mRNA_H-elongata_contig5307.12632.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5307.12632.1
Unique NamemRNA_H-elongata_contig5307.12632.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A6H5LI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI88_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 1.210e-120
Identity = 189/254 (74.41%), Postives = 213/254 (83.86%), Query Frame = 1
Query:  112 QGVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRY---------------------PRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 810
            + VDNLFVFLMTFDYFQVPLEHQGRVL+WGI GAILMRGVMIAFGVA V+RFQWIT++FAAILLVSSYKLLVE++ E+ DLSQNTLVR+S+++VGAVDEYDGDRFFT++GGKGKTVATPL LCLVCIELSDFVFAVDSIPAVLG+S+ R+                      RDPFVVF+SNLFAIM LRSIYVIIAQAV+ LPYLKPAVALVLGFVGCKML+E+  ++I TG SL VV  +I GGV LSL AR
Sbjct:   50 RSVDNLFVFLMTFDYFQVPLEHQGRVLTWGIVGAILMRGVMIAFGVAAVKRFQWITVVFAAILLVSSYKLLVESEEEDHDLSQNTLVRMSRRLVGAVDEYDGDRFFTRLGGKGKTVATPLLLCLVCIELSDFVFAVDSIPAVLGISQARHIDLLPANFSWQMWLRMSHNTPSRDPFVVFTSNLFAIMGLRSIYVIIAQAVSQLPYLKPAVALVLGFVGCKMLLEYVHINISTGWSLFVVLSLILGGVGLSLLAR 303          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: D7G851_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G851_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 2.870e-120
Identity = 188/232 (81.03%), Postives = 209/232 (90.09%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 810
             VDNLFVFLMTFDYFQVPLEHQGRVL+WGI GAILMRGVMIAFGVA V+RFQWIT++FAAILLVSSYKLLVE++ E+ DLSQNTLVR+SK++VGAVDEYDGDRFFT++GGKGKTVATPL LCLVCIELSDFVFAVDSIPAVLG+S+     DPFVVF+SNLFAIM LRSIYVIIAQAV+ LPYLKPAVALVLGFVGCKML+E+  ++I TG SL VV  +I GGV LSL AR
Sbjct:  156 SVDNLFVFLMTFDYFQVPLEHQGRVLTWGIVGAILMRGVMIAFGVAAVKRFQWITVVFAAILLVSSYKLLVESEEEDHDLSQNTLVRMSKRLVGAVDEYDGDRFFTRLGGKGKTVATPLLLCLVCIELSDFVFAVDSIPAVLGISQ-----DPFVVFTSNLFAIMGLRSIYVIIAQAVSQLPYLKPAVALVLGFVGCKMLLEYVHINISTGWSLFVVLSLILGGVGLSLLAR 382          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7R9UD78_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD78_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.430e-91
Identity = 151/233 (64.81%), Postives = 189/233 (81.12%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAV-DEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 810
             VDNLFVFLM F YF+VPL HQGRVL+WGI GA+LMRG MIA GVA VQ F+W+ ++FAA+L+ SS K+L   + E+EDLS N ++++SKK++G V D YDG++FFT+ GG    VATPL LCLVCIE+SDFVFAVDSIPAVLGVS      DPF+V++SN+FAI+ALRS+Y ++A+AVN+LPYLK AVALVL F+G KM++EF GV IG GTSL VV L++ GGVVLS+ AR
Sbjct:  128 SVDNLFVFLMLFAYFKVPLLHQGRVLTWGIVGAVLMRGFMIAVGVAAVQHFRWMILVFAAVLVFSSVKML-SGEEEQEDLSDNYIIKMSKKLLGTVTDRYDGEKFFTEQGGA--KVATPLLLCLVCIEISDFVFAVDSIPAVLGVS-----HDPFIVYTSNIFAIIALRSLYTLVARAVNDLPYLKHAVALVLFFIGVKMVLEFFGVDIGIGTSLTVVLLLLVGGVVLSMIAR 352          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: W7THX1_9STRA (Integral membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7THX1_9STRA)

