mRNA_H-elongata_contig53316.12671.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53316.12671.1
Unique NamemRNA_H-elongata_contig53316.12671.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: D7FR01_ECTSI (PC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR01_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.500e-19
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:   22 LQLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            ++LG  K+VDVREFKG I +DIREYYE   GE++PGKKGI+L+ E W+ LKE+M+DI AK+EEL
Sbjct:   64 IELGNKKFVDVREFKGKIYVDIREYYEK-DGEMRPGKKGISLSTEHWEVLKENMDDINAKVEEL 126
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: H2ZUX1_LATCH (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZUX1_LATCH)

HSP 1 Score: 89.0 bits (219), Expect = 3.340e-19
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   25 QLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            Q+GK +YV+VREFKG +LIDIREY+    GE+KPG+KGI+LNPEQW  LKE M DI   I +L
Sbjct:    3 QIGKMRYVNVREFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQMSDIDDAIRKL 65
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: C1C437_LITCT (Activated RNA polymerase II transcriptional coactivator p15 n=3 Tax=Ranoidea TaxID=30352 RepID=C1C437_LITCT)

HSP 1 Score: 90.5 bits (223), Expect = 5.010e-19
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 DPLVGMFLQLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            DP   MF Q+GK +YV VR+FKG +LIDIREY+    GE+KPG+KGI+LNPEQW  LKE M DI   I +L
Sbjct:   60 DPEDNMF-QIGKMRYVSVRDFKGKVLIDIREYFMDQQGELKPGRKGISLNPEQWSQLKEQMSDIDNAIRKL 129
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: UPI0001CBA191 (activated RNA polymerase II transcriptional coactivator p15-like isoform X1 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA191)

HSP 1 Score: 88.6 bits (218), Expect = 1.880e-18
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   22 LQLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            + L K +YV VR+FKG +LIDIREYY   SGE+KPG+KGI+LN EQW  LKES+ +I  KIEEL
Sbjct:   52 IALAKMRYVTVRDFKGKVLIDIREYYNDNSGELKPGRKGISLNKEQWDKLKESIGEIDEKIEEL 115
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: A0A3P8VVN1_CYNSE (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VVN1_CYNSE)

HSP 1 Score: 88.6 bits (218), Expect = 2.400e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   25 QLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            Q+GK +YV VREFKG +LIDIREY+ +A+GE+KPGKKGI+LNPEQW  LK  M DI   ++ +
Sbjct:   63 QIGKMRYVSVREFKGKVLIDIREYWMNANGEMKPGKKGISLNPEQWNQLKHQMSDIDDAMKRI 125
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: A0A3B3TBF2_9TELE (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3TBF2_9TELE)

HSP 1 Score: 88.6 bits (218), Expect = 2.400e-18
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   25 QLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            Q+GK +YV VR+FKG +LIDIREY+    GE+KPGKKGI+LNPEQW  LKE M DI   ++ L
Sbjct:   63 QIGKMRYVSVRDFKGKVLIDIREYWMDQQGEMKPGKKGISLNPEQWNQLKEQMSDIDEAVKRL 125
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: A0A8C4B0P0_9TELE (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4B0P0_9TELE)

HSP 1 Score: 88.6 bits (218), Expect = 3.050e-18
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   25 QLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            Q+GK +YV VR+FKG +LIDIREY+   +GE+KPGKKGI+LNPEQW  LKE M DI   I  L
Sbjct:   72 QIGKMRYVSVRDFKGKVLIDIREYWMDQAGEMKPGKKGISLNPEQWNQLKEQMSDIDDAIRRL 134
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: A0A2D0PRJ9_ICTPU (Activated RNA polymerase II transcriptional coactivator p15 n=6 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0PRJ9_ICTPU)

HSP 1 Score: 88.2 bits (217), Expect = 3.360e-18
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   25 QLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            Q+GK +YV VR+FKG +LID+REY+   +GE+KPGKKGI+LNPEQW  LKE M DI   I  L
Sbjct:   63 QIGKMRYVSVRDFKGKVLIDVREYWMDQAGEMKPGKKGISLNPEQWNQLKEQMSDIDDAIRRL 125
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: A0A8B9G909_9PSIT (Activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9G909_9PSIT)

HSP 1 Score: 87.4 bits (215), Expect = 4.020e-18
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   16 MFLQLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            + LQ+GK +YV VR+FKG +LIDIREY+    GE+KPG+KGI+LNPEQW  LKE + DI   + +L
Sbjct:   42 LVLQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISDIDDAVRKL 107
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BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Match: A0A6P6NC73_CARAU (Activated RNA polymerase II transcriptional coactivator p15 n=5 Tax=Cyprinoidei TaxID=30727 RepID=A0A6P6NC73_CARAU)

