mRNA_H-elongata_contig52884.12611.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52884.12611.1
Unique NamemRNA_H-elongata_contig52884.12611.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: A0A6H5KK91_9PHAE (Abhydrolase_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK91_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 1.100e-105
Identity = 145/209 (69.38%), Postives = 177/209 (84.69%), Query Frame = 3
Query:    6 GVYKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFSASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIAATFQAIPGMGHSACEEELEEIGKFLRKILPE 632
            G Y NVVVWLHGLGDTA GW+  M  L + +TKFILPTAD RPI+LNGG +M GW+DI GL ED+ ED+ GF+AS DRVRA+LE EK+KGKE +RMVVGGFSQGGAVALH CLR TE +AGCVACS+W+PLNK+YP+ALGSAAKDIP+AQFHGTRD++V+FTWGQHSH L+K+KLG+  TF+AI GMGHS+   E+E +  FL+++LP+
Sbjct:   73 GAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDAVGFNASADRVRAILEAEKAKGKESTRMVVGGFSQGGAVALHFCLRATEPLAGCVACSTWIPLNKDYPTALGSAAKDIPVAQFHGTRDEVVQFTWGQHSHILMKEKLGMTTTFEAITGMGHSSSNAEMESVADFLKRVLPD 281          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: A0A6V1K3U7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K3U7_HETAK)

HSP 1 Score: 215 bits (547), Expect = 1.660e-64
Identity = 106/206 (51.46%), Postives = 141/206 (68.45%), Query Frame = 3
Query:   12 YKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFSASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKD-IPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIA-ATFQAIPGMGHSACEEELEEIGKFLRKI 623
            Y NVVVW HGLGDTA GW  +M A G+  TKFILPTA  RPI+LN GM M GW+DI GL ++  ED  GF  S  R+ +++  E  KG   S++VVGGFSQGGA+AL+  L+ T  IAGCV  SSW+PL+ ++P+A+  AA+  + I Q HG  D++VR  WG+ SH  +K +LG A A ++  PGM HSAC+EEL+   +FL+ +
Sbjct:   93 YTNVVVWNHGLGDTAMGWYSAMPAFGLTKTKFILPTAPTRPITLNMGMAMPGWSDIRGLDKEDDEDEPGFEESRARIESIVRSEVDKGISPSKIVVGGFSQGGALALYYSLQNTHGIAGCVGFSSWLPLSAKFPAAVSDAARGGLKILQCHGDADEVVRTAWGKLSHEKIKGELGFADAAWEEYPGMAHSACDEELQRCAEFLKGL 298          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: A0A7S2SSS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSS9_9STRA)

HSP 1 Score: 213 bits (542), Expect = 5.140e-64
Identity = 107/205 (52.20%), Postives = 141/205 (68.78%), Query Frame = 3
Query:    6 GVYKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFSASNDRVRALLELEKSKGK-ELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIA-ATFQAIPGMGHSACEEELEEIGKFL 614
            G +  VV+W+HGLGDTA GW  ++  L     K +LPTA+ RPI+LNGGM M GW DI GL   A ED+ G + S+ RVR ++E E  +G      +++GGFSQGGAVALHT LR   ++ GCVA S+W+PL +EYP ALGSAA+D+ +   HGT D +VR +WG+ SH  L + LGIA  +++   GM HSACE+ELE+I KFL
