mRNA_H-elongata_contig52942.12619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52942.12619.1
Unique NamemRNA_H-elongata_contig52942.12619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52942.12619.1 vs. uniprot
Match: A0A2P6V7C3_9CHLO (HECT-type E3 ubiquitin transferase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V7C3_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 6.230e-10
Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 1 
Query:  154 ESSADLFERLKTEHPVPKRRYFSLLARVRAAVAWRGGLEARRAAVRGRIMALTALVYCHPSQDALIAYVSIQPELVQELVDLVRVRTDPLAQSTVPLDISVLAVHCLAALVHTRSGRSNLGLLARHTHVFQELGIARGQFTGLLPLLVRHGVASL 618
            ESS +L +RL  EH VP+ + ++LL ++    ++ G  EA++A +R R++A       +PS   ++A     P+LVQ+   L+R      A+  VP +I  LA+  LA           + LL R  H     GIA G+ +GLL LL+   VASL
Sbjct:  260 ESSHELLQRLVAEHGVPQDKRYALLHKINICKSF-GSAEAQQALLRRRLLAFYVAFQSNPSPTDILALFQATPDLVQQQAALLR------AEGEVPEEIQTLALRALA-----------VQLLDRSRHAAVLAGIAGGEQSGLLALLLHRSVASL 396
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BLAST of mRNA_H-elongata_contig52942.12619.1 vs. uniprot
Match: A0A1V9ZKE2_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKE2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.530e-9
Identity = 53/156 (33.97%), Postives = 75/156 (48.08%), Query Frame = 1 
Query:  157 SSADLFERLKTEHPVPKRRYFSLLARVRAAVAWRGGLEARRAAVRGRIMALTALVYCHPSQDALIAYVSIQPELVQELVDLVRVRTDPLAQSTVPLDISVLAVHCLAALVHTR--SGRSNLGLLARHTHVFQELGIARGQFTGLLPLLVRHGVASL 618
            S++ +  +L  +H VP++  F LL R+R++         R AAV  R+ AL  L Y     D +  ++   PELV E+V+L+R    P     VPL + V AVH L ALV       R    L    + V   LG+ RG   G    LVRH + +L
Sbjct:  254 SASAVLTQLVRQHNVPEKHQFKLLYRIRSSYG-AASRSTREAAVVERLHALLGLFYIFGDSDEVTTFMESNPELVGEVVELIRFDIHP----HVPLSVRVAAVHVLTALVSDGIVQSRGVRDLSRLQSSVLSALGVVRGMPHGAFLSLVRHTMGTL 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52942.12619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P6V7C3_9CHLO6.230e-1034.19HECT-type E3 ubiquitin transferase n=1 Tax=Micract... [more]
A0A1V9ZKE2_9STRA1.530e-933.97HECT-type E3 ubiquitin transferase n=1 Tax=Achlya ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52942contigH-elongata_contig52942:531..3544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue9.6e-14
Seed eggNOG ortholog2850.Phatr36043
KEGG koko:K10592,ko:K14772,ko:K17964,ko:K22370
KEGG Pathwayko04120,map04120
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03029,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size645
