mRNA_H-elongata_contig5288.12610.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5288.12610.1
Unique NamemRNA_H-elongata_contig5288.12610.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5288.12610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5288contigH-elongata_contig5288:3902..4555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size590
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5288.12610.1prot_H-elongata_contig5288.12610.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5288 4113..4533 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.6327758-UTR-H-elongata_contig5288:3901..41121622930863.6327758-UTR-H-elongata_contig5288:3901..4112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5288 3902..4112 +
1691679602.6626763-UTR-H-elongata_contig5288:3901..41121691679602.6626763-UTR-H-elongata_contig5288:3901..4112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5288 3902..4112 +
1622930863.6756399-UTR-H-elongata_contig5288:4533..45551622930863.6756399-UTR-H-elongata_contig5288:4533..4555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5288 4534..4555 +
1691679602.7074523-UTR-H-elongata_contig5288:4533..45551691679602.7074523-UTR-H-elongata_contig5288:4533..4555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5288 4534..4555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.6466706-CDS-H-elongata_contig5288:4112..43171622930863.6466706-CDS-H-elongata_contig5288:4112..4317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5288 4113..4317 +
1691679602.672731-CDS-H-elongata_contig5288:4112..43171691679602.672731-CDS-H-elongata_contig5288:4112..4317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5288 4113..4317 +
1622930863.6615431-CDS-H-elongata_contig5288:4381..45331622930863.6615431-CDS-H-elongata_contig5288:4381..4533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5288 4382..4533 +
1691679602.690241-CDS-H-elongata_contig5288:4381..45331691679602.690241-CDS-H-elongata_contig5288:4381..4533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5288 4382..4533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5288.12610.1

>prot_H-elongata_contig5288.12610.1 ID=prot_H-elongata_contig5288.12610.1|Name=mRNA_H-elongata_contig5288.12610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MGCGQSCYHAEGDDPSVARLHSLCDSHLLHHPIHHVLCLLRKYAADIQSP
RSSRNSGVEAGYHAPLVEGGSTGPTSVAYHPSGSPPCAGTAPVDPASCTC
APPVGAAAPECAVVGQEE*
back to top

mRNA from alignment at H-elongata_contig5288:3902..4555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5288.12610.1 ID=mRNA_H-elongata_contig5288.12610.1|Name=mRNA_H-elongata_contig5288.12610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig5288:3902..4555+ (Himanthalia elongata Himel1 dioecious)
CCTGAACTTTGGAATTGACCTCGTACGCGCTTATCATGGCACACGTATCG
GGAATGATCCGCATCAGGAGGGCTACCCGGAGGGGCGTGAGTCCGTCCCT
ACGTGGAGACGCCGGCTTTCCGGCTAATACCTGTGGTTGGTTTCCCGGCA
ACGCCCACCCTGCGGAGCGGGCAAACAGCTTGGCCAGGCTGTCTTCGAGG
TGGACCGGTTCATGGGTTGTGGTCAGTCTTGCTACCACGCCGAGGGAGAT
GATCCCAGTGTAGCCCGTCTTCATAGCCTCTGTGACTCTCATCTCCTTCA
CCATCCGATCCACCACGTGCTGTGCCTTCTTCGAAAATACGCCGCTGATA
TCCAATCCCCCCGCTCCTCCCGGAACTCCGGGGTTGAGGCCGGGTACCAC
GCCCCCTTGGTCGAAGGCTCGATAGGTTACCGAGGGCGGGTCGCAGTGCC
CAGGGCTAGTTGTGAACGCTGAAGGTATAGGTGGGTCTACCGGCCCTACC
TCCGTTGCGTACCATCCCTCGGGGTCCCCCCCTTGCGCCGGGACCGCTCC
TGTGGATCCTGCGTCTTGCACCTGTGCCCCCCCTGTTGGAGCTGCCGCCC
CGGAATGTGCCGTTGTAGGCCAAGAGGAGTAAGGCGGCGCTATCTGGTTG
GCGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5288:3902..4555+

>mRNA_H-elongata_contig5288.12610.1 ID=mRNA_H-elongata_contig5288.12610.1|Name=mRNA_H-elongata_contig5288.12610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig5288:3902..4555+ (Himanthalia elongata Himel1 dioecious)
ATGGGTTGTGGTCAGTCTTGCTACCACGCCGAGGGAGATGATCCCAGTGT
AGCCCGTCTTCATAGCCTCTGTGACTCTCATCTCCTTCACCATCCGATCC
ACCACGTGCTGTGCCTTCTTCGAAAATACGCCGCTGATATCCAATCCCCC
CGCTCCTCCCGGAACTCCGGGGTTGAGGCCGGGTACCACGCCCCCTTGGT
CGAAGATGGGTTGTGGTCAGTCTTGCTACCACGCCGAGGGAGATGATCCC
AGTGTAGCCCGTCTTCATAGCCTCTGTGACTCTCATCTCCTTCACCATCC
GATCCACCACGTGCTGTGCCTTCTTCGAAAATACGCCGCTGATATCCAAT
CCCCCCGCTCCTCCCGGAACTCCGGGGTTGAGGCCGGGTACCACGCCCCC
TTGGTCGAAGGTGGGTCTACCGGCCCTACCTCCGTTGCGTACCATCCCTC
GGGGTCCCCCCCTTGCGCCGGGACCGCTCCTGTGGATCCTGCGTCTTGCA
CCTGTGCCCCCCCTGTTGGAGCTGCCGCCCCGGAATGTGCCGTTGTAGGC
CAAGAGGAGTAAGTGGGTCTACCGGCCCTACCTCCGTTGCGTACCATCCC
TCGGGGTCCCCCCCTTGCGCCGGGACCGCTCCTGTGGATCCTGCGTCTTG
CACCTGTGCCCCCCCTGTTGGAGCTGCCGCCCCGGAATGTGCCGTTGTAG
GCCAAGAGGAGTAA
back to top