mRNA_H-elongata_contig5331.12668.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5331.12668.1
Unique NamemRNA_H-elongata_contig5331.12668.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5331.12668.1 vs. uniprot
Match: A0A6H5K1G5_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-9
Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    1 CSKSACLKRYCECFSVGVACSDKCRCKYCKNTVPAARARTEPGIAGAGGGDCCGIRPIEAVFAAQRRPYAAVAKMVNAISQNE-RGDMPGISGNK 282
            CSKSACLKRYCECF+ G+ACS+KCRCK CKNT  A  AR    +  A     CG     A+ AA  R   A        +++  RG +PG  G K
Sbjct:   78 CSKSACLKRYCECFNGGIACSNKCRCKDCKNTAKAVGARARAKMMAAK--SSCG-----AMIAADGRGVIAAXXXXXXXTESRTRGGIPGRHGVK 165
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BLAST of mRNA_H-elongata_contig5331.12668.1 vs. uniprot
Match: A0A8J5XVP9_DIALT (CRC domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVP9_DIALT)

HSP 1 Score: 62.4 bits (150), Expect = 1.290e-6
Identity = 35/93 (37.63%), Postives = 44/93 (47.31%), Query Frame = 1 
Query:    1 CSKSACLKRYCECFSVGVACSDKCRCKYCKNTVPA-----ARARTEPGIAGAGGGDCCGIRPIEAVFAAQRRPYAAVAKMVNAISQNERGDMP 264
            C KS CLK+YCECF  G+ACSDKC+C  C N   A     A AR    + G+ G   CG R   A   A   P   +   ++ +  N     P
Sbjct:  231 CKKSGCLKKYCECFGAGIACSDKCKCDNCHNREDADGFDDAHARRRKRLRGSSGSAACGRRLSLASTVADDEPRTELLDGLSDVEVNGESHAP 323
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BLAST of mRNA_H-elongata_contig5331.12668.1 vs. uniprot
Match: A0A6H5JPL0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.740e-5
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 CSKSACLKRYCECFSVGVACSDKCRCKYCKNTV 99
            C KSACLK+YCECF+ GVACS+KC C  C+NTV
Sbjct:  456 CRKSACLKKYCECFNKGVACSEKCNCVACRNTV 488
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BLAST of mRNA_H-elongata_contig5331.12668.1 vs. uniprot
Match: D8LP28_ECTSI (TSO1 transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP28_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.150e-5
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 CSKSACLKRYCECFSVGVACSDKCRCKYCKNTV 99
            C KSACLK+YCECF+ GVACS+KC C  C+NTV
Sbjct:  102 CRKSACLKKYCECFNKGVACSEKCNCVGCRNTV 134
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BLAST of mRNA_H-elongata_contig5331.12668.1 vs. uniprot
Match: I2CP39_NANGC (Tesmin tso1-like cxc domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP39_NANGC)

HSP 1 Score: 57.8 bits (138), Expect = 4.290e-5
Identity = 33/82 (40.24%), Postives = 39/82 (47.56%), Query Frame = 1 
Query:    1 CSKSACLKRYCECFSVGVACSDKCRCKYCKNTVPAARARTEPGIAGAGGGDCCGIRPIEAVFAAQRRPYAAVAKMVNAISQN 246
            C KSACLK+YCECF+ G  CSDKC C  C+N            +AG G       RP E    A RR   A  +    + QN
Sbjct:  299 CRKSACLKKYCECFNAGARCSDKCSCVGCQN------------VAGLG-------RPYEEAVMAARRGATAARQAAQQVGQN 361
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BLAST of mRNA_H-elongata_contig5331.12668.1 vs. uniprot
Match: K8YUM5_NANGC (Tesmin tso1-like cxc domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUM5_NANGC)