HSP 1 Score: 273 bits (699), Expect = 3.480e-87
Identity = 144/231 (62.34%), Postives = 178/231 (77.06%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSE--EEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
             VDN+FVF+M F+YF+VP+E+Q R LSWGI GA+ MRG+MI  GVA +QRF+W+ +LFA +LL S++KLL E   E  EEDLS N LV  +KK+V AVDEYDGD FFT+  GK    ATPLF+CL+CIELSDFVFAVDSIPAVLGVSK     DP +V+SSN+FAIMALRS+Y ++A AVN+L Y+KP+VALVL FVG KM+ EF  V +    SL VV  ++GGG+ LSL
Sbjct:  149 SVDNIFVFIMLFEYFKVPIEYQSRALSWGIMGAVAMRGIMIFVGVAAIQRFRWVVLLFAGVLLGSAFKLLAEVGHEGGEEDLSNNLLVAWAKKLVHAVDEYDGDNFFTRRNGK--RYATPLFMCLICIELSDFVFAVDSIPAVLGVSK-----DPLIVYSSNIFAIMALRSLYTLVATAVNSLEYIKPSVALVLAFVGGKMVAEFFHVEVPISVSLAVVMSLLGGGIGLSL 372          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S3XZU5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZU5_HETAK)

HSP 1 Score: 270 bits (691), Expect = 7.350e-86
Identity = 139/234 (59.40%), Postives = 184/234 (78.63%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCARTE 816
             VDNLFVF+M FDYF+VP++ Q RVL+WGI GA+ MR VMI  GVA +Q+F+ +T+LFA IL+ S YK++ E++ EEEDL  N +++LS KMV +  +YDG++FFTK+ G     ATPL +CL+CIELSDFVFAVDSIPAV+GV+K     DPF+V+SSNLFAI ALRS+Y ++A+AV++LPYLKPAVALVLGFVGCKM  E+    +G G SL VV +++GGG+V S+ A+ +
Sbjct:  141 SVDNLFVFIMLFDYFKVPMQFQSRVLTWGIIGAMSMRLVMIVLGVAAIQKFRSVTLLFAGILIFSGYKMINESE-EEEDLEDNVIMKLSNKMVKSTTQYDGEKFFTKIDGV--KYATPLLMCLICIELSDFVFAVDSIPAVIGVTK-----DPFIVYSSNLFAIAALRSLYTLVAKAVDDLPYLKPAVALVLGFVGCKMAAEYFHYEVGIGISLGVVGILLGGGIVASVIAKNK 366          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2RH37_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH37_9STRA)

HSP 1 Score: 266 bits (681), Expect = 2.780e-85
Identity = 143/229 (62.45%), Postives = 181/229 (79.04%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
             VDNLFVFLM F+YFQVPL +QGRVL+WGI GA++MRG+MI  GVA VQ+F+ + +LFAAIL++S+ KL  E+D E EDLS NT++RLSK  VGAV+EYDGD+FFT + G+ +  ATPL LCLVCIELSDFVFAVDSIPAV+GVS+     D  +V+SSN+FAIM LRS+Y ++A+AV +LPYL+PAVALVL F+G KM++EF    I    SL VV  ++  G+VLSL
Sbjct:   57 SVDNLFVFLMLFNYFQVPLSYQGRVLTWGIIGAVVMRGIMIVAGVAAVQKFRMVILLFAAILMLSAVKLFFESD-EPEDLSNNTVMRLSKFAVGAVEEYDGDKFFTILDGQRR--ATPLLLCLVCIELSDFVFAVDSIPAVIGVSQ-----DLLIVYSSNIFAIMGLRSLYTLVAKAVQDLPYLRPAVALVLAFIGLKMVMEFFHYEISISLSLGVVVTLLASGIVLSL 277          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S1UHU3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHU3_9STRA)

HSP 1 Score: 263 bits (671), Expect = 9.310e-84
