mRNA_H-elongata_contig53338.12675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53338.12675.1
Unique NamemRNA_H-elongata_contig53338.12675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A6H5JXE2_9PHAE (Asparagine synthetase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.630e-33
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 GPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREV 234
            G AAL+ EL KDQ RLW RNLGRDDR IADHG+EARFP+LDE VV Y+R LPL++VCNMDEP G+GDKKVLREV
Sbjct:   62 GDAALAEELLKDQDRLWTRNLGRDDRAIADHGREARFPFLDEAVVGYLRCLPLREVCNMDEPVGIGDKKVLREV 135          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: D7G9H9_ECTSI (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H9_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.080e-31
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
Query:   13 GPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREV 234
            G AAL+ EL KDQ RLW RNLGRDDR IADHG+EARFP+LDE VV Y+RSLPL++VCNMDEP G+GDKKVLREV
Sbjct:  953 GDAALAEELLKDQGRLWTRNLGRDDRAIADHGREARFPFLDEDVVGYLRSLPLREVCNMDEPVGIGDKKVLREV 1026          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A7S4D4W9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4W9_HETAK)

HSP 1 Score: 111 bits (277), Expect = 8.340e-27
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    4 RNAGPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREV 234
            R  G  AL  EL  D ARLW RNLGRDDRC++DHG+EARFP+LDEGVV+ +R+LPL+++ ++  PPG+GDKK+LR+V
Sbjct:  318 REGGEGALRRELAADVARLWTRNLGRDDRCVSDHGREARFPFLDEGVVAAVRALPLRRIVDLSLPPGIGDKKILRDV 394          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A2P6N4R8_9EUKA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N4R8_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 5.710e-26
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    4 RNAGPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREVREN-RTKQNKTGTGRTI 282
            +  G   L  EL KD  RLW+RNLGRDDR I+DHG+EARFP+LDEGVV YI SLPL  +C+ D PPGVGDKK+LR++ +    K+  T T R I
Sbjct:  433 KKGGKMELRRELDKDIHRLWQRNLGRDDRLISDHGREARFPFLDEGVVRYISSLPLNVICDFDCPPGVGDKKILRQLADRIGLKEASTLTKRAI 526          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A2N9FRC1_FAGSY (Asparagine synthetase domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FRC1_FAGSY)

HSP 1 Score: 100 bits (249), Expect = 1.130e-25
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   25 LSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREV 234
            L  E++ D  R+W+RNLGRDDRCIAD GKEARFP+LDE V+  + ++PL ++ N+D+P G+GDKK+LREV
Sbjct:    9 LHEEMKLDMQRIWKRNLGRDDRCIADSGKEARFPFLDEDVIRILLNIPLWEIANLDQPSGIGDKKILREV 78          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A498IBB0_MALDO (Uncharacterized protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498IBB0_MALDO)

HSP 1 Score: 108 bits (270), Expect = 1.200e-25
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 RNAGPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREVRE 240
            RN    AL+ E++ D  R+W+RNLGRDDRCIADHGKEARFP+LDE V+  +   PL +V N+D+P G+GDKK+LREV E
Sbjct:  248 RNGSWLALNEEMKLDMQRIWKRNLGRDDRCIADHGKEARFPFLDEDVIRILLGFPLWEVTNLDQPSGIGDKKILREVAE 326          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A498I960_MALDO (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498I960_MALDO)

HSP 1 Score: 108 bits (270), Expect = 1.960e-25
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 RNAGPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREVRE 240
            RN    AL+ E++ D  R+W+RNLGRDDRCIADHGKEARFP+LDE V+  +   PL +V N+D+P G+GDKK+LREV E
Sbjct:  533 RNGSWLALNEEMKLDMQRIWKRNLGRDDRCIADHGKEARFPFLDEDVIRILLGFPLWEVTNLDQPSGIGDKKILREVAE 611          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A540LS36_MALBA (Glutamine amidotransferase type-2 domain-containing protein n=4 Tax=Malus TaxID=3749 RepID=A0A540LS36_MALBA)