Sbjct:   66 GGHDGVVIWMHGLGDTAMGWYQALWGL-APRMKIVLPTAETRPITLNGGMSMPGWFDIVGLDSSAPEDAEGMAESSARVRRIMEKEMEEGGLGPEAVIIGGFSQGGAVALHTALRADVQLGGCVAASTWLPLREEYPGALGSAAQDLRVLFCHGTEDPVVRPSWGRGSHDFLIENLGIANVSWREYEGMPHSACEDELEDIRKFL 269          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: A0A836CN32_9STRA (Lysophospholipase-like protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN32_9STRA)

HSP 1 Score: 210 bits (535), Expect = 9.560e-64
Identity = 106/204 (51.96%), Postives = 133/204 (65.20%), Query Frame = 3
Query:   12 YKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFSASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAK-DIPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIAATFQAIPGMGHSACEEELEEIGKFLRK 620
            Y NVV+W+HGLGDTAD          V+   FILPTA  RPISLNGG  M GWTD+ GL E + ED  GF  S  R++AL++ EK+KG    R+VV GFSQGGA ALH  LR  + + GCVACS W+PL KEYP+ALG  AK  + + Q HG  D +VR  WG  S++ LK  +GIAA  +   GMGHSA  +ELE +  F+++
Sbjct:   25 YANVVIWMHGLGDTAD----------VSVLNFILPTAPTRPISLNGGFMMPGWTDVYGLDETSKEDKEGFEQSAARIQALIDSEKAKGIPAQRVVVAGFSQGGATALHVALRTKDALGGCVACSGWLPLAKEYPAALGDGAKAGLKVLQCHGDADVVVRHHWGSQSYNALK-AMGIAAELETYRGMGHSAIPDELERVSAFIQQ 217          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: A0A7S0SWW0_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWW0_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.450e-63
Identity = 100/204 (49.02%), Postives = 131/204 (64.22%), Query Frame = 3
Query:    6 GVYKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFSASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKDKL-GIAATFQAIPGMGHSACEEELEEIGKFL 614
            G Y  V+ W HGLGDTADGW+  +  L +  TK+ILPTA IRPI+LNGGM M GW+DI GL E + ED  GF+ S +RV+A++  E S G   S + +GGFSQGGA+ALH  LR   K+ GC+A SSW+P NK+YPS L  ++K +PI Q HG  D +V+F WG H+H  L + +     TF  IP  GH    +E   +  F+
Sbjct:    2 GEYNRVLFWFHGLGDTADGWADLVPELNLEKTKYILPTAPIRPITLNGGMSMPGWSDIYGLDETSKEDLAGFNESAERVQAIVNQEISSGISASNIFIGGFSQGGALALHYSLRSPLKLGGCIAFSSWLPFNKDYPSVLSDSSKTLPIVQVHGDNDYVVQFKWGSHTHKFLSEIITNPPPTFVKIPKHGHGFHPDETNILKSFI 205          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: C1E6T2_MICCC (Abhydrolase_2 domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6T2_MICCC)

HSP 1 Score: 186 bits (472), Expect = 2.970e-54
Identity = 92/210 (43.81%), Postives = 133/210 (63.33%), Query Frame = 3
Query:    3 GGVYKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFS-ASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIAAT-FQAIPGMGHSACEEELEEIGKFLRKIL 626
            GG    V ++LHGLGDT  GW+   S++     K+I PTA   PI+LNGGM+M GW DI  LS D ++D    + AS + V+ L++ E   G    R+VVGGFSQGG +AL T LRF E++AG V  S+++ L +++P A+   AKD+P+   HGT D ++++ +G  S  L+   LG+    FQ   GMGHSAC+EEL+++ KF+  +L
