H  VKVS+YPALE ERD  SWGWRL+NAHV F+Q R  P
Sbjct:  224 IELARSLSGGLEELVAAMPIKVMKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMMSFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHHFVKVSNYPALEVERDEKSWGWRLINAHVTFQQDRALP 413
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BLAST of mRNA_H-elongata_contig5349.12694.1 vs. uniprot
Match: D8LLT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT4_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 4.730e-25
Identity = 76/172 (44.19%), Postives = 88/172 (51.16%), Query Frame = 2 
Query:  182 MPIKTMKRRLEELGANPRRLTTCLEKGECVSL--VMGSMLLSREGLVREGGQLPPWVSLLRGWRWSYYYAKADARRCWLSMDDLVRFPWTMSFPADIPTPASPLLVTCKFHRNFCYTDEGFYQNGLDWHFEDSHRCVKVSSYPALEAERDP-SWGWRLVNAHVIFEQQRRPP 688
            MPIK MKRRL ELGANP RL  CLEKG  +        + L+ EGL  E   LP    LL+G +     A  D                      D   P    L             +GF+Q+GL WHFED+HR VKVS+YPALE ERD  SWGWRLVNAHV F+Q+R  P
Sbjct:    1 MPIKVMKRRLHELGANPARLAACLEKGRPLEAEGTAAGVALAGEGLAVE---LP---LLLQGRQ-----AAVD----------------------DHGGPGKNAL-------------DGFHQDGLVWHFEDNHRFVKVSNYPALEVERDEKSWGWRLVNAHVTFKQERAVP 126
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BLAST of mRNA_H-elongata_contig5349.12694.1 vs. uniprot
Match: A0A7S4I1I9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I1I9_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 2.620e-5
Identity = 35/127 (27.56%), Postives = 51/127 (40.16%), Query Frame = 2 
Query:  362 WRWSYYYAKADARRCWLSMDDLVRFPWTMSFPADIP----TPASPLLVTCKFHRNFCYTDEGFYQNG----------LDWHFEDSH----RCVKVSSYPALEAERDPSWGWRLVNAHVIFEQQRRPP 688
            W+  + +   DA RC L+  +L    W   F  D+     T A       +      +  +GFY +           L W    +       V++ SYP L+ ER P WGWR+ N  V F  + RPP
Sbjct:   32 WKQEFAFRLTDAARCRLTTAELTCAEWRFRFRHDLQAMHLTDAEREQYRERAPATLHFDPDGFYSSTIPGAPSALRPLRWRLMAASGGDSALVQIGSYPLLQVERTPDWGWRMRNQFVEFYTEARPP 158
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BLAST of mRNA_H-elongata_contig5349.12694.1 vs. uniprot
Match: A0A7S4MCY5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MCY5_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 8.100e-5
Identity = 35/127 (27.56%), Postives = 51/127 (40.16%), Query Frame = 2 
Query:  362 WRWSYYYAKADARRCWLSMDDLVRFPWTMSFPADIP----TPASPLLVTCKFHRNFCYTDEGFYQNG----------LDWHFEDSH----RCVKVSSYPALEAERDPSWGWRLVNAHVIFEQQRRPP 688
            W+  + +   DA RC L+  +L    W   F  D+     T A       +      +  +GFY +           L W    +       V++ SYP L+ ER P WGWR+ N  V F  + RPP
Sbjct:  106 WKQEFAFRLTDAARCRLTTAELTCAEWRFRFRHDLQAMHLTDAEREQYRERAPATLHFDPDGFYSSTIPGAPSALRPLRWRLMAASGGDSALVQIGSYPLLQVERTPDWGWRMRNQFVEFYTEARPP 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5349.12694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L374_9PHAE1.260e-7865.79F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LLT4_ECTSI4.730e-2544.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4I1I9_9EUKA2.620e-527.56Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S4MCY5_9EUKA8.100e-527.56Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5349contigH-elongata_contig5349:1017..4459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2047