HSP 1 Score: 107 bits (267), Expect = 4.740e-25
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 RNAGPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREVRE 240
            RN    +L+ E++ D  R+W+RNLGRDDRCIADHGKEARFP+LDE V+  +   PL +V N+D+P G+GDKK+LREV E
Sbjct:  533 RNGSWLSLNEEMKLDMQRIWKRNLGRDDRCIADHGKEARFPFLDEDVIRILLGFPLWEVTNLDQPSGIGDKKILREVAE 611          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A251R5P9_PRUPE (Uncharacterized protein n=1 Tax=Prunus persica TaxID=3760 RepID=A0A251R5P9_PRUPE)

HSP 1 Score: 106 bits (265), Expect = 6.530e-25
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 RNAGPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREVRE 240
            RN    AL  E++ D  R+W+RNLGRDDRCIAD+GKEARFP+LDE V+  +  +PL +V N+D+P GVGDKK+LREV E
Sbjct:  387 RNGSWLALHEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIKILLGIPLWEVTNLDQPSGVGDKKILREVAE 465          
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Match: A0A0K9Q6G8_ZOSMR (Asparagine synthetase domain-containing protein (Fragment) n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9Q6G8_ZOSMR)

HSP 1 Score: 105 bits (262), Expect = 6.550e-25
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   13 GPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVSYIRSLPLQKVCNMDEPPGVGDKKVLREV 234
            G AAL  E++ D  R+W+RNLGRDDRCI+DHGKEARFP+LDE V+  +  +PL ++ N+DEP G GDKK+LREV
Sbjct:  132 GWAALDEEMKLDMHRIWKRNLGRDDRCISDHGKEARFPFLDEDVIKCLLEMPLWEIANLDEPSGKGDKKILREV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53338.12675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE2_9PHAE2.630e-3377.03Asparagine synthetase domain-containing protein n=... [more]
D7G9H9_ECTSI3.080e-3178.38Glutamine amidotransferase type-2 domain-containin... [more]
A0A7S4D4W9_HETAK8.340e-2762.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2P6N4R8_9EUKA5.710e-2658.51Glutamine amidotransferase type-2 domain-containin... [more]
A0A2N9FRC1_FAGSY1.130e-2560.00Asparagine synthetase domain-containing protein n=... [more]
A0A498IBB0_MALDO1.200e-2560.76Uncharacterized protein n=1 Tax=Malus domestica Ta... [more]
A0A498I960_MALDO1.960e-2560.76Glutamine amidotransferase type-2 domain-containin... [more]
A0A540LS36_MALBA4.740e-2559.49Glutamine amidotransferase type-2 domain-containin... [more]
A0A251R5P9_PRUPE6.530e-2560.76Uncharacterized protein n=1 Tax=Prunus persica Tax... [more]
A0A0K9Q6G8_ZOSMR6.550e-2562.16Asparagine synthetase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53338contigH-elongata_contig53338:2936..3567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.9e-26
Seed eggNOG ortholog2880.D7G9H9
EggNOG free text desc.asparagine synthase (glutamine-hydrolyzing) activity
EggNOG OGsCOG0367@1,KOG0573@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.0717595-CDS-H-elongata_contig53338:2935..30711622930870.0717595-CDS-H-elongata_contig53338:2935..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53338 2936..3071 -
1691679605.216271-CDS-H-elongata_contig53338:2935..30711691679605.216271-CDS-H-elongata_contig53338:2935..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53338 2936..3071 -
1622930870.092387-CDS-H-elongata_contig53338:3409..35671622930870.092387-CDS-H-elongata_contig53338:3409..3567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53338 3410..3567 -
1691679605.2265058-CDS-H-elongata_contig53338:3409..35671691679605.2265058-CDS-H-elongata_contig53338:3409..3567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53338 3410..3567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53338.12675.1prot_H-elongata_contig53338.12675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53338 2936..3567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53338.12675.1