Sbjct:   16 GGATTAVCIFLHGLGDTGHGWADVASSMPFEGVKWIFPTAPTIPITLNGGMRMTGWYDINDLSIDNIKDDRAQTLASTEYVQGLIKAEIDGGVNADRIVVGGFSQGGVIALQTALRFPERLAGAVGMSTYLALREDFPDAMSPHAKDLPVFLAHGTADMVLQYQYGVMSSELMTGPLGMTKVDFQTYQGMGHSACQEELQQLAKFIANVL 225          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: A0A7S0KRY7_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KRY7_MICPS)

HSP 1 Score: 187 bits (476), Expect = 5.260e-54
Identity = 93/210 (44.29%), Postives = 133/210 (63.33%), Query Frame = 3
Query:    3 GGVYKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFS-ASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIAAT-FQAIPGMGHSACEEELEEIGKFLRKIL 626
            GG    V ++LHGLGDT  GWS   S++     K+I PTA   PI+LNGGM+M GW DI  LS D ++D    + AS + V+ L++ E  +G    R+VVGGFSQGG +AL T LRF E++AG V  S+++ L +++P A+   AKD+P+   HGT D ++++ +G  S  L+   LG+    FQ   GMGHSAC+EEL+ + KF+  +L
Sbjct:   82 GGATTAVCIFLHGLGDTGHGWSDVASSMPFEGVKWIFPTAPTIPITLNGGMRMTGWYDINDLSIDNIKDDRAQTLASTEYVQGLIKAEIDRGVAADRIVVGGFSQGGVIALQTALRFPERLAGAVGMSTYLALREDFPDAMSVHAKDLPVFLAHGTADAVLQYDYGVMSRELMTGGLGMTKVDFQTYQGMGHSACQEELQHLAKFIANVL 291          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: A0A4D9D0F4_9STRA (Abhydrolase_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0F4_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.350e-53
Identity = 88/207 (42.51%), Postives = 124/207 (59.90%), Query Frame = 3
Query:    3 GGVYKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFSASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIAATFQAIPGMGHSACEEELEEIGKFLRKI 623
            GG  ++ ++W+HGLGD+ +GW+G+        T+ I PTA  RPI+LNGG  M GW DI GL E + ED  GF  +  R+  +++ E   G    ++V+GGFSQGGAV LH  LR   ++ G V  S W+PL  +YP+AL    K +P    HG  D IVR  WGQHS   LK+ LG+  TF+   G+ H A  EE+++   F+++I
Sbjct:   69 GGPAQSSIIWMHGLGDSGEGWAGAFDPKVFPTTRMIFPTAPTRPITLNGGFPMPGWFDINGLDESSPEDRAGFEEAKQRIARIVQGEVEAGVPADKIVLGGFSQGGAVTLHLALRSEVRLGGAVILSGWLPLKADYPAALTEVGKAMPYFHGHGDADGIVRHQWGQHSAEKLKE-LGLNYTFKTYRGLDHGATPEEMKDAVAFMKEI 274          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: T1KU75_TETUR (Palmitoyl-protein hydrolase n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KU75_TETUR)

HSP 1 Score: 181 bits (460), Expect = 1.700e-52
Identity = 93/209 (44.50%), Postives = 128/209 (61.24%), Query Frame = 3
Query:    6 GVYKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFSASNDRVRALLELEKSKGK-ELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIAATFQAIPGMGHSACEEELEEIGKFLRKILP 629
            G Y   +++LHGLGDT  GWS S+ A+     K I PTA   PI+LNGGMKM  W D+  LS D  ED  G   +N  V  ++E E++K     +R+++GGFSQGGA+ALHT LR  + +AG +A S W+PL+KEYP+AL  A K +PI Q HG  D IV   WG  +  +L+  L     F+  PG+ HS+  EE+++   F+ + LP
Sbjct:   14 GKYTAAMIFLHGLGDTGQGWSDSIGAIIPPYCKLICPTAPSIPITLNGGMKMTSWFDLMALSADGPEDIEGIKKANSLVLKMIEEEEAKHSIPCNRILIGGFSQGGALALHTALRHPKSLAGVLAFSCWLPLHKEYPAALNQANKGVPIFQCHGDIDLIVPRIWGNKTADILRPLL-TTYNFKVYPGLAHSSSNEEMKDAAAFIARCLP 221          