HSP 1 Score: 87.8 bits (216), Expect = 4.690e-18
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   25 QLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWKALKESMEDITAKIEEL 213
            Q+GK +YV VR+FKG +LIDIREY+   +GE+KPGKKGI+LNPEQW  LKE M DI   +  L
Sbjct:   63 QIGKLRYVSVRDFKGKVLIDIREYWMDQAGEMKPGKKGISLNPEQWNQLKEQMSDIDDAVRRL 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53316.12671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR01_ECTSI2.500e-1964.06PC4 domain-containing protein n=2 Tax=Ectocarpus T... [more]
H2ZUX1_LATCH3.340e-1963.49Activated RNA polymerase II transcriptional coacti... [more]
C1C437_LITCT5.010e-1960.56Activated RNA polymerase II transcriptional coacti... [more]
UPI0001CBA1911.880e-1864.06activated RNA polymerase II transcriptional coacti... [more]
A0A3P8VVN1_CYNSE2.400e-1861.90Activated RNA polymerase II transcriptional coacti... [more]
A0A3B3TBF2_9TELE2.400e-1861.90Activated RNA polymerase II transcriptional coacti... [more]
A0A8C4B0P0_9TELE3.050e-1863.49Activated RNA polymerase II transcriptional coacti... [more]
A0A2D0PRJ9_ICTPU3.360e-1861.90Activated RNA polymerase II transcriptional coacti... [more]
A0A8B9G909_9PSIT4.020e-1857.58Activated RNA polymerase II transcriptional coacti... [more]
A0A6P6NC73_CARAU4.690e-1861.90Activated RNA polymerase II transcriptional coacti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53316contigH-elongata_contig53316:680..2145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D7FR01
Preferred nameSUB1
GOsGO:0000726,GO:0000981,GO:0001205,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003697,GO:0003700,GO:0003705,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006369,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007329,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009371,GO:0009373,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010721,GO:0010948,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0022603,GO:0022607,GO:0023052,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0034243,GO:0034306,GO:0034307,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0042173,GO:0042174,GO:0042221,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043618,GO:0043620,GO:0043900,GO:0043901,GO:0043933,GO:0043937,GO:0043939,GO:0043940,GO:0043942,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045786,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045945,GO:0046019,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0060260,GO:0060261,GO:0060284,GO:0060395,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070887,GO:0070897,GO:0070898,GO:0071310,GO:0071444,GO:0071704,GO:0071824,GO:0071840,GO:0075297,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901522,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000241,GO:2000242,GO:2001141
EggNOG free text desc.positive regulation of transcription initiation from RNA polymerase II promoter
EggNOG OGsKOG2712@1,KOG2712@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-09_003070.1
Exons2
Model size859
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53316.12671.1prot_H-elongata_contig53316.12671.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53316 695..1505 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.6222482-UTR-H-elongata_contig53316:679..6941622930869.6222482-UTR-H-elongata_contig53316:679..694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53316 680..694 +
1691679605.0021238-UTR-H-elongata_contig53316:679..6941691679605.0021238-UTR-H-elongata_contig53316:679..694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53316 680..694 +
1622930869.6714773-UTR-H-elongata_contig53316:1505..21451622930869.6714773-UTR-H-elongata_contig53316:1505..2145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53316 1506..2145 +
1691679605.034429-UTR-H-elongata_contig53316:1505..21451691679605.034429-UTR-H-elongata_contig53316:1505..2145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53316 1506..2145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.6369276-CDS-H-elongata_contig53316:694..8441622930869.6369276-CDS-H-elongata_contig53316:694..844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53316 695..844 +
1691679605.0139825-CDS-H-elongata_contig53316:694..8441691679605.0139825-CDS-H-elongata_contig53316:694..844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53316 695..844 +
1622930869.650148-CDS-H-elongata_contig53316:1451..15051622930869.650148-CDS-H-elongata_contig53316:1451..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53316 1452..1505 +
1691679605.0240161-CDS-H-elongata_contig53316:1451..15051691679605.0240161-CDS-H-elongata_contig53316:1451..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53316 1452..1505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53316.12671.1