Cds size645
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52942.12619.1prot_H-elongata_contig52942.12619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52942 531..3544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.5132399-CDS-H-elongata_contig52942:530..6811622930864.5132399-CDS-H-elongata_contig52942:530..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52942 531..681 -
1691679603.0768974-CDS-H-elongata_contig52942:530..6811691679603.0768974-CDS-H-elongata_contig52942:530..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52942 531..681 -
1622930864.5339983-CDS-H-elongata_contig52942:1689..18431622930864.5339983-CDS-H-elongata_contig52942:1689..1843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52942 1690..1843 -
1691679603.088-CDS-H-elongata_contig52942:1689..18431691679603.088-CDS-H-elongata_contig52942:1689..1843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52942 1690..1843 -
1622930864.5525303-CDS-H-elongata_contig52942:2826..30731622930864.5525303-CDS-H-elongata_contig52942:2826..3073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52942 2827..3073 -
1691679603.0966873-CDS-H-elongata_contig52942:2826..30731691679603.0966873-CDS-H-elongata_contig52942:2826..3073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52942 2827..3073 -
1622930864.5695841-CDS-H-elongata_contig52942:3451..35441622930864.5695841-CDS-H-elongata_contig52942:3451..3544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52942 3452..3544 -
1691679603.1052372-CDS-H-elongata_contig52942:3451..35441691679603.1052372-CDS-H-elongata_contig52942:3451..3544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52942 3452..3544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52942.12619.1

>prot_H-elongata_contig52942.12619.1 ID=prot_H-elongata_contig52942.12619.1|Name=mRNA_H-elongata_contig52942.12619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
GSWGGGEGGAGQESNHPSPPGGYTGSRTIFVPATPAAGEDVDAVGASGSA
SESSADLFERLKTEHPVPKRRYFSLLARVRAAVAWRGGLEARRAAVRGRI
MALTALVYCHPSQDALIAYVSIQPELVQELVDLVRVRTDPLAQSTVPLDI
SVLAVHCLAALVHTRSGRSNLGLLARHTHVFQELGIARGQFTGLLPLLVR
HGVASLFLMPEQDVA
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mRNA from alignment at H-elongata_contig52942:531..3544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52942.12619.1 ID=mRNA_H-elongata_contig52942.12619.1|Name=mRNA_H-elongata_contig52942.12619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3014bp|location=Sequence derived from alignment at H-elongata_contig52942:531..3544- (Himanthalia elongata Himel1 dioecious)