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Match: UPI000E6E53E0 (acyl-protein thioesterase 1-like n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E53E0)

HSP 1 Score: 176 bits (445), Expect = 2.730e-50
Identity = 83/205 (40.49%), Postives = 129/205 (62.93%), Query Frame = 3
Query:   12 YKNVVVWLHGLGDTADGWSGSMSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFSASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCVACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKDKLGIAATFQAIPGMGHSACEEELEEIGKFLRKIL 626
            + + V++LHGLGDT +GW+ +MS +    TK ILPTA   P+++N G KM  W D+ GL+ +  ED TG +AS +++ +L++ E + G   +R+V+GGFSQGG +AL+  LR T+ + G VA S W+P+ + +P      + D+PI   HG  D +V + WGQ SH +L++ +     F   PG+ HS+ + EL +I  FL +IL
Sbjct:   15 HTSTVIFLHGLGDTGNGWAAAMSEIKPPHTKVILPTAPTIPVTINAGAKMPSWFDLHGLNPNTPEDETGLNASTEKIHSLIDKEVASGIPSNRIVLGGFSQGGGLALYAGLRCTKSLGGIVALSCWLPMFRNFPDPNLKCSPDVPIFMCHGDCDPVVPYKWGQASHKVLRNFMN-NCEFHTYPGLMHSSNQTELNDIKSFLDRIL 218          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52884.12611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK91_9PHAE1.100e-10569.38Abhydrolase_2 domain-containing protein n=2 Tax=Ec... [more]
A0A6V1K3U7_HETAK1.660e-6451.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SSS9_9STRA5.140e-6452.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CN32_9STRA9.560e-6451.96Lysophospholipase-like protein II n=1 Tax=Tribonem... [more]
A0A7S0SWW0_9STRA2.450e-6349.02Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
C1E6T2_MICCC2.970e-5443.81Abhydrolase_2 domain-containing protein n=1 Tax=Mi... [more]
A0A7S0KRY7_MICPS5.260e-5444.29Hypothetical protein n=2 Tax=Micromonas pusilla Ta... [more]
A0A4D9D0F4_9STRA1.350e-5342.51Abhydrolase_2 domain-containing protein n=2 Tax=Mo... [more]
T1KU75_TETUR1.700e-5244.50Palmitoyl-protein hydrolase n=1 Tax=Tetranychus ur... [more]
UPI000E6E53E02.730e-5040.49acyl-protein thioesterase 1-like n=1 Tax=Ctenoceph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52884contigH-elongata_contig52884:341..3168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue5.2e-72
Seed eggNOG ortholog2880.D7FSL3
KEGG rclassRC00037,RC00094
KEGG koko:K06130
KEGG ReactionR02747,R03417
KEGG Pathwayko00564,map00564
EggNOG free text desc.acyl-protein thioesterase
EggNOG OGsCOG0400@1,KOG2112@2759
EC3.1.1.5
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to lysophospholipase II
Ec32 orthologEc-04_000440.1
Exons6
Model size997
