mRNA_H-elongata_contig53409.12680.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53409.12680.1
Unique NamemRNA_H-elongata_contig53409.12680.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53409.12680.1 vs. uniprot
Match: A0A6H5KKW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW1_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.110e-41
Identity = 151/435 (34.71%), Postives = 209/435 (48.05%), Query Frame = 1 
Query:    1 MDVDLGVGLGDDLGGFEGFDELLSNPNQ-ADFFKFCVLEDGVTQHDPRAPFVTTLPFSGSTDTSA--------------NQVGLEEYNATYDEWNRGQTREITKLDMTNAALMYATGKPRTRKRLEDDSSLEATEAAHPILKRRASAGPSATKKMQEFPCTNVLHSNVSGGDPSAKSTSFALEIPLDAGEKFKLAGVPPGWG--LAGARPTRVRSTPRMVAPRGAIKVKREVMSVSTRP-RISVFMSSTAARSGTKKHGGLSVTSLDGNPRASTLPRLSSPVMRDNHGPSPQASPRVPNAAPKRIKGLRVVVPRSRSQAEQRVVDSNPPVVAMGSRRSTSSSDGV------------------HAVPRLHRASSVGALTIAGSGDVVSRSQILSPTGSIIQSCELSEQLAGRSQRRNLVFKVFGSG-SRTSRPTS 1194
            MDVD+G+GLGDDLGGFEGFD + + PN  +DFFKFC +ED   Q   +   +T   F G    ++              + V  E+ +     W    + E T+    N  L    GKP+ RKR ++D +L + E+  P++KRR+S     T  +   P      S   G +   KS SF +     AG    ++   PG    +  ++P +         P GAIKV   V S + RP RISVFMS++                      A +   + +     + G       R  +A  +R+K LR+ + R RS AE+ VVD  P VVAMGS    +S+  +                    VP L RAS+VGALTIAGS +V+S S +LS +G IIQSCELS+++    QRRNLV +VFGSG S   RP S
Sbjct:   12 MDVDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQQHQQGMAITNSAFQGPPSPASMFAHQPKVSDFGQESWVPGEQQHLPIQAWPPTISSEPTQCVNPNLLLPIG-GKPKARKRHDEDEALVSKESVFPVMKRRSS-----TASISMNPSPPPTSSQQQGLE---KSHSFCVTT-ASAGWAPAVSHQQPGVARHVGSSQPPQQGGVAS--PPGGAIKVNTNVTSGTVRPPRISVFMSNSGRXXXXXXXXXXXXXXXXXAAPAPSPSMMPTAPGSYSGGVLEPTMDRTASAQAQRLKDLRITM-RDRSVAEKYVVDHTPAVVAMGSPHHLNSTSALLFSEDDHFTATASGSAAGPTVPSLRRASTVGALTIAGS-EVMSTSPVLSSSGRIIQSCELSDRVGDGGQRRNLVCRVFGSGGSPFMRPAS 432
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BLAST of mRNA_H-elongata_contig53409.12680.1 vs. uniprot
Match: D7G817_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G817_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.800e-16
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 1 
Query:    1 MDVDLGVGLGDDLGGFEGFDELLSNPNQ-ADFFKFCVLEDGVTQHDPRAPFVTTLPFSGS---TDTSANQVGLEEYNATYDEWNRGQTREI--------TKLDMTNAA----LMYATGKPRTRKRLEDDSSLEATEAAHPILKRRASAG-------PSATKKMQE 426
            MD+D+G+GLGDDLGGFEGFD + + PN  +DFFKFC +ED   QH  +   +T   F G      T  +Q  + ++    + W  G  +++        T  + T       L+ + GKPR RKR ++D +L + E+  P++KRR+S         P  T   QE