GGATCGTGGGGAGGAGGAGAAGGAGGGGCTGGGCAGGAGAGCAACCACCC
ATCGCCTCCCGGCGGGTACACCGGATCGCGTACCATCTTTGTCGTGAGTG
GGTCGAGGCAGGCAATATCCTGGGCAGTTTTTCTTTTGCTACTGCTAGTA
CTAGTTCTTCATGACAACCGGTTCAAAGCTACCACAAAAATGCGCGGGGT
CTTCCTGATGCTGAAACTCCCCCATTACACGCCTCTCGCTTCCTTCCCTT
GTCTAACTCTGTACGCACACCCTCTCGCTGTTCTGGTGATTTTATTGCCC
TCGTATTTGCTCCCCGCATCTGTAACGCCTCCCTGGAATCCTTCTTTTTT
CGTCTTGATTCTCTTTCGGCGGCGTGCGCTCCTTCATTGGTCCGTCTGTC
GATTCCTACACCTTTTGCTCCCTCGGCTGCTGACCACGGTGGGCTGGATA
TCGGTGTGGCTGCCGGCACAGCCCGCCACGCCTGCCGCGGGGGAAGATGT
TGATGCCGTTGGTGCTTCTGGCTCGGCGAGTGAGTCATCGGCGGACTTGT
TCGAGCGCCTTAAGACGGAACATCCCGTACCAAAGCGGCGGTATTTCTCG
CTGCTGGCGCGGGTTCGTGCGGCGGTGGCTTGGAGGGGCGGGCTTGAGGC
CAGGCGGGCTGCCGTTCGTGGAAGGATCATGGCGTTGACTGCTCTAGTGT
ACTGCCATCCTTCGCAAGGTACTCTTTAAGGGTTGGGTGATGTCAGGAAG
GGATAGAGTAGTCGGTGCCAGGAAGCATTTCCGGGTGTGCAATTTCTCGC
GCATGTCGCACGCTAATGCCTTCCAATTTTATATTTAAAAAGCCTTGAAC
TGATTTCCAACCCTCCGAACATCCACAACTTCTTAGCACGATGAGTGGTA
AAAGTCTAGAGAGACCAACTATCGTCAGGTTCGAATGTGTATATTCCAGT
TTGACTCTAGCTGCTTGATACAGGTGTCGTCGGCGATTAAAAACGTTTAG
GTAGCCACCGTTAGTTGGTTTGTTTGGGTGCGATCGCGCGCACATCCCCT
GCGTAAAGAAGGCTATGGAAAACAAAAACAAAAATGTAATATTGTTCACA
TTCGAACCTAACAATGCCTGGCCATGGCTGGTCTCCTGGACTGACTCTGT
ACCTCTCACGGTTCAAAGGCTTGGAATGAGTTCAAGGTTTTTAAAGAAAA
ATATCTACCGAGCTGATTCGTTTTTATTTTTGACACTTGCTATCTCGCTA
CCTTGTCGTATCTTCTCTTGATGTCCGCAACACGCTTTTTGCCGTAGGTA
AGATAAGCGAGCGCAACACGCCTCCGAGAACTCCCGAAAGCCTTGTTTCC
TCCCCTGGTGTTTTTTTTCTCGACACGTATGTCGGCAGTAAAATAAAGGA
GGGGGGGTCGGAAAAAGATATCTCGAAGATAATTTCACAATGTGTGTGGT
GTGGTTTTGCTGGAGACTTGACGAAGGAAAGCTAAAAGGGTTGCAGCCCA
AAGAGGTCTCTTCGTCCAAAACCAAAGCTAAATTCAATATTTATTTATTT
CTATATACACTGTATTAGGTATATATACCATGTTATTTCAACAAATACAG
TATCTATTACCATTTTCTAGTCTTGTGTAAAACAAAGTTCCAGGCTTTTT
TTTTTCGTCGGTATGAGCTTACGTCCGCTTGTATGCTTTCATCCCACGCA
GATGCACTGATTGCGTACGTCAGCATCCAGCCTGAGCTGGTCCAGGAGCT
GGTGGACCTCGTGCGCGTTCGGACCGATCCTTTGGCGCAGTCGACAGTCC
CGCTGGACATCTCGGTGTTGGCTGTACATTGCCTGGCGGCGTTGGTGCAC
ACGAGGTTTGACACGTAGAAAATTCATCTATGGCGTGTTTTTACTTGAAA
AGGTGGGGCTGAAAAAGGAGGGGTGATCTGAGAGGTGATCTGATAGACTA
TCGGCGAGTACGGGATACGGTTAAATATGTCCCTATCCCTTGTGACGTTT
TTTACGTTGTGTTTTTATTGGCTCCAAATTTGATAATTATTAGAATTCAG
TATTCCCCGGAAGAGCTCCCATCCACTTCTAATCTAGTGTTTCCATGTAA
TGAAGGATGTAGAAGAATGGGGGGGGTAAGATGTTTTCTCGGGAAAAAAG
TATTTTAAGGGATGCCTCTCTTGGTTTGGTAGTTGTAACCATGACCTTGG
CTCCGTAAAGCAACCATAGCAACCATGGGTCATGGCTGTTGTTGCAATTA
GTTGATCGGGCCGTTGTGTTAACTCGGTAGCAGAGCCGTGGTCAACGCTG