>prot_H-elongata_contig53338.12675.1 ID=prot_H-elongata_contig53338.12675.1|Name=mRNA_H-elongata_contig53338.12675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MRNAGPAALSSELQKDQARLWRRNLGRDDRCIADHGKEARFPYLDEGVVS
YIRSLPLQKVCNMDEPPGVGDKKVLREVRENRTKQNKTGTGRTIFPVG
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mRNA from alignment at H-elongata_contig53338:2936..3567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53338.12675.1 ID=mRNA_H-elongata_contig53338.12675.1|Name=mRNA_H-elongata_contig53338.12675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=632bp|location=Sequence derived from alignment at H-elongata_contig53338:2936..3567- (Himanthalia elongata Himel1 dioecious)
ATGCGAAATGCAGGGCCGGCGGCACTCTCTTCCGAGCTGCAGAAGGACCA GGCACGCCTATGGAGGCGCAACCTTGGACGAGATGATCGGTGCATCGCCG ACCACGGAAAAGAGGCTAGATTTCCTTACTTGGATGAAGGGGTTGTCAGT TATATCAGGTGAGATCTCCGGTCAGACCGATATGTCAAAGTGGCCGAGGT ATATACGGAACGCGCTCGCTCACCCCCGATTGCTTTCATTACGATGCGTG GAGGAAGAGGCGTAGCGGGAGAGAAATTTCCGTCTACGAGATAAACAAAA TGTGCTTACATTCCATTCTTCATGGAAGTTCATATGCTTATTCGTAAAAA CACTTACGTCCACTTCCACTGCGCGTTTGTAGAAGGAGTCAGCCGCGCCC CCCTTCCCTTCAACAACTGGTACGTGGCTCTTGCGCGTTTACCTTACAGT AGCTAATGCGATATCCCGATCACCGGGATTCTTTGCTGGCCCGCAGGTCT TTACCGCTCCAGAAGGTGTGTAACATGGACGAGCCGCCCGGCGTCGGAGA CAAAAAGGTTCTTCGGGAGGTGAGAGAAAACAGAACAAAACAAAACAAAA CAGGAACGGGTCGAACTATCTTCCCTGTTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig53338:2936..3567-

>mRNA_H-elongata_contig53338.12675.1 ID=mRNA_H-elongata_contig53338.12675.1|Name=mRNA_H-elongata_contig53338.12675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig53338:2936..3567- (Himanthalia elongata Himel1 dioecious)
ATGCGAAATGCAGGGCCGGCGGCACTCTCTTCCGAGCTGCAGAAGGACCA
GGCACGCCTATGGAGGCGCAACCTTGGACGAGATGATCGGTGCATCGCCG
ACCACGGAAAAGAGGCTAGATTTCCTTACTTGGATGAAGGGGTTGTCAGT
TATATCAGATGCGAAATGCAGGGCCGGCGGCACTCTCTTCCGAGCTGCAG
AAGGACCAGGCACGCCTATGGAGGCGCAACCTTGGACGAGATGATCGGTG
CATCGCCGACCACGGAAAAGAGGCTAGATTTCCTTACTTGGATGAAGGGG
TTGTCAGTTATATCAGGTCTTTACCGCTCCAGAAGGTGTGTAACATGGAC
GAGCCGCCCGGCGTCGGAGACAAAAAGGTTCTTCGGGAGGTGAGAGAAAA
CAGAACAAAACAAAACAAAACAGGAACGGGTCGAACTATCTTCCCTGTTG
GCGTCTTTACCGCTCCAGAAGGTGTGTAACATGGACGAGCCGCCCGGCGT
CGGAGACAAAAAGGTTCTTCGGGAGGTGAGAGAAAACAGAACAAAACAAA
ACAAAACAGGAACGGGTCGAACTATCTTCCCTGTTGGC
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