mRNA_H-elongata_contig53022.12629.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53022.12629.1
Unique NamemRNA_H-elongata_contig53022.12629.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53022.12629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53022contigH-elongata_contig53022:303..740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.4081156-CDS-H-elongata_contig53022:302..7401622930865.4081156-CDS-H-elongata_contig53022:302..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53022 303..740 +
1691679603.4647794-CDS-H-elongata_contig53022:302..7401691679603.4647794-CDS-H-elongata_contig53022:302..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53022 303..740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53022.12629.1prot_H-elongata_contig53022.12629.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53022 303..740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53022.12629.1

>prot_H-elongata_contig53022.12629.1 ID=prot_H-elongata_contig53022.12629.1|Name=mRNA_H-elongata_contig53022.12629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
CSGCTRCEGYIRFEGCIRCLGCICCEKCSRCGGCIRCHVYSRCSGCIRCE
GCTRCLGCSRCGGCIMCGGCSRFERYSRCDGCSPCTGCSRCSGCTRFEGC
IRFEGCSWCEESSRCGGCIICRAYSRCSGCVISRGYSRCNVFIRCE
back to top

mRNA from alignment at H-elongata_contig53022:303..740+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53022.12629.1 ID=mRNA_H-elongata_contig53022.12629.1|Name=mRNA_H-elongata_contig53022.12629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig53022:303..740+ (Himanthalia elongata Himel1 dioecious)
TGCAGTGGATGCACCCGATGCGAAGGATACATCAGGTTCGAGGGATGCAT
CCGATGCCTTGGATGCATCTGTTGCGAAAAATGTAGCAGATGCGGTGGAT
GCATCAGATGCCATGTATACAGTCGATGCAGTGGGTGTATCAGATGCGAG
GGATGCACCCGATGCCTTGGATGCAGCCGATGCGGCGGATGTATCATGTG
CGGTGGATGTAGCAGGTTCGAGAGATACAGCCGATGCGATGGCTGTAGCC
CATGTACTGGATGTAGCAGATGCAGTGGATGCACCCGATTCGAAGGATGT
ATCAGGTTCGAGGGATGCAGCTGGTGCGAAGAAAGTAGCAGATGTGGTGG
GTGCATCATATGCCGTGCATACAGCCGATGCAGTGGGTGCGTCATATCTC
GTGGATACAGTCGATGCAATGTGTTCATCAGATGCGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53022:303..740+

>mRNA_H-elongata_contig53022.12629.1 ID=mRNA_H-elongata_contig53022.12629.1|Name=mRNA_H-elongata_contig53022.12629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig53022:303..740+ (Himanthalia elongata Himel1 dioecious)
TGCAGTGGATGCACCCGATGCGAAGGATACATCAGGTTCGAGGGATGCAT
CCGATGCCTTGGATGCATCTGTTGCGAAAAATGTAGCAGATGCGGTGGAT
GCATCAGATGCCATGTATACAGTCGATGCAGTGGGTGTATCAGATGCGAG
GGATGCACCCGATGCCTTGGATGCAGCCGATGCGGCGGATGTATCATGTG
CGGTGGATGTAGCAGGTTCGAGAGATACAGCCGATGCGATGGCTGTAGCC
CATGTACTGGATGTAGCAGATGCAGTGGATGCACCCGATTCGAAGGATGT
ATCAGGTTCGAGGGATGCAGCTGGTGCGAAGAAAGTAGCAGATGTGGTGG
GTGCATCATATGCCGTGCATACAGCCGATGCAGTGGGTGCGTCATATCTC
GTGGATACAGTCGATGCAATGTGTTCATCAGATGCGAGTGCAGTGGATGC
ACCCGATGCGAAGGATACATCAGGTTCGAGGGATGCATCCGATGCCTTGG
ATGCATCTGTTGCGAAAAATGTAGCAGATGCGGTGGATGCATCAGATGCC
ATGTATACAGTCGATGCAGTGGGTGTATCAGATGCGAGGGATGCACCCGA
TGCCTTGGATGCAGCCGATGCGGCGGATGTATCATGTGCGGTGGATGTAG
CAGGTTCGAGAGATACAGCCGATGCGATGGCTGTAGCCCATGTACTGGAT
GTAGCAGATGCAGTGGATGCACCCGATTCGAAGGATGTATCAGGTTCGAG
GGATGCAGCTGGTGCGAAGAAAGTAGCAGATGTGGTGGGTGCATCATATG
CCGTGCATACAGCCGATGCAGTGGGTGCGTCATATCTCGTGGATACAGTC
GATGCAATGTGTTCATCAGATGCGAG
back to top