mRNA_H-elongata_contig52890.12613.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52890.12613.1
Unique NamemRNA_H-elongata_contig52890.12613.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52890.12613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52890contigH-elongata_contig52890:1853..2731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size670
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52890.12613.1prot_H-elongata_contig52890.12613.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52890 2169..2731 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.0121164-UTR-H-elongata_contig52890:1852..21681622930864.0121164-UTR-H-elongata_contig52890:1852..2168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52890 1853..2168 +
1691679602.8628483-UTR-H-elongata_contig52890:1852..21681691679602.8628483-UTR-H-elongata_contig52890:1852..2168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52890 1853..2168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.0266864-CDS-H-elongata_contig52890:2168..22031622930864.0266864-CDS-H-elongata_contig52890:2168..2203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52890 2169..2203 +
1691679602.8739922-CDS-H-elongata_contig52890:2168..22031691679602.8739922-CDS-H-elongata_contig52890:2168..2203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52890 2169..2203 +
1622930864.038936-CDS-H-elongata_contig52890:2412..27311622930864.038936-CDS-H-elongata_contig52890:2412..2731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52890 2413..2731 +
1691679602.8822289-CDS-H-elongata_contig52890:2412..27311691679602.8822289-CDS-H-elongata_contig52890:2412..2731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52890 2413..2731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52890.12613.1

>prot_H-elongata_contig52890.12613.1 ID=prot_H-elongata_contig52890.12613.1|Name=mRNA_H-elongata_contig52890.12613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MPYIAFPPSTEPTSKNATGGLDENTRGVTCFSGVLGHTARSKYTGSGPSL
RPHDAEPTILISSRALKPYRYIVLAVVASLYSVATRQNKVERGVVSRVGG
RFQHGEAEEEEKTGKLQN
back to top

mRNA from alignment at H-elongata_contig52890:1853..2731+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52890.12613.1 ID=mRNA_H-elongata_contig52890.12613.1|Name=mRNA_H-elongata_contig52890.12613.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=879bp|location=Sequence derived from alignment at H-elongata_contig52890:1853..2731+ (Himanthalia elongata Himel1 dioecious)
GAGGTGTCAAGGGTGCAGGTGGATTAAACGTTGTGACTCAACGGGTCTCA
AAGGTAAACATTAGTAGCGACGATCATGACTAGATACACGATTGACAATC
CCATGCGAAGGAATGCACAAGCTGAGCTGGCTCCTGGAACACAAAACAGA
TTACGCCGCCCCAGCATCTGCCCGAATTTCGAGCGACACAAAACCTAAAA
AGGGTACACCTCGAAGGATTCTGGCTCCACTCTGAGCGTATTTGAAAACA
TCAGGTTGTGCGAAAAAAAACGAACGCGTTACAAAATCGGGAAACATCGC
CTTTGCCGACCTCCATATGCCATACATCGCTTTTCCTCCATCCACTGAAC
CGCGATCCCCACCTGCGCGTTGCTGGCTTCGAGCCTTGTCGTAGCTTAAA
TCGACCGACCTCTGTTTGTTATGACACCTGACACCTAAAATCACAAATGG
TATCCCCACCGACACATGCTTCTTATTCGACGCCTACTGCATGGCTTGTG
CAATGTCCTCGATGTCCTCCAGGCAAAGACTGTTTACCGTGGCTCGATGT
TGCTGTGGGGAACGAGCAAAAACGCCACCGGTGGATTAGACGAGAACACG
AGAGGCGTTACATGTTTTAGCGGCGTGCTGGGACACACCGCGCGCAGTAA
GTATACCGGTTCTGGACCTTCGTTGCGCCCACATGACGCGGAACCAACGA
TCTTGATTTCTTCACGTGCTCTAAAGCCCTATCGATATATTGTCCTTGCG
GTGGTTGCATCGCTTTATTCTGTAGCGACGCGCCAAAATAAGGTCGAGCG
TGGAGTTGTTTCGCGGGTCGGCGGTCGATTCCAACATGGGGAAGCAGAAG
AAGAAGAAAAAACGGGCAAGTTACAAAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52890:1853..2731+

>mRNA_H-elongata_contig52890.12613.1 ID=mRNA_H-elongata_contig52890.12613.1|Name=mRNA_H-elongata_contig52890.12613.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig52890:1853..2731+ (Himanthalia elongata Himel1 dioecious)
ATGCCATACATCGCTTTTCCTCCATCCACTGAACCATGCCATACATCGCT
TTTCCTCCATCCACTGAACCAACGAGCAAAAACGCCACCGGTGGATTAGA
CGAGAACACGAGAGGCGTTACATGTTTTAGCGGCGTGCTGGGACACACCG
CGCGCAGTAAGTATACCGGTTCTGGACCTTCGTTGCGCCCACATGACGCG
GAACCAACGATCTTGATTTCTTCACGTGCTCTAAAGCCCTATCGATATAT
TGTCCTTGCGGTGGTTGCATCGCTTTATTCTGTAGCGACGCGCCAAAATA
AGGTCGAGCGTGGAGTTGTTTCGCGGGTCGGCGGTCGATTCCAACATGGG
GAAGCAGAAGAAGAAGAAAAAACGGGCAAGTTACAAAACAACGAGCAAAA
ACGCCACCGGTGGATTAGACGAGAACACGAGAGGCGTTACATGTTTTAGC
GGCGTGCTGGGACACACCGCGCGCAGTAAGTATACCGGTTCTGGACCTTC
GTTGCGCCCACATGACGCGGAACCAACGATCTTGATTTCTTCACGTGCTC
TAAAGCCCTATCGATATATTGTCCTTGCGGTGGTTGCATCGCTTTATTCT
GTAGCGACGCGCCAAAATAAGGTCGAGCGTGGAGTTGTTTCGCGGGTCGG
CGGTCGATTCCAACATGGGGAAGCAGAAGAAGAAGAAAAAACGGGCAAGT
TACAAAAC
back to top