Identity = 140/232 (60.34%), Postives = 179/232 (77.16%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEA---DSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
             VDNLFVF++ FDYF+VP   Q RVL+WGI GAI MRGVMI  GVA +QRF+ + +LFA +LLV++ +L+ E+   + EEEDLS N ++ +S+KMV AVD YD ++FFT   G  +  ATPL LCLVCIELSDFVFAVDSIPAVLGVSK     DPF+V++SN+FAI ALRS+YV++A+A++++PYLKPAV LVLGFVGCKML E+    + T  SL V+  I+GG +VLSL
Sbjct:   75 SVDNLFVFILLFDYFKVPAAFQSRVLNWGIIGAIAMRGVMIVLGVAAIQRFRVVMLLFAGLLLVAAGRLVKESFAVEEEEEDLSSNWIMNVSRKMVNAVDYYDDEKFFTMSNGIQR--ATPLLLCLVCIELSDFVFAVDSIPAVLGVSK-----DPFIVYTSNIFAIAALRSLYVLVAKAIDDMPYLKPAVGLVLGFVGCKMLGEYYHYEVSTAVSLAVIMGILGGSIVLSL 299          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2Y1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1S8_9STRA)

HSP 1 Score: 263 bits (672), Expect = 2.260e-83
Identity = 139/229 (60.70%), Postives = 176/229 (76.86%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
             VDNLFVFLM FDYF+VPL +Q R L+WGI GA+ MR VMI  GVA +Q+F+ + +LFA ILL SS+KL  E + +E DLS N ++++S KM  +VD YDG++FFTK+ G     ATPL +CLVCIELSDFVFAVDSIPAV+GV+K     DPF+V+SSN+FAIMALRS+YV++AQAV +LPYL+PAVALVL FVG KM+ EF    + T  SL VV  ++GGG+ LS+
Sbjct:  127 SVDNLFVFLMLFDYFKVPLAYQNRCLTWGIIGAMSMRLVMILLGVAAIQKFRVVILLFAGILLASSWKLFFEEEGDE-DLSDNVILKISNKMFKSVDHYDGEKFFTKVNGVRH--ATPLLMCLVCIELSDFVFAVDSIPAVIGVTK-----DPFIVYSSNMFAIMALRSLYVLVAQAVTDLPYLRPAVALVLAFVGAKMIAEFFHYELSTAISLAVVAAVLGGGIALSV 347          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2E636_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E636_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.400e-83
Identity = 144/229 (62.88%), Postives = 178/229 (77.73%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
             VDNLFVFLM F+YFQVPLE QGRVL+WGI GA+LMRGVMI  GVA +QRF+ + ++FAAILLVS+ KL  E+D E +DLSQN +++ SK   GAVDEYDG++F T +  + +  ATPL LCLVCIELSDFVFAVDSIPAV+GVS+     D  VV+SSNLFAIM LRS+Y ++A+AV +L YL+PAVALVL F+  KML+EF    I    SL+VV L++ GG+VLSL
Sbjct:   59 SVDNLFVFLMVFNYFQVPLECQGRVLTWGIIGAVLMRGVMITIGVAAIQRFRSVILIFAAILLVSAVKLFFESD-EPQDLSQNVVMKFSKFCTGAVDEYDGEKFITVVNNRRR--ATPLLLCLVCIELSDFVFAVDSIPAVIGVSQ-----DALVVYSSNLFAIMGLRSLYTLVAKAVEDLAYLRPAVALVLCFISIKMLLEFFHYEIPIHLSLLVVALLLAGGIVLSL 279          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A835ZA94_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA94_9STRA)

HSP 1 Score: 259 bits (663), Expect = 2.880e-83
Identity = 137/229 (59.83%), Postives = 175/229 (76.42%), Query Frame = 1
Query:  115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
             VDNLFVF+M F+YF+VP  +QGRVL+WGI GA+ MR VMI  GVA +QRF+ + + FAAILL SS KLL E + E+ DLS N ++R+SK  V + D+Y+G++FFT + GK   +ATPL LCLVCIELSDFVFAVDSIPAVLGVSK     D F+V+SSN+FAI+ALRS+Y +++ A+ +LPYLKP+VALVLGFVG KM  E+    IG G SL VV +++ GGV  S+
