mRNA_H-elongata_contig53422.12682.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53422.12682.1
Unique NamemRNA_H-elongata_contig53422.12682.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 7.880e-16
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 3
Query:  444 FKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGFGIKA 683
             +GA SGVRVN+++PG  +T ++G    E   AV     +I R I PEEIA +VIFLAS+DAAM TG+ Y MDGG+ IKA
Sbjct:  177 IEGAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLASEDAAMVTGSTYTMDGGWAIKA 256          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.080e-14
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  444 FKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGFGIKA 683
             +GA SGVRVN++APG  +T +FG    +   A      ++ R   PEEIAK+VIFLAS+DA M TG+ Y MDGG+ +KA
Sbjct:  179 IEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGGWAMKA 258          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: A0A378U1R5_MYROD (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=6 Tax=Myroides TaxID=76831 RepID=A0A378U1R5_MYROD)

HSP 1 Score: 75.9 bits (185), Expect = 1.510e-12
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  390 NPKLLV*RHNNVSRCTD-GFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGFGIK 680
            +P  +  +H  V      G++    G+RVNA+ PGF +T +  T  P++K   ++ +H +QRL TPEE+A+++ +LASD A+ ATG  Y ++GG+  K
Sbjct:  150 SPAYVAAKHGVVGLTKSAGWEYGTQGIRVNAVGPGFIETPLLSTMDPKVKH-FLESQHAMQRLGTPEEVAEIIAWLASDKASFATGGYYPIEGGYLAK 246          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: UPI00189E83B3 (glucose 1-dehydrogenase n=1 Tax=Paenibacillus sp. 1001270B_150601_E10 TaxID=2787079 RepID=UPI00189E83B3)

HSP 1 Score: 75.5 bits (184), Expect = 2.110e-12
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  435 TDGFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
            T G   A  G+RVNA+ PG+ DT +    +PE K++++   H + RL  PEE+AK V+FLASDDA+  TGT   +DGG+
Sbjct:  167 TLGIDYAKEGIRVNAVCPGYIDTPLIAAASPEHKQSLINL-HPMGRLGRPEEVAKAVLFLASDDASFVTGTTLLVDGGY 244          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: A0A6G2K3H4_9ACTN (SDR family oxidoreductase n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2K3H4_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 5.540e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  459 SGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGFGIKA 683
            +GVRVNA+APG+  T MF T  P  ++ ++ + H ++R+ TPEE+A +V FL S DAA  +GTV  +DGG   +A
Sbjct:  193 AGVRVNAVAPGYIRTDMFETSHPPERQVLLGRSHALERVGTPEEVAGVVSFLCSRDAAFVSGTVISVDGGLHARA 267          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: UPI001B06ABCE (SDR family oxidoreductase n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI001B06ABCE)

HSP 1 Score: 73.9 bits (180), Expect = 7.510e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  435 TDGFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
            T G + A  G+RVNA+ PG+ +T +     PE K+ +V   H I RL TPEE+AK V+FLASDDA+  TG    +DGG+
Sbjct:  167 TLGIQYASRGIRVNAVCPGYIETPLLKVLPPEEKQKLVDL-HPIGRLGTPEEVAKAVLFLASDDASFVTGASLLVDGGY 244          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: UPI000415A541 (glucose 1-dehydrogenase n=1 Tax=Fictibacillus gelatini TaxID=225985 RepID=UPI000415A541)

HSP 1 Score: 73.6 bits (179), Expect = 1.030e-11
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  453 ADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
            A  G+RVNA+ PG+ DT +     PEMK+ +V   H + RL  PEE+AK V+FLASDDA+  TGT   +DGG+
Sbjct:  173 AKEGIRVNAVCPGYIDTPLIAGADPEMKQQLVDL-HPLGRLGKPEEVAKAVLFLASDDASFITGTSLLIDGGY 244          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: UPI001E3825F5 (SDR family oxidoreductase n=1 Tax=Brevibacterium sp. HY170 TaxID=2898795 RepID=UPI001E3825F5)