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52884.12611.1prot_H-elongata_contig52884.12611.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52884 415..2806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.7271402-UTR-H-elongata_contig52884:340..4141622930863.7271402-UTR-H-elongata_contig52884:340..414Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52884 341..414 +
1691679602.7215238-UTR-H-elongata_contig52884:340..4141691679602.7215238-UTR-H-elongata_contig52884:340..414Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52884 341..414 +
1622930863.858658-UTR-H-elongata_contig52884:2806..31681622930863.858658-UTR-H-elongata_contig52884:2806..3168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52884 2807..3168 +
1691679602.804314-UTR-H-elongata_contig52884:2806..31681691679602.804314-UTR-H-elongata_contig52884:2806..3168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52884 2807..3168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.7408967-CDS-H-elongata_contig52884:414..4701622930863.7408967-CDS-H-elongata_contig52884:414..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 415..470 +
1691679602.7344973-CDS-H-elongata_contig52884:414..4701691679602.7344973-CDS-H-elongata_contig52884:414..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 415..470 +
1622930863.761253-CDS-H-elongata_contig52884:628..7131622930863.761253-CDS-H-elongata_contig52884:628..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 629..713 +
1691679602.744788-CDS-H-elongata_contig52884:628..7131691679602.744788-CDS-H-elongata_contig52884:628..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 629..713 +
1622930863.7781658-CDS-H-elongata_contig52884:1012..11631622930863.7781658-CDS-H-elongata_contig52884:1012..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 1013..1163 +
1691679602.753464-CDS-H-elongata_contig52884:1012..11631691679602.753464-CDS-H-elongata_contig52884:1012..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 1013..1163 +
1622930863.7941308-CDS-H-elongata_contig52884:1793..19321622930863.7941308-CDS-H-elongata_contig52884:1793..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 1794..1932 +
1691679602.7623143-CDS-H-elongata_contig52884:1793..19321691679602.7623143-CDS-H-elongata_contig52884:1793..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 1794..1932 +
1622930863.8138316-CDS-H-elongata_contig52884:2261..23321622930863.8138316-CDS-H-elongata_contig52884:2261..2332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 2262..2332 +
1691679602.770916-CDS-H-elongata_contig52884:2261..23321691679602.770916-CDS-H-elongata_contig52884:2261..2332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 2262..2332 +
1622930863.8365722-CDS-H-elongata_contig52884:2747..28061622930863.8365722-CDS-H-elongata_contig52884:2747..2806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 2748..2806 +
