mRNA_H-elongata_contig52924.12618.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52924.12618.1
Unique NamemRNA_H-elongata_contig52924.12618.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: D7FLL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.630e-22
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHPEDDLPALKQEDSVLGEDRAEGGXXXXXXXXEAA-VSLMLQNLKLPKGPPK 237
            C KCPT+YH+NCIPPDARYHELA++C  HPE +LPALKQEDS+LG  + EG XXXXXX  EAA V   L  LK PK PPK
Sbjct:  361 CIKCPTAYHLNCIPPDARYHELALICEAHPEAELPALKQEDSILGR-KGEGEXXXXXXAGEAAPVKFSLPTLKFPKHPPK 439
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: A0A7S2LN30_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LN30_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.690e-8
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHPEDDLPALKQEDSV 129
            C +CP S+HI CIPP AR+HELA+LC +H +  LP +  E+S+
Sbjct:  395 CLECPNSFHIGCIPPAARFHELALLCPEHRDSKLPYIDIENSM 437
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: A0A7S0XL04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XL04_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.240e-8
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHP-EDDLPALKQEDSV 129
            C  CPT+YHI CIPP+AR+HELA+LC +H     LP L   DS+
Sbjct:  162 CLYCPTAYHITCIPPNARFHELAVLCHEHSMTHKLPELDMNDSM 205
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: A0A7S2YEQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YEQ9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.470e-8
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHP-EDDLPALKQEDSVLG 135
            C +CP ++H+ CIPP AR+HELA+LC +H     LP L QE S+ G
Sbjct:   57 CMECPRAFHVPCIPPSARFHELALLCHEHAYSHKLPDLDQEASIQG 102
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: K0R273_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R273_THAOC)

HSP 1 Score: 54.7 bits (130), Expect = 8.110e-7
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHP-EDDLPALKQEDSV 129
            C  CP SYHI+CIPP AR+HELA+LC  H     LP L  E S+
Sbjct:   54 CLDCPISYHISCIPPSARFHELALLCHQHAYASKLPYLDVEHSM 97
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: A0A448Z2Q3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2Q3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.120e-6
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHPEDD-LPALKQEDSV 129
            C  CP S+HI CIPP A++HELA+LC +H     LP L   DS+
Sbjct:  273 CLYCPMSFHITCIPPTAKFHELAVLCHEHATTHKLPELDMNDSI 316
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: A0A067CDP7_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDP7_SAPPC)

HSP 1 Score: 53.1 bits (126), Expect = 2.920e-6
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHPEDDLP 105
            C KCPTSYH  CIPP ARY+ +A +CG H +D LP
Sbjct:  431 CLKCPTSYHPGCIPPSARYNNVATICGKH-KDPLP 464
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: T0S1X9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S1X9_SAPDV)

HSP 1 Score: 52.8 bits (125), Expect = 3.990e-6
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDH--PEDDLP 105
            C KCPTSYH  CIPP ARY+ +A +CG H  P  D+P
Sbjct:  433 CLKCPTSYHPGCIPPSARYNNVATICGKHEAPLPDVP 469
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: A0A7S4EMR8_9STRA (Hypothetical protein n=3 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMR8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.430e-6
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHPEDD-LPALKQEDSV 129
            C  CP ++HI CIPP A++HELA+LC +H     LP L   DS+
Sbjct:  265 CLYCPKAFHITCIPPTAKFHELAVLCHEHAATHKLPELDMNDSI 308
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BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Match: A0A7S1YN96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YN96_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.250e-6
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 CFKCPTSYHINCIPPDARYHELAMLCGDHPEDD-LPALKQEDS 126
            C  CP +YHI CIPP  R+HELA+LC +H     LP L  ++S
Sbjct:  278 CLDCPIAYHITCIPPSCRFHELALLCHEHSSSSKLPDLDVDNS 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52924.12618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FLL4_ECTSI1.630e-2268.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2LN30_9STRA2.690e-853.49Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0XL04_9STRA8.240e-856.82Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S2YEQ9_9STRA8.470e-852.17Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
K0R273_THAOC8.110e-756.82Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A448Z2Q3_9STRA2.120e-652.27Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A067CDP7_SAPPC2.920e-662.86Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0S1X9_SAPDV3.990e-659.46Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7S4EMR8_9STRA5.430e-650.00Hypothetical protein n=3 Tax=Pseudo-nitzschia aust... [more]
A0A7S1YN96_9STRA7.250e-651.16Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52924contigH-elongata_contig52924:2743..3310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D7FLL4
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K11424,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,ko05202,map00310,map04391,map05202
EggNOG free text desc.uterine gland development
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1083@2759
EC2.1.1.43,2.3.1.225
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.4345639-CDS-H-elongata_contig52924:2742..28351622930864.4345639-CDS-H-elongata_contig52924:2742..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52924 2743..2835 +
1691679603.0549774-CDS-H-elongata_contig52924:2742..28351691679603.0549774-CDS-H-elongata_contig52924:2742..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52924 2743..2835 +
1622930864.4576178-CDS-H-elongata_contig52924:3163..33101622930864.4576178-CDS-H-elongata_contig52924:3163..3310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52924 3164..3310 +
1691679603.0668478-CDS-H-elongata_contig52924:3163..33101691679603.0668478-CDS-H-elongata_contig52924:3163..3310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52924 3164..3310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52924.12618.1prot_H-elongata_contig52924.12618.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52924 2743..3310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52924.12618.1