Sbjct:   35 SVDNLFVFIMLFEYFKVPAAYQGRVLTWGIIGAVSMRAVMIVVGVAAIQRFRGVILAFAAILLASSVKLLTEKEDEDGDLSNNIVLRISKFFVRSTDKYEGEKFFTVVDGK--KMATPLLLCLVCIELSDFVFAVDSIPAVLGVSK-----DTFIVYSSNVFAILALRSLYTLVSHAITDLPYLKPSVALVLGFVGLKMCAEYFHYEIGIGVSLSVVAVLLSGGVGASI 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LI88_9PHAE1.210e-12074.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G851_ECTSI2.870e-12081.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UD78_9STRA1.430e-9164.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7THX1_9STRA3.480e-8762.34Integral membrane protein TerC n=3 Tax=Monodopsida... [more]
A0A7S3XZU5_HETAK7.350e-8659.40Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2RH37_9STRA2.780e-8562.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UHU3_9STRA9.310e-8460.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2Y1S8_9STRA2.260e-8360.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2E636_9STRA2.400e-8362.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZA94_9STRA2.880e-8359.83Integral membrane protein TerC family-domain-conta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5307contigH-elongata_contig5307:1907..3662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue9.7e-96
Seed eggNOG ortholog2880.D7G851
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007275,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009791,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0055035,GO:0061024,GO:0071840,GO:0090351
EggNOG free text desc.membrane protein TERC
EggNOG OGs2QQNF@2759,COG0861@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size816
Cds size816
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5307.12632.1prot_H-elongata_contig5307.12632.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5307 1907..3662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.5989943-CDS-H-elongata_contig5307:1906..21581622930865.5989943-CDS-H-elongata_contig5307:1906..2158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5307 1907..2158 +
1691679603.5264728-CDS-H-elongata_contig5307:1906..21581691679603.5264728-CDS-H-elongata_contig5307:1906..2158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5307 1907..2158 +
1622930865.6198072-CDS-H-elongata_contig5307:2391..25131622930865.6198072-CDS-H-elongata_contig5307:2391..2513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5307 2392..2513 +
1691679603.537258-CDS-H-elongata_contig5307:2391..25131691679603.537258-CDS-H-elongata_contig5307:2391..2513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5307 2392..2513 +
1622930865.634747-CDS-H-elongata_contig5307:2786..29791622930865.634747-CDS-H-elongata_contig5307:2786..2979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5307 2787..2979 +
