mRNA_H-elongata_contig533.12664.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig533.12664.1
Unique NamemRNA_H-elongata_contig533.12664.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig533.12664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig533contigH-elongata_contig533:19240..19723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size484
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig533.12664.1prot_H-elongata_contig533.12664.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig533 19301..19636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.1032557-UTR-H-elongata_contig533:19239..193001622930869.1032557-UTR-H-elongata_contig533:19239..19300Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig533 19240..19300 +
1691679604.8191025-UTR-H-elongata_contig533:19239..193001691679604.8191025-UTR-H-elongata_contig533:19239..19300Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig533 19240..19300 +
1622930869.1383688-UTR-H-elongata_contig533:19636..197231622930869.1383688-UTR-H-elongata_contig533:19636..19723Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig533 19637..19723 +
1691679604.8388283-UTR-H-elongata_contig533:19636..197231691679604.8388283-UTR-H-elongata_contig533:19636..19723Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig533 19637..19723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.120093-CDS-H-elongata_contig533:19300..196361622930869.120093-CDS-H-elongata_contig533:19300..19636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig533 19301..19636 +
1691679604.828676-CDS-H-elongata_contig533:19300..196361691679604.828676-CDS-H-elongata_contig533:19300..19636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig533 19301..19636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig533.12664.1

>prot_H-elongata_contig533.12664.1 ID=prot_H-elongata_contig533.12664.1|Name=mRNA_H-elongata_contig533.12664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MDEMSHLIQFTLGPSNFSYYHIVIRHPHCHVIPVNAARVLHRPSNYIASV
GPCWTNAFLYTLFTTATQISPVFHHLTLLEPSCSLPSPIPPLGSGYLRDT
MFTLRRRILRL*
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mRNA from alignment at H-elongata_contig533:19240..19723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig533.12664.1 ID=mRNA_H-elongata_contig533.12664.1|Name=mRNA_H-elongata_contig533.12664.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=484bp|location=Sequence derived from alignment at H-elongata_contig533:19240..19723+ (Himanthalia elongata Himel1 dioecious)
GGCTTACGTTGTCACCTGTTGGATATCTGTGCTGGGATATCGAGATATTT
GCCTCCATTGCATGGATGAGATGTCCCATCTAATTCAGTTTACTTTGGGT
CCCTCTAATTTCAGCTACTACCATATAGTCATACGTCACCCGCATTGCCA
TGTAATCCCTGTCAATGCTGCACGTGTCCTACATAGGCCATCAAACTATA
TAGCTTCGGTGGGTCCCTGTTGGACCAACGCTTTTCTGTATACCCTTTTT
ACTACTGCTACTCAAATCTCCCCCGTTTTCCATCATCTAACGCTTCTTGA
GCCCTCCTGTTCTCTTCCCTCCCCGATTCCACCCCTGGGCTCTGGGTATC
TGCGTGACACGATGTTCACGCTGAGGCGTCGGATCTTGCGGCTGTAGATG
CAGATTACCCGTTGGCGGCACTCCCTCTCTCGCGTGTTCCTCCCCACCTG
TACTACCCCTTGGAAAAAACGGGCTCTCTTTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig533:19240..19723+

>mRNA_H-elongata_contig533.12664.1 ID=mRNA_H-elongata_contig533.12664.1|Name=mRNA_H-elongata_contig533.12664.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig533:19240..19723+ (Himanthalia elongata Himel1 dioecious)
ATGGATGAGATGTCCCATCTAATTCAGTTTACTTTGGGTCCCTCTAATTT
CAGCTACTACCATATAGTCATACGTCACCCGCATTGCCATGTAATCCCTG
TCAATGCTGCACGTGTCCTACATAGGCCATCAAACTATATAGCTTCGGTG
GGTCCCTGTTGGACCAACGCTTTTCTGTATACCCTTTTTACTACTGCTAC
TCAAATCTCCCCCGTTTTCCATCATCTAACGCTTCTTGAGCCCTCCTGTT
CTCTTCCCTCCCCGATTCCACCCCTGGGCTCTGGGTATCTGCGTGACACG
ATGTTCACGCTGAGGCGTCGGATCTTGCGGCTGTAGATGGATGAGATGTC
CCATCTAATTCAGTTTACTTTGGGTCCCTCTAATTTCAGCTACTACCATA
TAGTCATACGTCACCCGCATTGCCATGTAATCCCTGTCAATGCTGCACGT
GTCCTACATAGGCCATCAAACTATATAGCTTCGGTGGGTCCCTGTTGGAC
CAACGCTTTTCTGTATACCCTTTTTACTACTGCTACTCAAATCTCCCCCG
TTTTCCATCATCTAACGCTTCTTGAGCCCTCCTGTTCTCTTCCCTCCCCG
ATTCCACCCCTGGGCTCTGGGTATCTGCGTGACACGATGTTCACGCTGAG
GCGTCGGATCTTGCGGCTGTAG
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