>prot_H-elongata_contig52924.12618.1 ID=prot_H-elongata_contig52924.12618.1|Name=mRNA_H-elongata_contig52924.12618.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
CFKCPTSYHINCIPPDARYHELAMLCGDHPEDDLPALKQEDSVLGEDRAE
GGGGSGSGGGEAAVSLMLQNLKLPKGPPK*
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mRNA from alignment at H-elongata_contig52924:2743..3310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52924.12618.1 ID=mRNA_H-elongata_contig52924.12618.1|Name=mRNA_H-elongata_contig52924.12618.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=568bp|location=Sequence derived from alignment at H-elongata_contig52924:2743..3310+ (Himanthalia elongata Himel1 dioecious)
TGTTTCAAATGCCCGACCTCATACCACATCAACTGCATACCTCCCGACGC
TCGGTATCACGAGCTCGCCATGCTGTGCGGAGACCACCCTGAGGTGAGCG
AAGACCAAACGCTCCCGTGGCAGTCGGAGATGGTCGGAATTAGTGGGCCG
CTGCTGTTACCTCTTTCTGGCTGGTGCGCGCGTTGCATTGCGTTGCATTG
AGAGGAATATTTCCGGAACATCGGGTTGTGGAACACGCCGTGTGATTGTG
TTGACAGTAGGAGCTTCGGGGGGGGAATCATTTGAGAATGCGATGGTTTC
TACTTGTGTGCTGAGCGTGTGGCATACGATGTCGTGCACGAGGGGTTCCC
GTCGGGTTCGCACACACACACACACACACACGCACGGTAATCGCCGCTCC
TGCCGACCTCGGTTATATCAGGATGATCTTCCGGCGCTAAAGCAGGAGGA
CAGCGTGCTGGGAGAAGACCGGGCGGAGGGTGGAGGCGGAAGCGGAAGCG
GCGGGGGCGAGGCGGCGGTTTCGCTCATGCTGCAAAATCTCAAGCTGCCC
AAGGGGCCACCCAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig52924:2743..3310+

>mRNA_H-elongata_contig52924.12618.1 ID=mRNA_H-elongata_contig52924.12618.1|Name=mRNA_H-elongata_contig52924.12618.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig52924:2743..3310+ (Himanthalia elongata Himel1 dioecious)
TGTTTCAAATGCCCGACCTCATACCACATCAACTGCATACCTCCCGACGC
TCGGTATCACGAGCTCGCCATGCTGTGCGGAGACCACCCTGAGTGTTTCA
AATGCCCGACCTCATACCACATCAACTGCATACCTCCCGACGCTCGGTAT
CACGAGCTCGCCATGCTGTGCGGAGACCACCCTGAGGATGATCTTCCGGC
GCTAAAGCAGGAGGACAGCGTGCTGGGAGAAGACCGGGCGGAGGGTGGAG
GCGGAAGCGGAAGCGGCGGGGGCGAGGCGGCGGTTTCGCTCATGCTGCAA
AATCTCAAGCTGCCCAAGGGGCCACCCAAGTAGGATGATCTTCCGGCGCT
AAAGCAGGAGGACAGCGTGCTGGGAGAAGACCGGGCGGAGGGTGGAGGCG
GAAGCGGAAGCGGCGGGGGCGAGGCGGCGGTTTCGCTCATGCTGCAAAAT
CTCAAGCTGCCCAAGGGGCCACCCAAGTAG
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