HSP 1 Score: 57.8 bits (138), Expect = 4.300e-5
Identity = 33/82 (40.24%), Postives = 39/82 (47.56%), Query Frame = 1 
Query:    1 CSKSACLKRYCECFSVGVACSDKCRCKYCKNTVPAARARTEPGIAGAGGGDCCGIRPIEAVFAAQRRPYAAVAKMVNAISQN 246
            C KSACLK+YCECF+ G  CSDKC C  C+N            +AG G       RP E    A RR   A  +    + QN
Sbjct:  299 CRKSACLKKYCECFNAGARCSDKCSCVGCQN------------VAGLG-------RPYEEAVMAARRGATAARQAAQQVGQN 361
[Close]
BLAST of mRNA_H-elongata_contig5331.12668.1 vs. uniprot
Match: A0A4D9CLN2_9STRA (CRC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLN2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.900e-5
Identity = 33/82 (40.24%), Postives = 39/82 (47.56%), Query Frame = 1 
Query:    1 CSKSACLKRYCECFSVGVACSDKCRCKYCKNTVPAARARTEPGIAGAGGGDCCGIRPIEAVFAAQRRPYAAVAKMVNAISQN 246
            C KSACLK+YCECF+ G  CSDKC C  C+N            +AG G       RP E    A RR   A  +    + QN
Sbjct:  461 CRKSACLKKYCECFNAGARCSDKCSCVGCQN------------VAGLG-------RPYEEAVMAARRGATAARQAAQQVGQN 523
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5331.12668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K1G5_9PHAE1.190e-946.32CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J5XVP9_DIALT1.290e-637.63CRC domain-containing protein n=2 Tax=Diacronema l... [more]
A0A6H5JPL0_9PHAE2.740e-572.73CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LP28_ECTSI3.150e-572.73TSO1 transcription factor (Partial) (Fragment) n=1... [more]
I2CP39_NANGC4.290e-540.24Tesmin tso1-like cxc domain-containing protein (Fr... [more]
K8YUM5_NANGC4.300e-540.24Tesmin tso1-like cxc domain-containing protein (Fr... [more]
A0A4D9CLN2_9STRA5.900e-540.24CRC domain-containing protein n=2 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5331contigH-elongata_contig5331:4649..6444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1797
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.46223-CDS-H-elongata_contig5331:4648..50951622930869.46223-CDS-H-elongata_contig5331:4648..5095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5331 4649..5095 +
1691679604.9512875-CDS-H-elongata_contig5331:4648..50951691679604.9512875-CDS-H-elongata_contig5331:4648..5095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5331 4649..5095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.477427-UTR-H-elongata_contig5331:5095..64441622930869.477427-UTR-H-elongata_contig5331:5095..6444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5331 5096..6444 +
1691679604.9629977-UTR-H-elongata_contig5331:5095..64441691679604.9629977-UTR-H-elongata_contig5331:5095..6444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5331 5096..6444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5331.12668.1prot_H-elongata_contig5331.12668.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5331 4649..5095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5331.12668.1

>prot_H-elongata_contig5331.12668.1 ID=prot_H-elongata_contig5331.12668.1|Name=mRNA_H-elongata_contig5331.12668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
CSKSACLKRYCECFSVGVACSDKCRCKYCKNTVPAARARTEPGIAGAGGG
DCCGIRPIEAVFAAQRRPYAAVAKMVNAISQNERGDMPGISGNKRPKSMA
MEERAQDRAVAGVDVCPSFPPTAKADFRSPLGVLTGVGSASNRGTTGT*
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mRNA from alignment at H-elongata_contig5331:4649..6444+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5331.12668.1 ID=mRNA_H-elongata_contig5331.12668.1|Name=mRNA_H-elongata_contig5331.12668.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1796bp|location=Sequence derived from alignment at H-elongata_contig5331:4649..6444+ (Himanthalia elongata Himel1 dioecious)
TGTAGCAAATCGGCATGCCTGAAGCGGTACTGCGAGTGCTTTAGCGTCGG
CGTTGCTTGCTCGGACAAGTGCCGCTGCAAATATTGCAAGAACACCGTCC
CGGCCGCGCGGGCGAGGACCGAGCCAGGCATCGCCGGCGCTGGTGGGGGC
GACTGCTGCGGTATACGCCCCATCGAGGCCGTGTTCGCCGCCCAACGCCG
CCCTTATGCTGCCGTTGCGAAGATGGTGAACGCGATATCTCAGAACGAAA
GAGGAGACATGCCGGGAATTTCGGGGAACAAAAGGCCCAAGTCGATGGCC
ATGGAAGAACGCGCTCAGGATAGGGCCGTAGCCGGAGTCGATGTGTGCCC
GTCTTTTCCGCCAACCGCCAAAGCTGACTTTCGGTCTCCCCTAGGCGTGC
TCACTGGGGTCGGATCGGCCTCGAACAGGGGAACGACCGGTACGTGATTC
GGTTGCTGCGGAAGAAATCTGGCTAAACTTCCTGGAATGTGGGTGTGCTA
AGGTGTGTGTCGATGGGTGGTGCCTTAGGGGCGTGCTGCGATGAGGATGT
AGATGGTGGACTGCGAGGCCTCTATCGGGAGCTGGAGTTAGAGCTGGTGT
CGTGCCGAATGTGTCGTGGCGTTCTAAAAATAGGGAAGAGGGCCTCCGAA
GTTATCCTGCTTCGAACCGTCCGTCATTTTGGATATCGCTTGATGGTCCT
TACCCGATCCCTCTTGCTGGGAGGGGGTGAGGCAAGCGATGCGTGATATC
TACCAAAGCCCAGAGAGTATTGGCCCACAATCGTGTGGGTTCTTTGTGTA
GCTCGCTGCGATCGGCGGTCGATCAAAAGTAGAAAACGGGACCCCCCACT
TTTAGAATAATAGGCGCCACGAATGCTCTAAGCGGTGCAATGATAAGGCA
GCAGCGCCCCAAGTCAGAACAGGTCGCCGGGCTATTTTCGACGAGCCTTG
TATGCTGGTTGCCACGATCTAGGAGGAGAATGATTTAGCCTCGGTTACGG
CCGCGGACCTTTTAAAGAGATTTTTTTTTAGGTAGAGGGGCGGGGATGGG
GCGTTCTCGTATCGCGATAAAGGAGGGGATGAAGGAAAGGACGCATGATA
AATGCGCATCTTCCCTCGTCGATCGTGGTCGTCGTGCTTCCCGCTCTCGT
GTCGCGTGGAATGAAGAATGATGTTGGTAAGAGGCTCTAAGCCACCAAGG
TGTCGCCGTTCTCTACACCATAGCCATCAGCTTTTGACGGTTCTTTGGTA
TGATCTGTTGGGCTGTATCGGTGGGACAGGGGCACAGGGTTTCGCTCCTT
CTAAATGAGCCGTGTTCATGCGGGGTGGGGTGTGTTTGTGGGTGTGGGGG
TAATAATAGATGTAGGGGGTGCTAAACGTTCCCCTTAATGTCGGTGATAG
CTCGTGCGTCGCTGTCTCTCTCTCCCTCTGTTTCCGCTGTCTGAAGCTAC
CTCAACGGTAGATCAGCCAGTCAGAGTTGGGATCGCCGTTCTCTCTGTAG
TAGGATACGCATGTCGTTCTTTTTTCCAGGGCAAAAAATACATAAATAGC
GATGTTCCACCCTCCACGGGTAAACGTAACGTACCTAAAGTGGAGAATGG
AGAGGGGGGGGCAGGCAATAGGTAAAGGGAATATTTGCTAAGTGTGGAGG
GGGTAAGGGTCGTGGGCCGTCAGGGGTCGGATGTAGTCAGTCGATTGGAG
GGCCGAAGGGGGGAGGAGAGGGTTTTGTGGAAAGTTCCTCGGCTGGCATG
TTTTTCAGTGTGGGTGGGAGGGGAAGGAATATGGGGGGCGGTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig5331:4649..6444+