Cds size510
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.7608726-UTR-H-elongata_contig5349:1016..23721622930871.7608726-UTR-H-elongata_contig5349:1016..2372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5349 1017..2372 -
1691679606.0071504-UTR-H-elongata_contig5349:1016..23721691679606.0071504-UTR-H-elongata_contig5349:1016..2372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5349 1017..2372 -
1622930871.8586195-UTR-H-elongata_contig5349:3847..39361622930871.8586195-UTR-H-elongata_contig5349:3847..3936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5349 3848..3936 -
1691679606.0599055-UTR-H-elongata_contig5349:3847..39361691679606.0599055-UTR-H-elongata_contig5349:3847..3936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5349 3848..3936 -
1622930871.8748507-UTR-H-elongata_contig5349:4367..44591622930871.8748507-UTR-H-elongata_contig5349:4367..4459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5349 4368..4459 -
1691679606.0674906-UTR-H-elongata_contig5349:4367..44591691679606.0674906-UTR-H-elongata_contig5349:4367..4459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5349 4368..4459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.7775106-CDS-H-elongata_contig5349:2372..24741622930871.7775106-CDS-H-elongata_contig5349:2372..2474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5349 2373..2474 -
1691679606.0194523-CDS-H-elongata_contig5349:2372..24741691679606.0194523-CDS-H-elongata_contig5349:2372..2474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5349 2373..2474 -
1622930871.8014421-CDS-H-elongata_contig5349:2764..29081622930871.8014421-CDS-H-elongata_contig5349:2764..2908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5349 2765..2908 -
1691679606.0295975-CDS-H-elongata_contig5349:2764..29081691679606.0295975-CDS-H-elongata_contig5349:2764..2908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5349 2765..2908 -
1622930871.8178582-CDS-H-elongata_contig5349:3190..33761622930871.8178582-CDS-H-elongata_contig5349:3190..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5349 3191..3376 -
1691679606.039312-CDS-H-elongata_contig5349:3190..33761691679606.039312-CDS-H-elongata_contig5349:3190..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5349 3191..3376 -
1622930871.8382916-CDS-H-elongata_contig5349:3769..38471622930871.8382916-CDS-H-elongata_contig5349:3769..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5349 3770..3847 -
1691679606.0493088-CDS-H-elongata_contig5349:3769..38471691679606.0493088-CDS-H-elongata_contig5349:3769..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5349 3770..3847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5349.12694.1prot_H-elongata_contig5349.12694.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5349 2373..3847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5349.12694.1