Sbjct:   12 MDMDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQHHQQDMAITNSAFQGPPSPASTFGHQPKVSDFGQ--ESWIPGGQQQLPIQAWPLTTSSEPTQRVNPNLLLPSGGKPRARKRHDEDEALVSKESVFPVIKRRSSTASISMNRSPPPTSSQQE 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53409.12680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKW1_9PHAE1.110e-4134.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G817_ECTSI6.800e-1635.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53409contigH-elongata_contig53409:1221..2907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1206
Cds size1206
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.4617765-CDS-H-elongata_contig53409:1220..16011622930870.4617765-CDS-H-elongata_contig53409:1220..1601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53409 1221..1601 +
1691679605.372083-CDS-H-elongata_contig53409:1220..16011691679605.372083-CDS-H-elongata_contig53409:1220..1601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53409 1221..1601 +
1622930870.4762776-CDS-H-elongata_contig53409:2082..29071622930870.4762776-CDS-H-elongata_contig53409:2082..2907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53409 2083..2907 +
1691679605.38094-CDS-H-elongata_contig53409:2082..29071691679605.38094-CDS-H-elongata_contig53409:2082..2907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53409 2083..2907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53409.12680.1prot_H-elongata_contig53409.12680.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53409 1221..2907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53409.12680.1

>prot_H-elongata_contig53409.12680.1 ID=prot_H-elongata_contig53409.12680.1|Name=mRNA_H-elongata_contig53409.12680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=402bp
MDVDLGVGLGDDLGGFEGFDELLSNPNQADFFKFCVLEDGVTQHDPRAPF
VTTLPFSGSTDTSANQVGLEEYNATYDEWNRGQTREITKLDMTNAALMYA
TGKPRTRKRLEDDSSLEATEAAHPILKRRASAGPSATKKMQEFPCTNVLH
SNVSGGDPSAKSTSFALEIPLDAGEKFKLAGVPPGWGLAGARPTRVRSTP
RMVAPRGAIKVKREVMSVSTRPRISVFMSSTAARSGTKKHGGLSVTSLDG
NPRASTLPRLSSPVMRDNHGPSPQASPRVPNAAPKRIKGLRVVVPRSRSQ
AEQRVVDSNPPVVAMGSRRSTSSSDGVHAVPRLHRASSVGALTIAGSGDV
VSRSQILSPTGSIIQSCELSEQLAGRSQRRNLVFKVFGSGSRTSRPTSGP
H*
