mRNA_H-elongata_contig5346.12688.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 2.610e-17 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 1 WDGGDCCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQI--IPSPCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIML 258
+DGGDCC C+C C R F C+DP A + CE + PC D ++ W+VE++TQ +ALA AVNCS G FEVEWRG +++
Sbjct: 89 YDGGDCCVCSCQ--GVNCMRTSFECLDPSANEE-LHDCEPSPQLALPCTADAQQTWVVESSTQAQALAAAVNCSGGLFEVEWRGRVVV 173
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 2.310e-16 Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 1 WDGGDCCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIML 258
+DGGDCC C+C C F C+DP A + CE P PC D ++ W+VE++ Q +ALA AVNCS G FEVEWRG +++
Sbjct: 148 YDGGDCCVCSCQ--GVNCMTTSFECLDPSASEE-LHDCEPSPPLALPCTADAQQTWVVESSAQAQALAAAVNCSGGLFEVEWRGRVVV 232
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 5.840e-16 Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 1 WDGGDCCRCTCDDDKYIC-GREGFLCIDPEAVDNGTTTCEQIIPSPCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIML 258
+DGGDCC C+C +++C GR F C+DP TT C + C D R+W+VENT LA A+NC+ G F+VEWRGS+++
Sbjct: 72 YDGGDCCECSCQPGQFMCLGR--FDCLDPSF---NTTECVTNTTA-CAPDLSREWLVENTADAIELANAINCTGGTFDVEWRGSVLV 152
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 1.490e-15 Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 1 WDGGDCCRCTCDDDKYIC-GREGFLCIDPEAVDNGTTTCEQIIPSPCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIML 258
+DGGDCC C+C +Y+C GR F C+DP TT C + C D R+W+VE+T LA A+NC+ G F+VEWRGS+++
Sbjct: 178 YDGGDCCECSCQPAQYMCLGR--FDCLDPSF---NTTECVTNTTA-CSPDLSREWLVEDTADAIELANAINCTGGTFDVEWRGSVIV 258
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 3.810e-15 Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 1 WDGGD----------CCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDT 264
+DGGD CC CTC +C F C+DP+A D+ CE P+ PC + ++ W+V+++ Q +ALA AVNCS G FEVEWRG++++++
Sbjct: 90 YDGGDVSLVACSSLLCCYCTCS--GALCQSVTFDCLDPDA-DDEFYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVES 186
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 5.580e-13 Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 1 WDGGDCCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEI 270
+DGGDCC C+C +CG C+DP A D C P PC + ++ W+V+ + ALA AVNCS G FEVEW G+++++ I
Sbjct: 250 YDGGDCCICSCS--GTLCGGLAD-CLDPSAGDE-FYECSPPSPEALPCSAEVQQTWVVDEQEEAHALAAAVNCSGGSFEVEWSGTVVMEMPI 337
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 1.110e-10 Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 52 CGREGFLCIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEI 270
C F C+DP + NG C++ P+ PC + ++ W+V ++ + ALA AVNCS G FEVEWRGS+++++ I
Sbjct: 10 CYSSLFDCLDPGSS-NGFYECQEPPPATLPCSAEVQQSWVVADSAEALALAAAVNCSGGSFEVEWRGSVVVESPI 83
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 9.930e-10 Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query: 25 CTCDDDKYICGREG-----FLCIDPEAVDNGTTTCEQ--IIPSPCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEI 270
C +++ CG +G C+DP A + CE I +PCP D + W+V ++ Q ALA AVNCS G FEVEW G+++++ I
Sbjct: 174 CNPENNIASCGYDGGDGGELDCVDPSAPEE-LYECEAPPITTTPCPADSEWNWVVGDSEQALALALAVNCSGGSFEVEWVGTVVVNETI 261
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.200e-8 Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 73 CIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEI 270
C+DP A D C Q P PC + ++ W+++ Q ALA AVNCS G F+VEWRG+++++ I
Sbjct: 31 CLDPSAGDE-FYECSQPSPEALPCSLEVQQTWVLDEQEQAHALAAAVNCSGGSFQVEWRGTVVMEIPI 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5346.12688.1 >prot_H-elongata_contig5346.12688.1 ID=prot_H-elongata_contig5346.12688.1|Name=mRNA_H-elongata_contig5346.12688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp WDGGDCCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQIIPSPCPTDGback to top mRNA from alignment at H-elongata_contig5346:2702..2975+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5346.12688.1 ID=mRNA_H-elongata_contig5346.12688.1|Name=mRNA_H-elongata_contig5346.12688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=274bp|location=Sequence derived from alignment at H-elongata_contig5346:2702..2975+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5346:2702..2975+ >mRNA_H-elongata_contig5346.12688.1 ID=mRNA_H-elongata_contig5346.12688.1|Name=mRNA_H-elongata_contig5346.12688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig5346:2702..2975+ (Himanthalia elongata Himel1 dioecious)back to top |