>prot_H-elongata_contig5349.12694.1 ID=prot_H-elongata_contig5349.12694.1|Name=mRNA_H-elongata_contig5349.12694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MPIKTMKRRLEELGANPRRLTTCLEKGECVSLVMGSMLLSREGLVREGGQ
LPPWVSLLRGWRWSYYYAKADARRCWLSMDDLVRFPWTMSFPADIPTPAS
PLLVTCKFHRNFCYTDEGFYQNGLDWHFEDSHRCVKVSSYPALEAERDPS
WGWRLVNAHVIFEQQRRPP*
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mRNA from alignment at H-elongata_contig5349:1017..4459-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5349.12694.1 ID=mRNA_H-elongata_contig5349.12694.1|Name=mRNA_H-elongata_contig5349.12694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3443bp|location=Sequence derived from alignment at H-elongata_contig5349:1017..4459- (Himanthalia elongata Himel1 dioecious)
AGCCCTTCTGGAAGGACTGGTGGAGCACGAGTCTTGCGCGGCGCAGAGAG
AAGATAGGACGGCGGACTCCCCAGCGGTCGATGCAGGAGATGGTAAGCGA
GTTCTCAATGGGGTTCTAAAGAAGTTTTCCGAGGGAGGGGTGGAAGAGGG
GAGGAAGGGTGAAAAGGGAAATAATACATGGGTTTAAGATGGTGGAGAGG
AAGCGAGAGGCACGAACGAAATGGCGTGATTATTTTTTTCCCCCCCCCCC
CCCTCTTAAGCAGTTATTGGATCGAGGCCCCTTGAACGAGTAGAGATTCT
CGCCCGGTTGCTGATCTGGCTAGGAGGTGGAGAGGTGGAGTGATTCAGGT
GCTGGAAACAATATTTTGCTTCATTGGAGCGTGTTCCGTTGCCTGCCTTG
TTTAGTACCGCTATAAGTGTAATTGTTTTGTTTCTAATCTGGTTTGTCTT
TTTTTTTTGTAAATGTTTGCGGCTCTTGCGCCATCTCCCTGTTTTTTTTT
TTTTTTTTTTTTTTTCTTCCAAGGGTTGGCAAAAAGAAGAAGCCAGCAGC
ATCAGGGACTGGTGGAGCGCGCTGCTGGGCTGCAAGGAGGTCTGGAGGAT
CTTGTGGCGGCAATGCCAATCAAGACTATGAAGCGTCGCTTGGAGGAACT
CGGCGCGAACCCTCGAAGGCTCACGACGTGCCTAGAAAAGGCGAGGACCC
ATATATTAATAGCCTAAAGCGGAGATGGAGCCGTCGCGATAGCTCTCGTG
TGTTTCGTCGAACGTAACCCCCCCACCCCTCCCCCTGATGTCTTGACACT
CAACCGGGCTTCAATGATCGACAATGCAGTAGTCTGCCGTTGCGTTGCGT
GGCACCGGATGCGACCGTTCGATATGATTATTTGCTCGAAATATCATAAC
TGACGATAAGTAAAATTATCCTTCTATGTCCGCGTTCGGGCGCTGCTGCG
CGCAAGCTACCCTTGACATCGTGCGCTCATCTCAAACCCGGCGAGCGGGA
CTTTCCATTCCCTACGCATGTCGTTAATTTGCGCACTGCTCCTTCTTCAA
CGGCTTGACGAAACGGCACCCTCTCACCGCCAGGGGGAATGCGTCTCCCT
CGTGATGGGATCGATGCTGTTGTCGAGAGAGGGCCTTGTGCGCGAAGGAG
GGCAGCTGCCTCCTTGGGTGTCGCTGTTGAGAGGCTGGCGCTGGAGCTAC
TACTATGCGAAGGCGGACGCGCGTAGGTGCTGGCTCTCAATGGATGACCT
CGTGCGCTTTCCGTGGACGGTGAGAGTTAGAAATGACAAGAGGAAGGAGA
GGGGGGGGGGTTGACAGCTCTCTCGCCAACCGAGATCTCCAAGGTTTGCG
TGAACAATGCTCCTTCTCAACAATGTATAGACTTACGGACAAGATTGATG
TCAGGTCAGCGGTTATTGATGTTTTTTTAATAATAAACGCAGTGTGTGTG
TGTGTGTGTGCGTCTGTTTATGAGAGATATCTCAATCTTAATCGTGTTTG
CTCCCCAAACCGCCTTTGGCGTCTTGTCTTCTCTCTTCGACGCGCTGCAA
GATGAGTTTCCCGGCGGACATTCCTACCCCTGCCTCACCGCTACTGGTGA
CGTGCAAGTTCCACCGCAACTTTTGCTACACTGACGAGGGCTTCTACCAA
AACGGCCTCGACTGGCACTTCGAAGACAGCCACCGCTGCGTCAAGGTTCG
TTACTGTCGGGGAAAGCCTTCCCTCTCTTCGCGGTTGCTTCGTCCAGGTA
CTTGCCTGGGGTGTAGTCGCGGCAGCATAGAACGGTCCTATGCATGAATG
CGTTGGTTATGCCCAGGGACGAGAATCGCGCACGTGGTTTTAGCTAGCGG
TGGGAACCATGATGGATCATATAGAGCTTAGAACTCGGCGCTGATTGTAT
TCCCAGCTCCACCCTCCAGTAGCAATAAAGGCAGGGGGTGATCGCCTGCT
TGGTGTGGAAACCCTACCCCGCACGAACGACGCAGGTGTCGAGCTATCCG