TCTAGGCTTGTATACGGTGGCCGCTACACTCGAAGGTTGTTGTACGATGG
CCTGTCGCTTAACACTCTCGGCACAGTTAGTAGTAGTATTGTTATTATTA
TTGTTATTGCTATTATTATTATTATTTCTATTAGTAGTAGTAGTAGTATT
TGACCAGAAGACGGCTACAGGACTCCTGCCAAGGGTTGCTTGCGCACCTG
CTCTCCGTTTCAGACTATGACCACTGCAGAAATATATCGTAAGGAAACCG
CCCTAAACGAAGATTCCAACTCACGCCTAGCAGGGCTTACGTGGTTACTT
CCGAATTAGACTGCTCTGGCGGACTACTAGTGTACTACAGTAGCTCTATC
ATATATTATTATTATTTTTTTAAAAAAAGAATGTATTTTACTATTTTAAA
GTATTTTATTAAAAATATCAATATTACCAGAGCTGCTAGTATGTTATTAC
AGTACCAAAATGGTCACTGCTATTAACGCCAGTAATCACTCATTATTTGT
TTTCTTGCCCAAACGTCCGCTGGCCTTGGAACCTTGGAACCTATGGTATG
GCCAACTTGGAAGGAGCGGAAGGTCCAATCTGGGCCTCTTGGCTCGGCAT
ACGCACGTTTTCCAGGAGCTCGGGATCGCGCGTGGCCAGTTCACCGGCCT
GCTGCCCCTCCTTGTGCGTCACGGGGTAGCATCCCTCTTCCTGATGCCGG
AGCAGGATGTTGCT
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Coding sequence (CDS) from alignment at H-elongata_contig52942:531..3544-

>mRNA_H-elongata_contig52942.12619.1 ID=mRNA_H-elongata_contig52942.12619.1|Name=mRNA_H-elongata_contig52942.12619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig52942:531..3544- (Himanthalia elongata Himel1 dioecious)
GGATCGTGGGGAGGAGGAGAAGGAGGGGCTGGGCAGGAGAGCAACCACCC
ATCGCCTCCCGGCGGGTACACCGGATCGCGTACCATCTTTGTCGGATCGT
GGGGAGGAGGAGAAGGAGGGGCTGGGCAGGAGAGCAACCACCCATCGCCT
CCCGGCGGGTACACCGGATCGCGTACCATCTTTGTCCCCGCCACGCCTGC
CGCGGGGGAAGATGTTGATGCCGTTGGTGCTTCTGGCTCGGCGAGTGAGT
CATCGGCGGACTTGTTCGAGCGCCTTAAGACGGAACATCCCGTACCAAAG
CGGCGGTATTTCTCGCTGCTGGCGCGGGTTCGTGCGGCGGTGGCTTGGAG
GGGCGGGCTTGAGGCCAGGCGGGCTGCCGTTCGTGGAAGGATCATGGCGT
TGACTGCTCTAGTGTACTGCCATCCTTCGCAAGCCCGCCACGCCTGCCGC
GGGGGAAGATGTTGATGCCGTTGGTGCTTCTGGCTCGGCGAGTGAGTCAT
CGGCGGACTTGTTCGAGCGCCTTAAGACGGAACATCCCGTACCAAAGCGG
CGGTATTTCTCGCTGCTGGCGCGGGTTCGTGCGGCGGTGGCTTGGAGGGG
CGGGCTTGAGGCCAGGCGGGCTGCCGTTCGTGGAAGGATCATGGCGTTGA
CTGCTCTAGTGTACTGCCATCCTTCGCAAGATGCACTGATTGCGTACGTC
AGCATCCAGCCTGAGCTGGTCCAGGAGCTGGTGGACCTCGTGCGCGTTCG
GACCGATCCTTTGGCGCAGTCGACAGTCCCGCTGGACATCTCGGTGTTGG
CTGTACATTGCCTGGCGGCGTTGGTGCACACGAGATGCACTGATTGCGTA
CGTCAGCATCCAGCCTGAGCTGGTCCAGGAGCTGGTGGACCTCGTGCGCG
TTCGGACCGATCCTTTGGCGCAGTCGACAGTCCCGCTGGACATCTCGGTG
TTGGCTGTACATTGCCTGGCGGCGTTGGTGCACACGAGGAGCGGAAGGTC
CAATCTGGGCCTCTTGGCTCGGCATACGCACGTTTTCCAGGAGCTCGGGA
TCGCGCGTGGCCAGTTCACCGGCCTGCTGCCCCTCCTTGTGCGTCACGGG
GTAGCATCCCTCTTCCTGATGCCGGAGCAGGATGTTGCTGAGCGGAAGGT
CCAATCTGGGCCTCTTGGCTCGGCATACGCACGTTTTCCAGGAGCTCGGG
ATCGCGCGTGGCCAGTTCACCGGCCTGCTGCCCCTCCTTGTGCGTCACGG
GGTAGCATCCCTCTTCCTGATGCCGGAGCAGGATGTTGCT
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