1691679603.5506945-CDS-H-elongata_contig5307:2786..29791691679603.5506945-CDS-H-elongata_contig5307:2786..2979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5307 2787..2979 +
1622930865.6469572-CDS-H-elongata_contig5307:3413..36621622930865.6469572-CDS-H-elongata_contig5307:3413..3662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5307 3414..3662 +
1691679603.5666208-CDS-H-elongata_contig5307:3413..36621691679603.5666208-CDS-H-elongata_contig5307:3413..3662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5307 3414..3662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5307.12632.1

>prot_H-elongata_contig5307.12632.1 ID=prot_H-elongata_contig5307.12632.1|Name=mRNA_H-elongata_contig5307.12632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp
VFVFVLSKYFLVALLLISDHATVNSAYSPRRCAVAIQQGVDNLFVFLMTF
DYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAIL
LVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKG
KTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLF
AIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGT
SLVVVTLIIGGGVVLSLCARTE
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mRNA from alignment at H-elongata_contig5307:1907..3662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5307.12632.1 ID=mRNA_H-elongata_contig5307.12632.1|Name=mRNA_H-elongata_contig5307.12632.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1756bp|location=Sequence derived from alignment at H-elongata_contig5307:1907..3662+ (Himanthalia elongata Himel1 dioecious)
GTGTTTGTTTTTGTTTTGTCAAAATATTTCCTCGTGGCACTTTTACTTAT ATCTGATCATGCGACTGTCAACTCGGCGTATTCACCCCGTCGTTGCGCCG TGGCCATTCAACAAGGCGTGGATAATCTCTTCGTCTTCCTCATGACGTTC GACTATTTCCAAGTACCCTTGGAGCACCAGGGGCGAGTGCTCTCGTGGGG TATCGCGGGCGCCATCCTCATGCGTGGCGTGATGATTGCGTTCGGCGTCG CGGTAAGTCCCCTCCCCTCTTCGCCTCCTCGGACGGTAACACCGCGCCGG TCGCGCGTGCGTCAAGTGGGTACGGATCGTCGAAATTTGTGCTTTGCTGT TTTTCTCTTCCTTTCCATCATGCCTCAAGGGAATCATTCCGTTTGTCGCA GGCGCACCACCACCCCACAGGGGTCAAAAATCATTTGCATCTCCGCCCCC GGCCCCATTTTGTTAACCTCGCGTAACGAGGGAAGGTGGTTCAAAGATTC CAGTGGATTACGATCTTGTTCGCGGCCATCCTCCTCGTGTCTTCCTACAA GCTCCTCGTGGAGGCGGATTCAGAAGAGGAGGACCTCAGCCAGAACACAC TCGTTAGGTAAAAATGGGCGCTTCCTTGCGGAGCACCCTCGTTAGGGACG AAACAGTGGACGATATTATTTGAAAGAGGCCCGTCCCGGAATACGCATTG TTGGCGTGATGAGCGGTTCAGTGTCATGGGGGCATCGCCGCAGAAATAGA GATTAATTATGTCTGCGATGCAGGATGTCGCAATGTCGCCCCTCTGGCCT GGCCTGGCCTCGATATGGGTATGGAAATGGGCTGCATGAGGACCACCTTA GGCCCGCGCCCAAACTGTAACCCCACGCAGGTTGTCGAAGAAGATGGTGG GAGCGGTGGACGAGTACGACGGCGATCGTTTCTTCACGAAGATGGGTGGG AAGGGGAAAACGGTGGCGACGCCGCTTTTCCTCTGCCTGGTGTGCATAGA GCTGTCGGACTTTGTGTTCGCGGTGGATTCTATTCCGGCCGTGCTCGGGG TCAGCAAGGTGAGGTATCCGCGTGTCCACCCGGCAAGATCTCCCCTCACC