1691679602.789-CDS-H-elongata_contig52884:2747..28061691679602.789-CDS-H-elongata_contig52884:2747..2806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52884 2748..2806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52884.12611.1

>prot_H-elongata_contig52884.12611.1 ID=prot_H-elongata_contig52884.12611.1|Name=mRNA_H-elongata_contig52884.12611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MSALGVADTKFILPTADIRPISLNGGMKMNGWTDITGLSEDAVEDSTGFS
ASNDRVRALLELEKSKGKELSRMVVGGFSQGGAVALHTCLRFTEKIAGCV
ACSSWVPLNKEYPSALGSAAKDIPIAQFHGTRDDIVRFTWGQHSHHLLKD
KLGIAATFQAIPGMGHSACEEELEEIGKFLRKILPE*
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mRNA from alignment at H-elongata_contig52884:341..3168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52884.12611.1 ID=mRNA_H-elongata_contig52884.12611.1|Name=mRNA_H-elongata_contig52884.12611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2828bp|location=Sequence derived from alignment at H-elongata_contig52884:341..3168+ (Himanthalia elongata Himel1 dioecious)
AGGGGGGTGTCTACAAGAACGTTGTGGTGTGGCTGCATGGCCTCGGCGAC ACGGCCGACGGCTGGTCTGGATCCATGTCGGCGCTTGGCGTGGCAGACAC GAAGTTTATTCTCCCGACGGCGGACATCAGGTGGGTACGGCATAACCGTG ACAACCGCTTGATCCGGGCTTGGAGTGTTTTGGATTTGCTTCGTATCCAC GGGGGGGGGGGCTGCCGGAACATGAACCACTCCCTACTGTCTCTTTCCGA CGATCGGCCGTGCTTTATTTTCTCCTCGACATGTTTAGACCTATCAGCCT CAACGGCGGGATGAAGATGAATGGGTGGACCGACATCACAGGGCTCTCCG AAGACGCTGTGGAGGACTCAACGGTTAGTCTACCATCCAAAAGAAGGAAT GCATGTTCGTTCCCACGCTCCGGGCGGGTGCCGCTTGAAGTTGGTCCAGC GCTCATGCTGGACCCGTTTCTTGGATGCATTTCGTCTTCGATCGATGTTG TGGTATGGTATGGTATGGTATGGTATGTATTCCGTTATCGTTGTCCATCG TCGATGTTTGTATGGGTGGATGTTTGGATCAACATACCCGTTATCGGTGC CAGTCCGTCGTCGACTTGCGCTCTTATGTGCCCGTTTTGATATATATATA TAAATGTATCGGTGCCTAATAGGGGTTCAGCGCAAGCAACGATCGCGTGC GTGCACTTCTGGAGCTGGAAAAGTCCAAGGGGAAGGAGCTTTCTAGGATG GTCGTTGGTGGATTTTCGCAAGGGGGCGCCGTCGCGCTGCACACATGTCT TCGTTTTACCGAGAAGATAGCAGGTATCGTTGGAGGTGGAGATAGATCAT ATTACTATCACTATACTTTCCTCTCCTTCGAGCCTTGTTGCTCATTTCGT TCCTTGGTTTCAGACACCAAGGTTTCGGAGGGTATTTTTGGAGCCATCCC GGTTGGATGGCTCCTGGGAGAAACATGGGGTTTCATTTTTATACTTGATT CCAAAGGAGAATGTTTCTCTTTTAAACCATACGAACACCGAATATCCACA CCACTATGAGAGGTCTCGCGACGACTTGAGCGTCTCATAGTAGAGCGTCT CTTAGGGAGCGCCTATTTACACCCCATGGGTTTTTTACGTCAAACCACCA CCCAACTATAGTCAGCAAAATATGGTGATCATATGTGAAGTAAAACAGCG GTCTCCTTGAAACCTATATATGGTGGACCCAAGCCCACACCGAAGCATAC ATGGGGTGTAAATAGGGTACTGATTATCGATAATTATATATGAGTGGTGG TTCGACGTAAAAACCATGGGGTGTAAATAGGCACTCCCCGTCTCTTAGTA GAGCGTCTCTTACTATTAATAACAGTAGATTATATTTCCTTTGTTGAGGT TCGAGTAAATTTATAGGCAAGTTACTATTAAATATGTGCATCGCTCCCGA CAGGATGCGTTGCGTGCAGCTCGTGGGTACCTTTGAACAAGGAATACCCT AGCGCGCTCGGCAGCGCCGCGAAGGACATCCCGATTGCGCAGTTCCATGG AACAAGGGATGACATCGTGCGGTTCACCTGGGGCCAACATAGGTGAGTGT GCGCTCAAGTCGTGCGCATGGGTGGCGTTCTAATCCGTTCGATCGATGAC