mRNA_H-elongata_contig53348.12676.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53348.12676.1
Unique NamemRNA_H-elongata_contig53348.12676.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: D7FU47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU47_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 6.670e-44
Identity = 84/113 (74.34%), Postives = 91/113 (80.53%), Query Frame = 1
Query:  151 MSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCS----WRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            MS+TLEEALLLAE AS    PP+D       PA  VA+  +    WRAA+R+GALADANVLRAHG RL+VAEKNIG PLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS
Sbjct:    1 MSITLEEALLLAETASQQ-SPPRDGEFGVEGPAVTVAAAAAASGGWRAAERSGALADANVLRAHGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 112          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: A0A835ZA41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA41_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.190e-36
Identity = 90/159 (56.60%), Postives = 102/159 (64.15%), Query Frame = 1
Query:    1 HPALSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            H  L  L+AAV   + N KNTA+LLE++ AV+ L GGRVTFCKSGKDRTAMSVTLEE+ +L            D H            G    A     AL  ANVLRAHG R+ VAEKNIG PLYSFNA+QRQFIPELY+ P QTIQDV+TS   RDS
Sbjct: 1423 HMHLLRLEAAVMAQQHNQKNTAVLLESERAVQLLGGGRVTFCKSGKDRTAMSVTLEESFMLL-----------DKH----------LDGVGGEAR----ALRVANVLRAHGTRIAVAEKNIGSPLYSFNAIQRQFIPELYRAPVQTIQDVLTSFQKRDS 1556          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: A0A1V9ZK10_9STRA (Inositol-3,4-bisphosphate 4-phosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZK10_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.790e-33
Identity = 82/156 (52.56%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   10 LSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            L  L AAV+ +    KNT ILLEA  AVRR+ GGRVT+CKSGKDRTAMSVTL++A LL +  +S+   P        AP   V+       AD    LA AN++R HG R++VA+KN+G P YSFNALQR+ +PE+Y+PP  TIQD++TS   RDS
Sbjct:  983 LDPLMAAVQAENAAAKNTRILLEASDAVRRMNGGRVTYCKSGKDRTAMSVTLDQARLLFKRQASAN--PFLVTSPTHAPTDMVS-------ADE---LAAANIMREHGVRIVVAKKNVGRPKYSFNALQRKLLPEIYRPPTSTIQDMVTSVTARDS 1126          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: A0A7S3Y7E2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7E2_HETAK)

HSP 1 Score: 116 bits (291), Expect = 2.190e-30
Identity = 71/159 (44.65%), Postives = 91/159 (57.23%), Query Frame = 1
Query:    1 HPALSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            H  L  L  AV     + KN  ILLEA+ A  RL GGR TFCKSGKDRTAM+ TLE+A+LL ++                     +  G      D +  L  AN++RA G RL  A KN+G P YSFN+ QRQF+P +Y+PP + I D+ITS L+RD+
Sbjct:   14 HFLLEGLARAVEAQSTSEKNVDILLEAERAAYRLGGGRCTFCKSGKDRTAMAATLEQAVLLEQH---------------------LGPGAGR---DFDAILQRANLMRARGVRLANAHKNVGRPKYSFNSFQRQFMPAIYKPPIEVIDDMITSTLHRDT 148          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: A0A7S2FWH5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWH5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.070e-30
Identity = 69/159 (43.40%), Postives = 85/159 (53.46%), Query Frame = 1
Query:    1 HPALSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            HP  + L  A+  +    KN  IL EAQ     L GG+ TFCKSGKDRTAM VTL+++ +L E       P +                           L DAN +RA G R+ VA KNIGY  YSFN LQ  F+PE+Y+PPPQT+QD  TS + RDS
Sbjct:   14 HPLCAALANAISKESTGVKNVDILEEAQRVTIGLGGGQATFCKSGKDRTAMGVTLQQSRILGEGHGCGTSPQR--------------------------ILRDANTMRATGTRIEVANKNIGYYKYSFNPLQVSFMPEMYRPPPQTVQDFTTSMIKRDS 146          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: T0QHN7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QHN7_SAPDV)

HSP 1 Score: 123 bits (309), Expect = 1.150e-29
Identity = 73/156 (46.79%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   10 LSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            L  L A V+ +    KNT ILLEA  AVRR+ GGRVT+CKSGKDRTAMSVTL++A +L + A+               P    +   + +    +  LA AN++R +G R+ VA+KN+G P YSFN++QR+ +PELY+PP  TIQD++TS   RDS