CACTTGGGTTAGACGCGGTACTCGTTGAACTCGACGACATGGTATTTTCG TAAGAGACTAGCGCTGGTAGAGAGTACGAGGGAGTTTAAGGCTGCTGACG AGGCGGGTTCCTTCTTTGTAGACCCTTGATGATCGAGTGATGCAATGCCG CAGCGTACCCGGGCTCCAATCTTTCGAGGGCTTGGATCGTTCGCGGTCCG CGCCCTTTAGCGTGACGGCCTCATGTCGCTGCCCGCGGGGCCTCGAGCCC ATTTCCGCTTTGTGTTTTGGCACCGCGCGGGAACTCGAGGGTCGCTCGCG TTTTTCGAACCTCGTGTATCCTCGCCTCGCTTTGCCTCGCTTTTTCCGTC ACCACCGTGGGTCCAATATCTCGCCTCCTCGTCCCAAACCGTCTGTCGCT TCTGCAGGACCCCTTCGTGGTGTTCTCTAGCAATCTGTTCGCCATTATGG CGCTGCGAAGCATTTACGTGATAATCGCGCAGGCGGTGAACAACCTTCCC TACCTCAAGCCAGCGGTGGCGCTCGTGCTGGGGTTCGTGGGGTGCAAGAT GCTCGTCGAGTTCGGCGGCGTCCACATCGGGACGGGCACCAGCCTGGTCG TTGTGACATTGATCATCGGAGGGGGCGTCGTTTTGAGCTTGTGCGCTCGA ACAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig5307:1907..3662+

>mRNA_H-elongata_contig5307.12632.1 ID=mRNA_H-elongata_contig5307.12632.1|Name=mRNA_H-elongata_contig5307.12632.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig5307:1907..3662+ (Himanthalia elongata Himel1 dioecious)
GTGTTTGTTTTTGTTTTGTCAAAATATTTCCTCGTGGCACTTTTACTTAT
ATCTGATCATGCGACTGTCAACTCGGCGTATTCACCCCGTCGTTGCGCCG
TGGCCATTCAACAAGGCGTGGATAATCTCTTCGTCTTCCTCATGACGTTC
GACTATTTCCAAGTACCCTTGGAGCACCAGGGGCGAGTGCTCTCGTGGGG
TATCGCGGGCGCCATCCTCATGCGTGGCGTGATGATTGCGTTCGGCGTCG
CGGTGTTTGTTTTTGTTTTGTCAAAATATTTCCTCGTGGCACTTTTACTT
ATATCTGATCATGCGACTGTCAACTCGGCGTATTCACCCCGTCGTTGCGC
CGTGGCCATTCAACAAGGCGTGGATAATCTCTTCGTCTTCCTCATGACGT
TCGACTATTTCCAAGTACCCTTGGAGCACCAGGGGCGAGTGCTCTCGTGG
GGTATCGCGGGCGCCATCCTCATGCGTGGCGTGATGATTGCGTTCGGCGT
CGCGGTGGTTCAAAGATTCCAGTGGATTACGATCTTGTTCGCGGCCATCC
TCCTCGTGTCTTCCTACAAGCTCCTCGTGGAGGCGGATTCAGAAGAGGAG
GACCTCAGCCAGAACACACTCGTTAGGTGGTTCAAAGATTCCAGTGGATT
ACGATCTTGTTCGCGGCCATCCTCCTCGTGTCTTCCTACAAGCTCCTCGT
GGAGGCGGATTCAGAAGAGGAGGACCTCAGCCAGAACACACTCGTTAGGT
TGTCGAAGAAGATGGTGGGAGCGGTGGACGAGTACGACGGCGATCGTTTC
TTCACGAAGATGGGTGGGAAGGGGAAAACGGTGGCGACGCCGCTTTTCCT
CTGCCTGGTGTGCATAGAGCTGTCGGACTTTGTGTTCGCGGTGGATTCTA
TTCCGGCCGTGCTCGGGGTCAGCAAGGTGAGGTATCCGCGTGTTGTCGAA
GAAGATGGTGGGAGCGGTGGACGAGTACGACGGCGATCGTTTCTTCACGA
AGATGGGTGGGAAGGGGAAAACGGTGGCGACGCCGCTTTTCCTCTGCCTG
GTGTGCATAGAGCTGTCGGACTTTGTGTTCGCGGTGGATTCTATTCCGGC
CGTGCTCGGGGTCAGCAAGGTGAGGTATCCGCGTGACCCCTTCGTGGTGT
TCTCTAGCAATCTGTTCGCCATTATGGCGCTGCGAAGCATTTACGTGATA
ATCGCGCAGGCGGTGAACAACCTTCCCTACCTCAAGCCAGCGGTGGCGCT
CGTGCTGGGGTTCGTGGGGTGCAAGATGCTCGTCGAGTTCGGCGGCGTCC
ACATCGGGACGGGCACCAGCCTGGTCGTTGTGACATTGATCATCGGAGGG
GGCGTCGTTTTGAGCTTGTGCGCTCGAACAGAGGACCCCTTCGTGGTGTT
CTCTAGCAATCTGTTCGCCATTATGGCGCTGCGAAGCATTTACGTGATAA
TCGCGCAGGCGGTGAACAACCTTCCCTACCTCAAGCCAGCGGTGGCGCTC
GTGCTGGGGTTCGTGGGGTGCAAGATGCTCGTCGAGTTCGGCGGCGTCCA
CATCGGGACGGGCACCAGCCTGGTCGTTGTGACATTGATCATCGGAGGGG
GCGTCGTTTTGAGCTTGTGCGCTCGAACAGAG
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