>prot_H-elongata_contig53316.12671.1 ID=prot_H-elongata_contig53316.12671.1|Name=mRNA_H-elongata_contig53316.12671.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MFLQLGKNKYVDVREFKGMILIDIREYYESASGEIKPGKKGIALNPEQWK
ALKESMEDITAKIEELQ*
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mRNA from alignment at H-elongata_contig53316:680..2145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53316.12671.1 ID=mRNA_H-elongata_contig53316.12671.1|Name=mRNA_H-elongata_contig53316.12671.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1466bp|location=Sequence derived from alignment at H-elongata_contig53316:680..2145+ (Himanthalia elongata Himel1 dioecious)
GACCCTCTGGTTGGCATGTTTCTGCAGCTGGGCAAGAACAAGTACGTGGA
CGTGCGCGAGTTCAAGGGAATGATACTTATTGATATCCGAGAATACTACG
AATCCGCTAGCGGCGAGATAAAGCCGGGCAAGAAGGGTATCGCGCTTAAT
CCCGAACAGTGGAAGGTGCGACTGCTTGCTGCTGCTGTTATCAAGCCAAA
AGGGAGCAGAAGACGCGATGCCAGCTAGAGAAAATGCATACTTGTATAGA
GTATAGAGTTATAGCAGAGAAAAGAGCGACCCGTATTATTCGCGGGTGTT
GATGTTTTATCTGTCGGTTATCGTCGGACATGGAACACAGTTGCGGCATC
CCTCACAGCACGACAGCATGCGTAGTGCCCTGGGTTCTTTTATAGAGCAA
AAAGGACCACTTGGGGATGGGCCTCAAGTTTTGCTCTTCACTTTTCCGAT
AATTATGCCAATACATCACTTACCGATAGGCGTGTTTCTTAGCTGCGACA
GCGTACGCCAAACAGGGCGCTCAGCTGTCGGGGCTAAACCTTGGCGTGAC
TGCCGATTATATTCGCAATTTTTCAGCTTGATTTTTTATTTCTGAAACAA
CTTTTTTAGGGATTGTTTTTGAAGCCTCGAGTTTCGGTGGCAGTAGGAGG
GACTTTATTCCTGACCTTCTACCCTTCTATTCGACACGAGGTGCTTACGC
TCTTGAACACTTGGCTCCTTTCGCTGATGTACGTTCCGTTTTGCTCTCAT
CGTGACATGTTGTTATTAATAGGCGCTGAAGGAAAGCATGGAGGACATCA
CCGCTAAAATAGAGGAGCTTCAATGAGCAGGACGGGGGTCAATAAAAAGC
GCATCGCGTCCGGGGACTGTTGCCCGCGTGAGCATCTCTATCCACCGAAG
CATTATAAAGTACGTTGTGATGACTTGGCGAACCTGAAAATGGATCAATG
TGAAGGGAAACATCTGCGACAGGAGAGCCCGAAATAGCTCCTCACAAGCC
CCCCGTCGGCTGTCAAGTGAACTACGCTCTTTCATCTCGCGGGCGACGAT
CACGTGTTGCGATGAATCGCGTATTTCAAACATAGAACTGAGGCGACGAG
ATATGTTCGAAAAAAATCGAAGGGAAATGTGGGTGGTCGGCGCGGAAGAG
CGCAAGCGCGGAGAGGTTGTGACCTCCGCACACATTTTTGTTTTACTGGC
TGGATTATGTTCGCAAGTAATCATACCGTTACTATGATGAGCATTAGGGT
TGCGGAGGTCGATGGATCTCTGAGGAAAAGTATAACGTGGGTAGGAACAT
GACCGACGATTCCCTCCCGTCGCCCTGATCATGATCTTCCTCTCAATAGA
GGGATATAAATTTAATGAGGGCGTGAAACATTCCGTCGGCGCACACGCGT
GACTGTGGGCATCCCGGACGTGTCGATTGGAGTTACGACTCGTCCTACCC
GCTTGACAGTTTTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig53316:680..2145+

>mRNA_H-elongata_contig53316.12671.1 ID=mRNA_H-elongata_contig53316.12671.1|Name=mRNA_H-elongata_contig53316.12671.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig53316:680..2145+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCTGCAGCTGGGCAAGAACAAGTACGTGGACGTGCGCGAGTTCAA
GGGAATGATACTTATTGATATCCGAGAATACTACGAATCCGCTAGCGGCG
AGATAAAGCCGGGCAAGAAGGGTATCGCGCTTAATCCCGAACAGTGGAAG
ATGTTTCTGCAGCTGGGCAAGAACAAGTACGTGGACGTGCGCGAGTTCAA
GGGAATGATACTTATTGATATCCGAGAATACTACGAATCCGCTAGCGGCG
AGATAAAGCCGGGCAAGAAGGGTATCGCGCTTAATCCCGAACAGTGGAAG
GCGCTGAAGGAAAGCATGGAGGACATCACCGCTAAAATAGAGGAGCTTCA
ATGAGCGCTGAAGGAAAGCATGGAGGACATCACCGCTAAAATAGAGGAGC
TTCAATGA
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