GCGCTAGAGGCCGAGCGCGATCCGTCGTGGGGATGGAGGCTGGTCAACGC
TCACGTGATCTTCGAGCAGCAGCGCCGACCCCCGTAGCCGCAAATGTCTC
TAATCTCCGCCAGCTGCGCCAGCCACCGCAAATAGAAGAGCCACAACAGT
ACAAGGTCGATCCGCCTTGCCTCTCGAATGTTCGCACTGCCCGAGGTGGC
CCGTATTCATCGGTTTGCTCGAGGGAGATATTTTGCTGCCTCGCGGGCCA
CTTTCGCCATTACACTGACTCACTGCTATTGATATTGGTATTGATATTAG
TATTGATATTGGTATTGATATTGATATTGGTCGGAATAGAGGATTGACGG
CGCGATCCGCCACAATCCAGTGTGTGGATAGATATATCCCTGTGTGTGTG
TGCACGAGGCTTTGGCTGGAACATTGTTCTTGACATTAGAATGAATTGGT
ACGTTTATATATATATATATATAACCTGAATGTCTCGCAAGTAGCTTCGT
TTATTGTCAAGTTTCCGCTCAGAGAGCTTGACGAGCCCATTTTCCCTGCT
GCTTCTATTTGTTTGGGGGTTGTGTGCGTTTTTGTGCTGATAGTTAGTGA
ATGTACCCACTGCGACTGTTACTGCCACTGTTACTGCCACTGCTATCACT
TGAACTTGGCGATACGAAGCTGGTGAGAAGGTCTGAGTGTTCGGAGGGTT
CAAATGAGTTCACATGTTTTTTTAAGGAGATTTGTTTTTGCTACCCGCGC
CAAATGTCTATCGACGCGTGTACGGCAGCCTTCAGCCCAGACAGAGGAGG
GAATAGTAGAGCTTGTGCTTCGTCACGGCCTCACTATCCACCAAGAACTC
CGGGGCGAGTAGCCTCATAGTCAAGTTAATACATCGGTTGAGGAGGCGTT
TTCCCGCGGCGTAAGTTGGTTGGTCGTTACATAGGAGGAAGCAGGGCAAT
AAGGTAAATGCCTACCGGGTGCATCTACAATACAAGCATAATGTTGTGTA
AATCATCCAATCTGAGCGTTCGCTCTCAAAGGTATTTTGGAAGCGGGGGG
ATCTTTTGGGAGTGTGGTTGGTCAGTGCTCGCAGCGTCGAAGGAATAGCG
ATCGATCGTGCCTCTTAAAGGTTGTGGTTGGTGAATAGGTTTAGGTATTT
CCCTCGCACTCTCTGCTTGGTGTCTCGTTCGCGCCTTGATGGCTGTACCA
GCCCTTTGTGCGGTTGCCTTGGTAAATTGGTTGCCTGACACTCAGAAGTT
GTCGAGGCCAGTTGGGTGTGTAATAAGAGTCTTGGACGTAGCTATATTGT
TATTTGATCTTGTGTTGTAGGTAATGTGTCTTGTGCTGTACTTGTAGGGT
GTAGTACGCGATGAGTGTAGTTTTATATATTTTGTTTATATCATACTTTA
TTGATACATTATTTATTATAAAAAAATGAATGAATTATTTATG
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Coding sequence (CDS) from alignment at H-elongata_contig5349:1017..4459-

>mRNA_H-elongata_contig5349.12694.1 ID=mRNA_H-elongata_contig5349.12694.1|Name=mRNA_H-elongata_contig5349.12694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig5349:1017..4459- (Himanthalia elongata Himel1 dioecious)
ATGCCAATCAAGACTATGAAGCGTCGCTTGGAGGAACTCGGCGCGAACCC
TCGAAGGCTCACGACGTGCCTAGAAAAGATGCCAATCAAGACTATGAAGC
GTCGCTTGGAGGAACTCGGCGCGAACCCTCGAAGGCTCACGACGTGCCTA
GAAAAGGGGGAATGCGTCTCCCTCGTGATGGGATCGATGCTGTTGTCGAG
AGAGGGCCTTGTGCGCGAAGGAGGGCAGCTGCCTCCTTGGGTGTCGCTGT
TGAGAGGCTGGCGCTGGAGCTACTACTATGCGAAGGCGGACGCGCGTAGG
TGCTGGCTCTCAATGGATGACCTCGTGCGCTTTCCGTGGACGGGGGAATG
CGTCTCCCTCGTGATGGGATCGATGCTGTTGTCGAGAGAGGGCCTTGTGC
GCGAAGGAGGGCAGCTGCCTCCTTGGGTGTCGCTGTTGAGAGGCTGGCGC
TGGAGCTACTACTATGCGAAGGCGGACGCGCGTAGGTGCTGGCTCTCAAT
GGATGACCTCGTGCGCTTTCCGTGGACGATGAGTTTCCCGGCGGACATTC
CTACCCCTGCCTCACCGCTACTGGTGACGTGCAAGTTCCACCGCAACTTT
TGCTACACTGACGAGGGCTTCTACCAAAACGGCCTCGACTGGCACTTCGA
AGACAGCCACCGCTGCGTCAAGATGAGTTTCCCGGCGGACATTCCTACCC
CTGCCTCACCGCTACTGGTGACGTGCAAGTTCCACCGCAACTTTTGCTAC
ACTGACGAGGGCTTCTACCAAAACGGCCTCGACTGGCACTTCGAAGACAG
CCACCGCTGCGTCAAGGTGTCGAGCTATCCGGCGCTAGAGGCCGAGCGCG
ATCCGTCGTGGGGATGGAGGCTGGTCAACGCTCACGTGATCTTCGAGCAG
CAGCGCCGACCCCCGTAGGTGTCGAGCTATCCGGCGCTAGAGGCCGAGCG
CGATCCGTCGTGGGGATGGAGGCTGGTCAACGCTCACGTGATCTTCGAGC
AGCAGCGCCGACCCCCGTAG
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