mRNA_H-elongata_contig53486.12692.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53486.12692.1
Unique NamemRNA_H-elongata_contig53486.12692.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A6H5KZP7_9PHAE (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.880e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPK 117
            GEQGVPV F GLRF+ GQ+VYADEDGIVVSD  L VP+
Sbjct:  144 GEQGVPVEFGGLRFKAGQFVYADEDGIVVSDEPLRVPR 181          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: D7FZC9_ECTSI (Regulator of ribonuclease activity A, RraA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 7.440e-10
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    7 EQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPK 117
            EQGVPV F GLRF+ GQ+VYADEDGI+VSD  L VP+
Sbjct:  171 EQGVPVEFGGLRFKAGQFVYADEDGIIVSDEPLRVPR 207          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A836S358_9GAMM (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A836S358_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 5.200e-9
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLV 108
            GE GVPV FSG+ FRPG+++YADEDG++VS  +L+
Sbjct:  125 GESGVPVTFSGVIFRPGEFIYADEDGVIVSSKKLI 159          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A7S0Z1N6_9CRYP (4-hydroxy-4-methyl-2-oxoglutarate aldolase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1N6_9CRYP)

HSP 1 Score: 54.3 bits (129), Expect = 3.410e-8
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPKAAALS 132
            G + VPVAF G+  RPGQYVYADEDGI+VSD  L    A+ +S
Sbjct:   71 GSRDVPVAFGGVSIRPGQYVYADEDGILVSDMPLDQVSASGVS 113          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: UPI001FA792F2 (ribonuclease E activity regulator RraA n=1 Tax=Actinomadura sp. OS3-83 TaxID=604353 RepID=UPI001FA792F2)

HSP 1 Score: 54.3 bits (129), Expect = 7.960e-8
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRL 105
            GE GVPV+F G+ FRPG ++Y+DEDGIVV+D +L
Sbjct:  125 GETGVPVSFGGVEFRPGDWLYSDEDGIVVADRQL 158          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A1H8G3Z9_9BACL (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Lihuaxuella thermophila TaxID=1173111 RepID=A0A1H8G3Z9_9BACL)

HSP 1 Score: 54.3 bits (129), Expect = 9.120e-8
Identity = 21/35 (60.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    1 QGEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRL 105
            +GE G+PV+F+G+++ PG YVYADEDG+VVS  +L
Sbjct:  124 KGEAGIPVSFAGIQWEPGHYVYADEDGVVVSKTKL 158          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: W2EHK4_9ACTN (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=2 Tax=Microbispora TaxID=2005 RepID=W2EHK4_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 1.140e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVV 111
            GE  VPV F  + FRPGQ+VY+DEDG+VVSD RL V
Sbjct:  125 GEVDVPVTFGDVTFRPGQWVYSDEDGVVVSDERLPV 160          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: UPI0004190DF4 (ribonuclease E activity regulator RraA n=1 Tax=Pseudomonas azotifigens TaxID=291995 RepID=UPI0004190DF4)

HSP 1 Score: 53.9 bits (128), Expect = 1.170e-7
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPK 117
            GE GVPV F G+ FRPG+YVYAD +GIVVS   L +P+
Sbjct:  125 GELGVPVTFCGVTFRPGEYVYADNNGIVVSPEPLQMPE 162          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: UPI0004A6FBA3 (ribonuclease E activity regulator RraA n=1 Tax=Pelobacter seleniigenes TaxID=407188 RepID=UPI0004A6FBA3)

HSP 1 Score: 53.9 bits (128), Expect = 1.210e-7
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRL 105
            GE G+PV+FSG+ FRPG ++YAD DG+VV+D R+
Sbjct:  130 GESGIPVSFSGVMFRPGAWLYADPDGLVVADERI 163          
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A7S2V174_9STRA (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V174_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.230e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVP 114
            GE  VPV F+G++F+PG +VYAD DGIVVS  +L +P
Sbjct:   84 GELDVPVEFAGIKFKPGHFVYADTDGIVVSPQKLEIP 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZP7_9PHAE4.880e-1176.324-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax... [more]
D7FZC9_ECTSI7.440e-1072.97Regulator of ribonuclease activity A, RraA n=1 Tax... [more]
A0A836S358_9GAMM5.200e-962.864-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax... [more]
A0A7S0Z1N6_9CRYP3.410e-860.474-hydroxy-4-methyl-2-oxoglutarate aldolase (Fragme... [more]
UPI001FA792F27.960e-864.71ribonuclease E activity regulator RraA n=1 Tax=Act... [more]
A0A1H8G3Z9_9BACL9.120e-860.004-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax... [more]
W2EHK4_9ACTN1.140e-766.674-hydroxy-4-methyl-2-oxoglutarate aldolase n=2 Tax... [more]
UPI0004190DF41.170e-763.16ribonuclease E activity regulator RraA n=1 Tax=Pse... [more]
UPI0004A6FBA31.210e-761.76ribonuclease E activity regulator RraA n=1 Tax=Pel... [more]
A0A7S2V174_9STRA1.230e-759.464-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53486contigH-elongata_contig53486:3649..3783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.5774384-CDS-H-elongata_contig53486:3648..37831622930871.5774384-CDS-H-elongata_contig53486:3648..3783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53486 3649..3783 -
1691679605.9076385-CDS-H-elongata_contig53486:3648..37831691679605.9076385-CDS-H-elongata_contig53486:3648..3783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53486 3649..3783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53486.12692.1prot_H-elongata_contig53486.12692.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53486 3649..3783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53486.12692.1

>prot_H-elongata_contig53486.12692.1 ID=prot_H-elongata_contig53486.12692.1|Name=mRNA_H-elongata_contig53486.12692.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QGEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPKAAALS*
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mRNA from alignment at H-elongata_contig53486:3649..3783-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53486.12692.1 ID=mRNA_H-elongata_contig53486.12692.1|Name=mRNA_H-elongata_contig53486.12692.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig53486:3649..3783- (Himanthalia elongata Himel1 dioecious)
CAAGGCGAACAAGGAGTTCCAGTCGCGTTTTCTGGATTACGATTCCGACC AGGACAGTACGTGTACGCCGACGAGGACGGGATCGTCGTATCCGACAACC GTCTGGTAGTGCCGAAGGCCGCGGCGCTGAGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig53486:3649..3783-

>mRNA_H-elongata_contig53486.12692.1 ID=mRNA_H-elongata_contig53486.12692.1|Name=mRNA_H-elongata_contig53486.12692.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig53486:3649..3783- (Himanthalia elongata Himel1 dioecious)
CAAGGCGAACAAGGAGTTCCAGTCGCGTTTTCTGGATTACGATTCCGACC
AGGACAGTACGTGTACGCCGACGAGGACGGGATCGTCGTATCCGACAACC
GTCTGGTAGTGCCGAAGGCCGCGGCGCTGAGCTAGCAAGGCGAACAAGGA
GTTCCAGTCGCGTTTTCTGGATTACGATTCCGACCAGGACAGTACGTGTA
CGCCGACGAGGACGGGATCGTCGTATCCGACAACCGTCTGGTAGTGCCGA
AGGCCGCGGCGCTGAGCTAG
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