>mRNA_H-elongata_contig5331.12668.1 ID=mRNA_H-elongata_contig5331.12668.1|Name=mRNA_H-elongata_contig5331.12668.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig5331:4649..6444+ (Himanthalia elongata Himel1 dioecious)
TGTAGCAAATCGGCATGCCTGAAGCGGTACTGCGAGTGCTTTAGCGTCGG
CGTTGCTTGCTCGGACAAGTGCCGCTGCAAATATTGCAAGAACACCGTCC
CGGCCGCGCGGGCGAGGACCGAGCCAGGCATCGCCGGCGCTGGTGGGGGC
GACTGCTGCGGTATACGCCCCATCGAGGCCGTGTTCGCCGCCCAACGCCG
CCCTTATGCTGCCGTTGCGAAGATGGTGAACGCGATATCTCAGAACGAAA
GAGGAGACATGCCGGGAATTTCGGGGAACAAAAGGCCCAAGTCGATGGCC
ATGGAAGAACGCGCTCAGGATAGGGCCGTAGCCGGAGTCGATGTGTGCCC
GTCTTTTCCGCCAACCGCCAAAGCTGACTTTCGGTCTCCCCTAGGCGTGC
TCACTGGGGTCGGATCGGCCTCGAACAGGGGAACGACCGGTACGTGATGT
AGCAAATCGGCATGCCTGAAGCGGTACTGCGAGTGCTTTAGCGTCGGCGT
TGCTTGCTCGGACAAGTGCCGCTGCAAATATTGCAAGAACACCGTCCCGG
CCGCGCGGGCGAGGACCGAGCCAGGCATCGCCGGCGCTGGTGGGGGCGAC
TGCTGCGGTATACGCCCCATCGAGGCCGTGTTCGCCGCCCAACGCCGCCC
TTATGCTGCCGTTGCGAAGATGGTGAACGCGATATCTCAGAACGAAAGAG
GAGACATGCCGGGAATTTCGGGGAACAAAAGGCCCAAGTCGATGGCCATG
GAAGAACGCGCTCAGGATAGGGCCGTAGCCGGAGTCGATGTGTGCCCGTC
TTTTCCGCCAACCGCCAAAGCTGACTTTCGGTCTCCCCTAGGCGTGCTCA
CTGGGGTCGGATCGGCCTCGAACAGGGGAACGACCGGTACGTGA
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