Sbjct:  994 LDPLMAVVQAENAAAKNTRILLEASDAVRRMNGGRVTYCKSGKDRTAMSVTLDQARVLFKRAN------------VQNPFLVTSPTHASQEMVSSDELAAANLMREYGVRIAVAKKNVGRPKYSFNSIQRKLLPELYRPPTSTIQDMVTSVTARDS 1137          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: A0A7S2UYF4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYF4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.030e-28
Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 1
Query:   67 ILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENAS-SSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            ILLEA+    +L GGRVTFCKSGKDRTAM++TLE+++LL ++ + +S++   D                             AN++R HG R+ +AEKN+G P YSFN LQRQF+P++Y+PP + I D+ITS L RD+
Sbjct:    3 ILLEAENVCYQLGGGRVTFCKSGKDRTAMAITLEQSMLLEQHLNHTSFESVVD----------------------------HANLMRIHGTRIAIAEKNVGRPKYSFNNLQRQFMPKIYRPPTEVIDDMITSTLQRDT 112          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: A0A6G0XWA4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWA4_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.530e-28
Identity = 74/159 (46.54%), Postives = 94/159 (59.12%), Query Frame = 1
Query:    1 HPALSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            H  L  L A V+ +    KNT ILLEA   VRRL GGRVT+CKSGKDRTAMSVTLE+A LL +  S             P          +  A + N A    N++R  G R+ +A+KN+G   YSFNALQR+ +P++Y+PP  TIQD++TS   RDS
Sbjct:  948 HLLLDPLMAVVQSENAASKNTRILLEASDVVRRLNGGRVTYCKSGKDRTAMSVTLEQARLLFKRVSG----------VNPLHLLGATEQLNISADELNAA----NLMREFGIRIKIAKKNVGRFKYSFNALQRKMLPDIYRPPVSTIQDMVTSVTARDS 1092          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: A0A397A4G3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A4G3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.200e-28
Identity = 73/159 (45.91%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    1 HPALSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            H  L  L A V+ +    KNT ILLEA   VRRL GGRVT+CKSGKDRTAMSVTLE+A LL +  S             P          +  A +    L  AN++R  G R+ +A KN+G   YSFNA+QR+ +P++Y+PP  TIQD++TS   RDS
Sbjct:  339 HLLLDPLMAVVQSENAAAKNTRILLEASDVVRRLRGGRVTYCKSGKDRTAMSVTLEQARLLFKRVSG----------VNPLHLLGATEQLNIGAEE----LHAANIMREFGIRIEIANKNVGRYKYSFNAIQRKMLPDIYRPPMSTIQDIVTSVTARDS 483          
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Match: A0A7S2SU40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU40_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.580e-28
Identity = 75/159 (47.17%), Postives = 88/159 (55.35%), Query Frame = 1
Query:    1 HPALSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGALADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 477
            HP    L AA+R +    KN  IL EAQ  V  L GG+ TFCKSGKDRTAM+VTL+++ +L E                         GC      +   LADAN +RA G RL VA KNIGY  YSFN LQ  FIPE+Y+PP  TIQD  TS + RDS
Sbjct:  462 HPLCEALAAAIRRETERQKNVEILEEAQRVVFSLGGGQCTFCKSGKDRTAMAVTLQQSRVLGEF-----------------------HGCGTGKIRQ---LADANTMRALGTRLDVASKNIGYAKYSFNPLQVSFIPEMYRPPTATIQDYATSIMKRDS 594          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53348.12676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU47_ECTSI6.670e-4474.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZA41_9STRA1.190e-3656.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9ZK10_9STRA6.790e-3352.56Inositol-3,4-bisphosphate 4-phosphatase n=1 Tax=Ac... [more]
A0A7S3Y7E2_HETAK2.190e-3044.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FWH5_9STRA8.070e-3043.40Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
T0QHN7_SAPDV1.150e-2946.79Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2UYF4_9STRA2.030e-2844.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0XWA4_9STRA2.530e-2846.54Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A397A4G3_9STRA3.200e-2845.91Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S2SU40_9STRA4.580e-2847.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53348contigH-elongata_contig53348:977..2142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue7.4e-27
Seed eggNOG ortholog112098.XP_008613333.1
EggNOG free text desc.phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity
EggNOG OGsKOG4428@1,KOG4428@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.1383605-CDS-H-elongata_contig53348:976..13181622930870.1383605-CDS-H-elongata_contig53348:976..1318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53348 977..1318 -
1691679605.2383423-CDS-H-elongata_contig53348:976..13181691679605.2383423-CDS-H-elongata_contig53348:976..1318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53348 977..1318 -
1622930870.1560907-CDS-H-elongata_contig53348:2004..21421622930870.1560907-CDS-H-elongata_contig53348:2004..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53348 2005..2142 -
1691679605.2486506-CDS-H-elongata_contig53348:2004..21421691679605.2486506-CDS-H-elongata_contig53348:2004..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53348 2005..2142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53348.12676.1prot_H-elongata_contig53348.12676.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53348 977..2142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53348.12676.1

>prot_H-elongata_contig53348.12676.1 ID=prot_H-elongata_contig53348.12676.1|Name=mRNA_H-elongata_contig53348.12676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
HPALSDLDAAVRDDRVNHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTA
MSVTLEEALLLAENASSSWKPPQDAHDTAPAPAAAVASGCSWRAADRNGA
LADANVLRAHGCRLMVAEKNIGYPLYSFNALQRQFIPELYQPPPQTIQDV
ITSALNRDS*
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mRNA from alignment at H-elongata_contig53348:977..2142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53348.12676.1 ID=mRNA_H-elongata_contig53348.12676.1|Name=mRNA_H-elongata_contig53348.12676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-elongata_contig53348:977..2142- (Himanthalia elongata Himel1 dioecious)
CACCCGGCGCTATCGGATTTGGATGCCGCGGTAAGGGACGATCGAGTCAA CCACAAGAATACTGCAATTCTTCTCGAGGCGCAAGTGGCGGTCAGAAGGC TTTGCGGGGGGAGGGTGACCTTCTGCAAGTCGGGCAAGGTAACAGTACTG TACATTACAGCACCCGTATACAGTACCAATCATCTTATGTATATATATAT AACCTTTGGAGGGGCTGGGGGGGAGATGTGTACTTAAATACTGTGTACTT AAATACTGCATGCCTTAGCTGTTAGAACATTGACCACGCGTCTTCGGGAG GGAGGACGGAGCACTGTTTTTGAAAAGGCGTTATCCAGGGGGGGGGAGGG CGTGCTCTAATTGACCATTGACCAGGCGTCCTCGGGAGGGAGGACGGAGT ATTGTTCCTACGTAAACGATCGCCGATGATCAAATCGTTGCGTCTTATTT ACTAGCTAATAGTGTCGCAAAAAAGTGTTTTTCTATCCTTTCTACACATT TTGCCTTTTTTATCCCTTCGAAACTGATTGGTTTGGGTGTTTGACTTGAA TTTACTGACTAATTGATTGATAATTGATAATTGATCTATTTGTTTGTTTC GTCCGATGGGTTGATTGATCCGATTGATTAAATTGGTTGGTCGATCCAAT TGAATGCTAGGAGAAGCGCGAGACCAGGGTATTACAAAAAAATGTGTAGG TGTCTTAAGATCTCCCTGTATCATCGCGCAGAATGGAAAGACACAGCCAT CGGTCTTTTTCGACCATGCGATCGTTCACCCCCGAACCGAAGCACCGACA ACATTTTCTTTCGCCGCCCCACAGGACCGCACGGCGATGTCCGTCACCCT AGAGGAAGCGCTTCTGCTGGCGGAAAATGCCTCGTCGTCATGGAAACCCC CGCAGGATGCGCACGACACGGCGCCAGCCCCAGCAGCGGCGGTGGCATCG GGGTGCAGTTGGAGAGCGGCGGATCGCAACGGGGCGCTAGCGGATGCGAA CGTTCTTCGCGCGCACGGTTGTCGGCTGATGGTTGCCGAGAAGAATATCG GGTATCCGCTTTACTCCTTTAACGCTCTCCAGAGGCAGTTCATACCGGAG CTCTACCAACCGCCGCCGCAGACCATTCAGGACGTGATCACCTCGGCGTT AAATCGGGATTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig53348:977..2142-

>mRNA_H-elongata_contig53348.12676.1 ID=mRNA_H-elongata_contig53348.12676.1|Name=mRNA_H-elongata_contig53348.12676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig53348:977..2142- (Himanthalia elongata Himel1 dioecious)
CACCCGGCGCTATCGGATTTGGATGCCGCGGTAAGGGACGATCGAGTCAA
CCACAAGAATACTGCAATTCTTCTCGAGGCGCAAGTGGCGGTCAGAAGGC
TTTGCGGGGGGAGGGTGACCTTCTGCAAGTCGGGCAAGCACCCGGCGCTA
TCGGATTTGGATGCCGCGGTAAGGGACGATCGAGTCAACCACAAGAATAC
TGCAATTCTTCTCGAGGCGCAAGTGGCGGTCAGAAGGCTTTGCGGGGGGA
GGGTGACCTTCTGCAAGTCGGGCAAGGACCGCACGGCGATGTCCGTCACC
CTAGAGGAAGCGCTTCTGCTGGCGGAAAATGCCTCGTCGTCATGGAAACC
CCCGCAGGATGCGCACGACACGGCGCCAGCCCCAGCAGCGGCGGTGGCAT
CGGGGTGCAGTTGGAGAGCGGCGGATCGCAACGGGGCGCTAGCGGATGCG
AACGTTCTTCGCGCGCACGGTTGTCGGCTGATGGTTGCCGAGAAGAATAT
CGGGTATCCGCTTTACTCCTTTAACGCTCTCCAGAGGCAGTTCATACCGG
AGCTCTACCAACCGCCGCCGCAGACCATTCAGGACGTGATCACCTCGGCG
TTAAATCGGGATTCGTGAGACCGCACGGCGATGTCCGTCACCCTAGAGGA
AGCGCTTCTGCTGGCGGAAAATGCCTCGTCGTCATGGAAACCCCCGCAGG
ATGCGCACGACACGGCGCCAGCCCCAGCAGCGGCGGTGGCATCGGGGTGC
AGTTGGAGAGCGGCGGATCGCAACGGGGCGCTAGCGGATGCGAACGTTCT
TCGCGCGCACGGTTGTCGGCTGATGGTTGCCGAGAAGAATATCGGGTATC
CGCTTTACTCCTTTAACGCTCTCCAGAGGCAGTTCATACCGGAGCTCTAC
CAACCGCCGCCGCAGACCATTCAGGACGTGATCACCTCGGCGTTAAATCG
GGATTCGTGA
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