GCGGATGCCTGCGCAAGGTGCCTTGTGCCTTCGTCTCGGCATCTCGCTCC ACGGTTTTCACTATGCCCGACAGGCGTTATTTGAGGGGTCTGAATACTGG CTCCTCCCCTGGGGCCGCACAACACGCTGAAGTGCTGAAAGATGTTGGCG CTGATGACTGAGTTGCTGGATGACGTAGCCTGCGTTCGCCTGCTCTTTGA TTACGATTCCTTGTTTTGAATGAATACTCCCCACGGATGCACCGAACTCC CGCGATAACTCTGGGAGTTAGTCACCATCTTCTTAAGGACAAGCTCGGCA TTGCGGCAACGTTTCAGGCTATCCCGGGCATGGGCCACTCCGGTAAGACT CTCTACGGCAAAGGACATTTGACCCACCACGCGTCCATCTCCCGTTCGAG CGCTTTGGGTGAAACGGAGCGTTGTTAGGCGCCGGTTCTCGTATGAAGTC GTAATGTGGTGGATTACCGGATTCGATGCCGATAATCGCGTTGTCTTGTG GAACCTAACTCCGGAAGATTGTATGTTGAACTACAGTACGTTAGGCAACC GAAGAAGTTCGCTTGAAGGGTTCTCGACAGCCCTCGCTGCTTGTATGCCA AGTCTTGCGGTTGACGTAAAGCCTACTATATGCATGGTCGCACATCTACA CGACCAGCAAGTCTTGCCGTTGACCTCTCACCTGCTTCCTTGCGCAACCC TTAAAACCGACGTTCGTCTTACTGAAAAATTGGAAAATTAAATCGCTTCG ACGTCAGCTTGCGAGGAGGAGCTGGAGGAAATCGGAAAATTCTTGAGGAA AATTCTTCCAGAGTAAAAGGACAATGGCAGGCCCTGGGCCCGACCACCGT TGCGGTGCCTAGCTTTGTTAAGGCCTATCTCATACGCACATCATGCTGAG AATCTGGACCGCTCGCCGTCTTGCAGAGTACTCAAGAGTACTTGATTTGG ATGCCTATTCTAAGGTGTACAATAGTGCACAATAGTGGAGGTCGCGCCGC ATTGTTTCGAATCGCGCTCATGTTTTGTTCAATTTTTATGCCGGTGACGT GCGATGTGCGACTGATTTATGTGAAGGATCGTATTATTTTTTGACTGCTC GATCGATTGATTGATTGGTTGGTTGAATTCTCACATGATATGATGTCGAA ATCCAGCCCGTGGTCACAAGGTAGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig52884:341..3168+

>mRNA_H-elongata_contig52884.12611.1 ID=mRNA_H-elongata_contig52884.12611.1|Name=mRNA_H-elongata_contig52884.12611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig52884:341..3168+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGCGCTTGGCGTGGCAGACACGAAGTTTATTCTCCCGACGGCGGA
CATCAGATGTCGGCGCTTGGCGTGGCAGACACGAAGTTTATTCTCCCGAC
GGCGGACATCAGACCTATCAGCCTCAACGGCGGGATGAAGATGAATGGGT
GGACCGACATCACAGGGCTCTCCGAAGACGCTGTGGAGGACTCAACGACC
TATCAGCCTCAACGGCGGGATGAAGATGAATGGGTGGACCGACATCACAG
GGCTCTCCGAAGACGCTGTGGAGGACTCAACGGGGTTCAGCGCAAGCAAC
GATCGCGTGCGTGCACTTCTGGAGCTGGAAAAGTCCAAGGGGAAGGAGCT
TTCTAGGATGGTCGTTGGTGGATTTTCGCAAGGGGGCGCCGTCGCGCTGC
ACACATGTCTTCGTTTTACCGAGAAGATAGCAGGGGTTCAGCGCAAGCAA
CGATCGCGTGCGTGCACTTCTGGAGCTGGAAAAGTCCAAGGGGAAGGAGC
TTTCTAGGATGGTCGTTGGTGGATTTTCGCAAGGGGGCGCCGTCGCGCTG
CACACATGTCTTCGTTTTACCGAGAAGATAGCAGGATGCGTTGCGTGCAG
CTCGTGGGTACCTTTGAACAAGGAATACCCTAGCGCGCTCGGCAGCGCCG
CGAAGGACATCCCGATTGCGCAGTTCCATGGAACAAGGGATGACATCGTG
CGGTTCACCTGGGGCCAACATAGGATGCGTTGCGTGCAGCTCGTGGGTAC
CTTTGAACAAGGAATACCCTAGCGCGCTCGGCAGCGCCGCGAAGGACATC
CCGATTGCGCAGTTCCATGGAACAAGGGATGACATCGTGCGGTTCACCTG
GGGCCAACATAGTCACCATCTTCTTAAGGACAAGCTCGGCATTGCGGCAA
CGTTTCAGGCTATCCCGGGCATGGGCCACTCCGTCACCATCTTCTTAAGG
ACAAGCTCGGCATTGCGGCAACGTTTCAGGCTATCCCGGGCATGGGCCAC
TCCGCTTGCGAGGAGGAGCTGGAGGAAATCGGAAAATTCTTGAGGAAAAT
TCTTCCAGAGTAACTTGCGAGGAGGAGCTGGAGGAAATCGGAAAATTCTT
GAGGAAAATTCTTCCAGAGTAA
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