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mRNA from alignment at H-elongata_contig53409:1221..2907+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53409.12680.1 ID=mRNA_H-elongata_contig53409.12680.1|Name=mRNA_H-elongata_contig53409.12680.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1687bp|location=Sequence derived from alignment at H-elongata_contig53409:1221..2907+ (Himanthalia elongata Himel1 dioecious)
ATGGATGTGGATTTAGGCGTGGGGCTGGGCGACGACCTGGGAGGCTTTGA
AGGCTTCGATGAGCTTCTCTCTAATCCCAACCAGGCCGACTTTTTTAAGT
TCTGCGTGTTAGAAGATGGTGTTACACAGCATGACCCCAGAGCCCCTTTC
GTCACAACTCTACCCTTTTCTGGAAGCACCGATACCAGCGCGAATCAGGT
TGGCTTGGAAGAGTACAATGCGACTTATGATGAATGGAATCGGGGACAGA
CTCGGGAAATTACGAAATTGGACATGACGAACGCTGCCTTGATGTATGCC
ACGGGGAAGCCGCGCACCCGCAAAAGACTCGAAGACGATAGCTCTCTAGA
GGCCACGGAGGCGGCACATCCCATCCTCAAGGTGTGTTATTTCACAAGCT
TTTTCGTTGTTGCCCGAGCTTCTTTGAGTTTTACGCCACAAGCGTCTCCC
CTACACACTATTGATGGGTTGTTGTTGTATACCCTCTTATTAATGCCTCC
CAAAAAAAGTATTTGGCGCCACGTAGCGGTACCTTACCTTCCTTTCAATA
TTATTAGTTACTTTAGACAAATCTTCAATAAATCTTCAATAAAAAGCGCC
ACTGTGTTAATTGAGAGTCGATACTCGTGCGTACGTCGTTAAATCGAGTC
GGAGCCACAACTGCTGTGGATGTCCATTTTCCCCCCATCTTTTTATGATG
CAGCCGGAAAAAAAGACATGGGTTAAAGGGACGTGCTCTTGGTAGATCTT
CTAATGCCAACCCCTTCCCTCTGGTTACACTGCGCCTCGTCTCATCTACG
GGAACCTTATGCCAATTGCTTTACATGGTTTCCCACTCTGCTATTGCTTT
TTATCTCGGCAGCGAAGAGCATCGGCGGGTCCTTCGGCGACAAAAAAAAT
GCAAGAATTCCCATGCACAAATGTGCTCCATTCGAACGTCAGCGGCGGAG
ACCCGTCGGCGAAGTCTACTAGCTTCGCCTTGGAAATTCCTTTAGATGCA
GGAGAAAAATTCAAGCTTGCGGGGGTTCCTCCCGGCTGGGGGCTTGCAGG
GGCTCGTCCTACGCGGGTCCGTTCGACTCCTCGTATGGTGGCGCCACGCG
GGGCCATAAAAGTAAAAAGAGAGGTCATGTCAGTCAGTACAAGACCGCGC
ATATCGGTATTCATGTCCTCGACGGCAGCTCGCAGCGGAACGAAGAAGCA
CGGGGGGCTTTCCGTGACGTCGCTGGATGGGAACCCTCGCGCTTCAACAC
TCCCTCGTTTGTCAAGCCCGGTGATGCGTGATAACCATGGGCCTTCTCCC
CAGGCTAGCCCACGCGTGCCCAATGCTGCTCCTAAACGGATCAAGGGACT
AAGGGTCGTGGTGCCCCGCAGTCGCAGTCAAGCTGAGCAGCGCGTGGTGG
ACTCAAACCCCCCCGTCGTGGCGATGGGTTCGCGCCGGAGCACCTCATCG
TCAGATGGCGTACACGCGGTCCCTCGGCTGCACCGGGCGAGTTCCGTAGG
CGCCCTAACAATTGCTGGCAGCGGAGACGTGGTGTCGAGGTCCCAGATAT
TATCCCCTACCGGAAGCATCATTCAATCCTGCGAACTTTCCGAGCAGTTG
GCTGGGCGGTCTCAGAGACGCAACTTGGTTTTCAAAGTTTTCGGCAGCGG
GAGCCGGACTAGCCGACCTACATCCGGGCCGCACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig53409:1221..2907+

>mRNA_H-elongata_contig53409.12680.1 ID=mRNA_H-elongata_contig53409.12680.1|Name=mRNA_H-elongata_contig53409.12680.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2412bp|location=Sequence derived from alignment at H-elongata_contig53409:1221..2907+ (Himanthalia elongata Himel1 dioecious)
ATGGATGTGGATTTAGGCGTGGGGCTGGGCGACGACCTGGGAGGCTTTGA
AGGCTTCGATGAGCTTCTCTCTAATCCCAACCAGGCCGACTTTTTTAAGT