HSP 1 Score: 73.6 bits (179), Expect = 1.120e-11
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  420 NVSRCTDGFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
            N+ R T G   AD G+RVNA+APG+ DT +  +    +++ +V+K   I RL TPEE+A++V FLASD A+  TG  + +DGG+
Sbjct:  169 NLVRST-GLTYADQGIRVNAVAPGYVDTPLVASLDERVRDTMVEKMP-IGRLGTPEEVAEVVCFLASDAASFVTGATWSVDGGY 250          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: E5WGB5_9BACI (Uncharacterized protein n=3 Tax=Bacillaceae TaxID=186817 RepID=E5WGB5_9BACI)

HSP 1 Score: 73.2 bits (178), Expect = 1.410e-11
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  420 NVSRCTDGFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
            N++R T G   A  G+RVNA+ PG+ DT +    +PE KE +++  H I RL  PEEIAK ++FLASDD++   G    +DGGF
Sbjct:  163 NLTR-TLGVTYASKGIRVNAVCPGYIDTDLIRNKSPEAKEELIRL-HPIGRLGQPEEIAKAILFLASDDSSFVCGANLMVDGGF 244          
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: A0A2D4WLT5_9ALTE (Uncharacterized protein n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2D4WLT5_9ALTE)

HSP 1 Score: 68.9 bits (167), Expect = 1.480e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  456 DSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
            DSG+R+NAI PGF +T +     PE   A +   H + RL TPE++AK  ++LASD ++  TG ++ +DGG+
Sbjct:    5 DSGIRINAICPGFIETPLLRESVPEEDRAHLASRHPMNRLGTPEDVAKAAMWLASDASSFVTGMLFSVDGGW 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQS3_ECTSI7.880e-1653.75Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec... [more]
D8LQS1_ECTSI1.080e-1450.00Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
A0A378U1R5_MYROD1.510e-1237.763-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
UPI00189E83B32.110e-1246.84glucose 1-dehydrogenase n=1 Tax=Paenibacillus sp. ... [more]
A0A6G2K3H4_9ACTN5.540e-1246.67SDR family oxidoreductase n=2 Tax=Acidimicrobiia b... [more]
UPI001B06ABCE7.510e-1248.10SDR family oxidoreductase n=2 Tax=Paenibacillus Ta... [more]
UPI000415A5411.030e-1150.68glucose 1-dehydrogenase n=1 Tax=Fictibacillus gela... [more]
UPI001E3825F51.120e-1145.24SDR family oxidoreductase n=1 Tax=Brevibacterium s... [more]
E5WGB5_9BACI1.410e-1146.43Uncharacterized protein n=3 Tax=Bacillaceae TaxID=... [more]
A0A2D4WLT5_9ALTE1.480e-1143.06Uncharacterized protein n=1 Tax=Alteromonadaceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53422contigH-elongata_contig53422:2..1030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog2880.D8LQS3
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size849
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53422.12682.1prot_H-elongata_contig53422.12682.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53422 165..524 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.7326841-UTR-H-elongata_contig53422:1..1641622930870.7326841-UTR-H-elongata_contig53422:1..164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53422 2..164 -
1691679605.5286-UTR-H-elongata_contig53422:1..1641691679605.5286-UTR-H-elongata_contig53422:1..164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53422 2..164 -
1622930870.8139923-UTR-H-elongata_contig53422:524..10301622930870.8139923-UTR-H-elongata_contig53422:524..1030Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53422 525..1030 -
1691679605.5679948-UTR-H-elongata_contig53422:524..10301691679605.5679948-UTR-H-elongata_contig53422:524..1030Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53422 525..1030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.7748027-CDS-H-elongata_contig53422:164..2601622930870.7748027-CDS-H-elongata_contig53422:164..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53422 165..260 -
1691679605.5463703-CDS-H-elongata_contig53422:164..2601691679605.5463703-CDS-H-elongata_contig53422:164..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53422 165..260 -
1622930870.7918446-CDS-H-elongata_contig53422:440..5241622930870.7918446-CDS-H-elongata_contig53422:440..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53422 441..524 -
1691679605.5575376-CDS-H-elongata_contig53422:440..5241691679605.5575376-CDS-H-elongata_contig53422:440..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53422 441..524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53422.12682.1

