mRNA_H-elongata_contig5306.12631.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5306.12631.1
Unique NamemRNA_H-elongata_contig5306.12631.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5306.12631.1 vs. uniprot
Match: D7G5Y8_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G5Y8_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.140e-8
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   19 GDLEICSSSTQRFVFLAMPIVLAASLGGIYEAIWKHSEANSRKRHDHDDEAISRDKTGSDVKAPGVFSILNKITSY 246
             DL I  S T +F+F+ +PI+L A+LGG+YEA+WK  E  S +  +H D A + ++  S    PG+ +  + +  Y
Sbjct:   62 ADLYIKHSDTSKFIFIGLPIILTAALGGVYEALWKRREIRSTQ--EHPDSAAAGEEEDS---KPGILAFFHSVVHY 132
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BLAST of mRNA_H-elongata_contig5306.12631.1 vs. uniprot
Match: A0A6H5KG64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG64_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.890e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   22 DLEICSSSTQRFVFLAMPIVLAASLGGIYEAIWKHSEANS 141
            +L+I +S  Q F+FLA PI+LAA+LGG+YEA+W   EA +
Sbjct:   62 ELKIRTSRGQLFLFLASPIILAAALGGVYEALWLSREAKA 101
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BLAST of mRNA_H-elongata_contig5306.12631.1 vs. uniprot
Match: D7FK19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK19_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 7.080e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   22 DLEICSSSTQRFVFLAMPIVLAASLGGIYEAIWKHSEANS 141
            +L+I +S  Q F+FLA PI+LAA+LGG+YEA+W   EA +
Sbjct:   62 ELKIRTSRGQLFLFLASPIILAAALGGVYEALWLSREAKA 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5306.12631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5Y8_ECTSI1.140e-836.84Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KG64_9PHAE1.890e-555.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK19_ECTSI7.080e-555.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5306contigH-elongata_contig5306:9010..9255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6.7e-08
Seed eggNOG ortholog2880.D7G5M5
Preferred nameAIM14
KEGG koko:K00521
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006873,GO:0006875,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016175,GO:0016491,GO:0016651,GO:0016722,GO:0019725,GO:0030003,GO:0031090,GO:0031224,GO:0032956,GO:0032970,GO:0033043,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0048878,GO:0050664,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051493,GO:0055065,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0097038,GO:0098588,GO:0098771,GO:0098805,GO:0098852
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
EC1.16.1.7
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003170.1
Exons1
Model size248
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.5512435-CDS-H-elongata_contig5306:9009..92551622930865.5512435-CDS-H-elongata_contig5306:9009..9255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5306 9010..9255 +
1691679603.515389-CDS-H-elongata_contig5306:9009..92551691679603.515389-CDS-H-elongata_contig5306:9009..9255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5306 9010..9255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5306.12631.1prot_H-elongata_contig5306.12631.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5306 9010..9255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5306.12631.1

>prot_H-elongata_contig5306.12631.1 ID=prot_H-elongata_contig5306.12631.1|Name=mRNA_H-elongata_contig5306.12631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
FKFNLKGDLEICSSSTQRFVFLAMPIVLAASLGGIYEAIWKHSEANSRKR
HDHDDEAISRDKTGSDVKAPGVFSILNKITSY
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mRNA from alignment at H-elongata_contig5306:9010..9255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5306.12631.1 ID=mRNA_H-elongata_contig5306.12631.1|Name=mRNA_H-elongata_contig5306.12631.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig5306:9010..9255+ (Himanthalia elongata Himel1 dioecious)
TTCAAGTTCAATCTCAAGGGTGATCTCGAGATTTGTAGCTCTTCCACGCA
GCGGTTTGTGTTCCTTGCCATGCCCATCGTTCTGGCTGCATCCTTGGGCG
GCATTTATGAAGCCATCTGGAAGCACAGCGAGGCAAACTCACGCAAAAGA
CACGATCACGATGATGAGGCTATATCACGGGACAAGACTGGCAGCGACGT
CAAGGCACCCGGGGTGTTTTCAATTCTGAACAAAATTACAAGCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig5306:9010..9255+

>mRNA_H-elongata_contig5306.12631.1 ID=mRNA_H-elongata_contig5306.12631.1|Name=mRNA_H-elongata_contig5306.12631.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig5306:9010..9255+ (Himanthalia elongata Himel1 dioecious)
TTCAAGTTCAATCTCAAGGGTGATCTCGAGATTTGTAGCTCTTCCACGCA
GCGGTTTGTGTTCCTTGCCATGCCCATCGTTCTGGCTGCATCCTTGGGCG
GCATTTATGAAGCCATCTGGAAGCACAGCGAGGCAAACTCACGCAAAAGA
CACGATCACGATGATGAGGCTATATCACGGGACAAGACTGGCAGCGACGT
CAAGGCACCCGGGGTGTTTTCAATTCTGAACAAAATTACAAGCTACTTCA
AGTTCAATCTCAAGGGTGATCTCGAGATTTGTAGCTCTTCCACGCAGCGG
TTTGTGTTCCTTGCCATGCCCATCGTTCTGGCTGCATCCTTGGGCGGCAT
TTATGAAGCCATCTGGAAGCACAGCGAGGCAAACTCACGCAAAAGACACG
ATCACGATGATGAGGCTATATCACGGGACAAGACTGGCAGCGACGTCAAG
GCACCCGGGGTGTTTTCAATTCTGAACAAAATTACAAGCTAC
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