TCTGCGTGTTAGAAGATGGTGTTACACAGCATGACCCCAGAGCCCCTTTC
GTCACAACTCTACCCTTTTCTGGAAGCACCGATACCAGCGCGAATCAGGT
TGGCTTGGAAGAGTACAATGCGACTTATGATGAATGGAATCGGGGACAGA
CTCGGGAAATTACGAAATTGGACATGACGAACGCTGCCTTGATGTATGCC
ACGGGGAAGCCGCGCACCCGCAAAAGACTCGAAGACGATAGCTCTCTAGA
GGCCACGGAGGCGGCACATCCCATCCTCAAGATGGATGTGGATTTAGGCG
TGGGGCTGGGCGACGACCTGGGAGGCTTTGAAGGCTTCGATGAGCTTCTC
TCTAATCCCAACCAGGCCGACTTTTTTAAGTTCTGCGTGTTAGAAGATGG
TGTTACACAGCATGACCCCAGAGCCCCTTTCGTCACAACTCTACCCTTTT
CTGGAAGCACCGATACCAGCGCGAATCAGGTTGGCTTGGAAGAGTACAAT
GCGACTTATGATGAATGGAATCGGGGACAGACTCGGGAAATTACGAAATT
GGACATGACGAACGCTGCCTTGATGTATGCCACGGGGAAGCCGCGCACCC
GCAAAAGACTCGAAGACGATAGCTCTCTAGAGGCCACGGAGGCGGCACAT
CCCATCCTCAAGCGAAGAGCATCGGCGGGTCCTTCGGCGACAAAAAAAAT
GCAAGAATTCCCATGCACAAATGTGCTCCATTCGAACGTCAGCGGCGGAG
ACCCGTCGGCGAAGTCTACTAGCTTCGCCTTGGAAATTCCTTTAGATGCA
GGAGAAAAATTCAAGCTTGCGGGGGTTCCTCCCGGCTGGGGGCTTGCAGG
GGCTCGTCCTACGCGGGTCCGTTCGACTCCTCGTATGGTGGCGCCACGCG
GGGCCATAAAAGTAAAAAGAGAGGTCATGTCAGTCAGTACAAGACCGCGC
ATATCGGTATTCATGTCCTCGACGGCAGCTCGCAGCGGAACGAAGAAGCA
CGGGGGGCTTTCCGTGACGTCGCTGGATGGGAACCCTCGCGCTTCAACAC
TCCCTCGTTTGTCAAGCCCGGTGATGCGTGATAACCATGGGCCTTCTCCC
CAGGCTAGCCCACGCGTGCCCAATGCTGCTCCTAAACGGATCAAGGGACT
AAGGGTCGTGGTGCCCCGCAGTCGCAGTCAAGCTGAGCAGCGCGTGGTGG
ACTCAAACCCCCCCGTCGTGGCGATGGGTTCGCGCCGGAGCACCTCATCG
TCAGATGGCGTACACGCGGTCCCTCGGCTGCACCGGGCGAGTTCCGTAGG
CGCCCTAACAATTGCTGGCAGCGGAGACGTGGTGTCGAGGTCCCAGATAT
TATCCCCTACCGGAAGCATCATTCAATCCTGCGAACTTTCCGAGCAGTTG
GCTGGGCGGTCTCAGAGACGCAACTTGGTTTTCAAAGTTTTCGGCAGCGG
GAGCCGGACTAGCCGACCTACATCCGGGCCGCACTAGCGAAGAGCATCGG
CGGGTCCTTCGGCGACAAAAAAAATGCAAGAATTCCCATGCACAAATGTG
CTCCATTCGAACGTCAGCGGCGGAGACCCGTCGGCGAAGTCTACTAGCTT
CGCCTTGGAAATTCCTTTAGATGCAGGAGAAAAATTCAAGCTTGCGGGGG
TTCCTCCCGGCTGGGGGCTTGCAGGGGCTCGTCCTACGCGGGTCCGTTCG
ACTCCTCGTATGGTGGCGCCACGCGGGGCCATAAAAGTAAAAAGAGAGGT
CATGTCAGTCAGTACAAGACCGCGCATATCGGTATTCATGTCCTCGACGG
CAGCTCGCAGCGGAACGAAGAAGCACGGGGGGCTTTCCGTGACGTCGCTG
GATGGGAACCCTCGCGCTTCAACACTCCCTCGTTTGTCAAGCCCGGTGAT
GCGTGATAACCATGGGCCTTCTCCCCAGGCTAGCCCACGCGTGCCCAATG
CTGCTCCTAAACGGATCAAGGGACTAAGGGTCGTGGTGCCCCGCAGTCGC
AGTCAAGCTGAGCAGCGCGTGGTGGACTCAAACCCCCCCGTCGTGGCGAT
GGGTTCGCGCCGGAGCACCTCATCGTCAGATGGCGTACACGCGGTCCCTC
GGCTGCACCGGGCGAGTTCCGTAGGCGCCCTAACAATTGCTGGCAGCGGA
GACGTGGTGTCGAGGTCCCAGATATTATCCCCTACCGGAAGCATCATTCA
ATCCTGCGAACTTTCCGAGCAGTTGGCTGGGCGGTCTCAGAGACGCAACT
TGGTTTTCAAAGTTTTCGGCAGCGGGAGCCGGACTAGCCGACCTACATCC
GGGCCGCACTAG
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