>prot_H-elongata_contig53422.12682.1 ID=prot_H-elongata_contig53422.12682.1|Name=mRNA_H-elongata_contig53422.12682.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQ
MDGGFGIKA*
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mRNA from alignment at H-elongata_contig53422:2..1030-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53422.12682.1 ID=mRNA_H-elongata_contig53422.12682.1|Name=mRNA_H-elongata_contig53422.12682.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-elongata_contig53422:2..1030- (Himanthalia elongata Himel1 dioecious)
TAGTCACATGGGCCACCACGGCGTGTACGCAGCCTCGAAGGCGGGCCTCG ACATGCTCATGAAGTATGCCGCAATCGAGGCGAGTGGTTATGCTCTTAAA TGATTTCGCTGATGCGCTGCTGAATGTTTGAACGTAAGAGCTACTACTGA GTGCGGAAGTACACGACTAGGTGCGCTCTTGGATAAGATATAAAGCTTAA TTTACCAGCGTGCAACCGCGCATGGAGAATAATATGTGGCACCTAAAATA GATGAGGGCGAGTATCATACGGAAACCTCCGCCTAGTGTTGGAGTGTGGT GATATCAGGACTGTAAATAGTCTCTTTACGCGCTATGGACCTAATAAGAA AGCTAATCTTTTATGAACGACTGATAGGATAACCAGGAAAACCCGAAGTT GCTTGTTTAACGCCATAATAACGTGTCGCGCTGTACCGACGGATTTAAGG GGGCGGATTCAGGGGTCCGAGTCAACGCAATAGCTCCTGGATTTACCGAT ACCGGGATGTTTGGCACTTTCACGCCAGAAATGAAGGAAGCAGTGGTCAA GAAAGAGCATGTCATCCAACGTCTAATTACACCAGAAGAGGTAAAAAAAA ATGTCTAGTTAAAGATGCAGGTCAACCCTTCGTCCACGATTTAGTGCTAC GCTGTGTGTTTTCTAATGTTGTGGGTATTTTCTTAGGGTATCAGTTATTT GCAGTCGTAATATGAATTCAGGCTATCATTCTCGTTTCTCGTGGTGCTCC CTATTCTGCTTGACTTCCAGATTGCTAAGCTGGTGATTTTTCTGGCGTCG GACGATGCTGCAATGGCTACAGGAACTGTATACCAGATGGACGGCGGTTT CGGCATCAAGGCCTAAGTTTGGAGCGGCCGCAGAGCTCTTTATCCTCGCA AAGCCAAGCACAGGGGTCAACAATCTAGCTTTGCCCCTTTGCTGCCTCCA AATAGAATACGTATTTCACGTGTAGTATGAAATTGGAATATGAATTGAAT TGAATTGAATTCTCACATAAGCTGATGTC
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Coding sequence (CDS) from alignment at H-elongata_contig53422:2..1030-

>mRNA_H-elongata_contig53422.12682.1 ID=mRNA_H-elongata_contig53422.12682.1|Name=mRNA_H-elongata_contig53422.12682.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig53422:2..1030- (Himanthalia elongata Himel1 dioecious)
ATGTTTGGCACTTTCACGCCAGAAATGAAGGAAGCAGTGGTCAAGAAAGA
GCATGTCATCCAACGTCTAATTACACCAGAAGAGATGTTTGGCACTTTCA
CGCCAGAAATGAAGGAAGCAGTGGTCAAGAAAGAGCATGTCATCCAACGT
CTAATTACACCAGAAGAGATTGCTAAGCTGGTGATTTTTCTGGCGTCGGA
CGATGCTGCAATGGCTACAGGAACTGTATACCAGATGGACGGCGGTTTCG
GCATCAAGGCCTAAATTGCTAAGCTGGTGATTTTTCTGGCGTCGGACGAT
GCTGCAATGGCTACAGGAACTGTATACCAGATGGACGGCGGTTTCGGCAT
CAAGGCCTAA
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