mRNA_H-elongata_contig52872.12609.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52872.12609.1
Unique NamemRNA_H-elongata_contig52872.12609.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52872.12609.1 vs. uniprot
Match: D7G2A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2A1_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 5.720e-54
Identity = 172/429 (40.09%), Postives = 205/429 (47.79%), Query Frame = 1 
Query:    1 WHDELWATVEKRIMEDLLE-----------IESRLAGAEGSGRATSDS---DSKRASALESQERALSNEQWNKARAVATTSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPVACQESPIEVDFFCHHQQQQQKGWTKNSPKPKGRES----SVG---GAGRTEAGGVHVMVTIPSTFDIYLRDGQVKKGASAGSGG---------------RNGGAGDLGXXXXXXXXGSNKKNSGD--ATTDVSVALHLVRVRAVVEEEICVVGLDKRSPPEASFPALSSMADSRSDGTSSSQSTFAGSPAVSVDRGAGRIPSNVNQGLSEGRHANPGRKASDGSSSETSETPAPAFP---------------------------------ALTRTERRMRVTLVPEPSVVGEMVRNFSRTFGVEVSDPEPPRVLG 1074
            WH+ELWAT+E R+ME +L                    + +GR ++D        A A+  + RAL+ E+WNKARAVATTSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPV CQESPI V+F        +          +GR S    S G   GAG+ +   VHV+VT+PSTFDIYLRDG     A  G+ G               R        X        S+  ++GD  A  D S ALHLVRV+AVVEEEI   GL +     +         +   DGT                      P  +   L   RH    R+ S GS       PA A                                   ALTRTERRM VT+VPEPS V EMVR+FSR  GV+V  P+PPRVLG
Sbjct:  255 WHEELWATLEARVMESVLSGXXXXXXXXXXXXXXXXXXKSNGRGSTDEAVGGRGAAPAVGDKARALALEEWNKARAVATTSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPVHCQESPITVEFL------NRSSAAAGGKGARGRRSKERLSFGKKKGAGKGKGDDVHVLVTVPSTFDIYLRDGGT---AGEGADGXXXXXXXXXXXXXXXRXXXXXXXXXKIHRKSSTSSNHSNGDGAAAADASNALHLVRVKAVVEEEIW--GLGRAGGGMSXXXXXXXXXE---DGT----------------------PPTLRFLLDPERH---NRRTSAGSGGWPDAPPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLALTRTERRMAVTVVPEPSAVSEMVRSFSRKIGVDVPSPQPPRVLG 644
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52872.12609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2A1_ECTSI5.720e-5440.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52872contigH-elongata_contig52872:2390..3469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1080
Cds size1080
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.5378282-CDS-H-elongata_contig52872:2389..34691622930863.5378282-CDS-H-elongata_contig52872:2389..3469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52872 2390..3469 -
1691679602.6532838-CDS-H-elongata_contig52872:2389..34691691679602.6532838-CDS-H-elongata_contig52872:2389..3469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52872 2390..3469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52872.12609.1prot_H-elongata_contig52872.12609.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52872 2390..3469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52872.12609.1

>prot_H-elongata_contig52872.12609.1 ID=prot_H-elongata_contig52872.12609.1|Name=mRNA_H-elongata_contig52872.12609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=360bp
WHDELWATVEKRIMEDLLEIESRLAGAEGSGRATSDSDSKRASALESQER
ALSNEQWNKARAVATTSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPV
ACQESPIEVDFFCHHQQQQQKGWTKNSPKPKGRESSVGGAGRTEAGGVHV
MVTIPSTFDIYLRDGQVKKGASAGSGGRNGGAGDLGRGGSGKGGGSNKKN
SGDATTDVSVALHLVRVRAVVEEEICVVGLDKRSPPEASFPALSSMADSR
SDGTSSSQSTFAGSPAVSVDRGAGRIPSNVNQGLSEGRHANPGRKASDGS
SSETSETPAPAFPALTRTERRMRVTLVPEPSVVGEMVRNFSRTFGVEVSD
PEPPRVLGS*
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mRNA from alignment at H-elongata_contig52872:2390..3469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52872.12609.1 ID=mRNA_H-elongata_contig52872.12609.1|Name=mRNA_H-elongata_contig52872.12609.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1080bp|location=Sequence derived from alignment at H-elongata_contig52872:2390..3469- (Himanthalia elongata Himel1 dioecious)
TGGCACGACGAACTGTGGGCGACGGTGGAGAAGCGCATCATGGAAGACCT
TCTGGAAATCGAGTCCCGTTTGGCGGGGGCAGAGGGCAGCGGCAGGGCCA
CGAGCGATTCCGATTCAAAAAGGGCGAGCGCCTTAGAGTCACAAGAAAGA
GCTCTATCGAACGAACAGTGGAACAAGGCTCGCGCCGTCGCGACGACGAG
CGAGGTGTTTAAGGCCATGTCGCGGACGGGGGCAGGGGGCGACGCCTACT
TCGCCCTGGTGGCGCTCTTCTGTACCGCGGACAAGCTGGTGGTGCCGGTG
GCGTGTCAGGAGTCTCCCATCGAGGTGGACTTCTTCTGCCATCACCAACA
GCAGCAGCAGAAGGGGTGGACGAAGAATTCACCCAAACCGAAGGGGAGAG
AGTCGTCGGTCGGAGGGGCTGGAAGGACCGAGGCGGGGGGCGTCCACGTT
ATGGTGACTATTCCGAGTACGTTCGACATCTACTTGCGGGACGGGCAGGT
AAAGAAGGGGGCCAGTGCTGGAAGTGGTGGGCGCAACGGTGGGGCTGGGG
ACCTCGGGCGGGGCGGGAGCGGAAAAGGCGGCGGCAGCAACAAGAAAAAC
TCGGGCGACGCCACGACGGACGTATCGGTCGCTCTCCACCTCGTGCGAGT
CAGGGCTGTGGTCGAGGAGGAAATCTGTGTGGTGGGGTTGGACAAGCGGT
CGCCGCCGGAGGCATCTTTTCCCGCCCTGAGCAGCATGGCCGATAGCCGC
AGCGATGGCACCTCGTCGAGCCAGAGCACTTTCGCTGGGTCGCCGGCGGT
GTCGGTGGACAGAGGAGCGGGGAGGATTCCGTCGAACGTTAACCAAGGGC
TCTCGGAAGGAAGACATGCGAATCCTGGAAGAAAAGCGAGTGACGGATCG
TCGTCAGAGACGAGCGAGACGCCGGCGCCAGCGTTCCCTGCGCTAACGCG
CACGGAACGGCGCATGCGAGTCACCCTGGTGCCCGAGCCTAGCGTCGTGG
GGGAGATGGTGCGGAACTTTTCTCGAACGTTCGGAGTGGAAGTGTCTGAC
CCCGAGCCTCCTCGCGTCCTGGGGAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig52872:2390..3469-

>mRNA_H-elongata_contig52872.12609.1 ID=mRNA_H-elongata_contig52872.12609.1|Name=mRNA_H-elongata_contig52872.12609.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2160bp|location=Sequence derived from alignment at H-elongata_contig52872:2390..3469- (Himanthalia elongata Himel1 dioecious)
TGGCACGACGAACTGTGGGCGACGGTGGAGAAGCGCATCATGGAAGACCT
TCTGGAAATCGAGTCCCGTTTGGCGGGGGCAGAGGGCAGCGGCAGGGCCA
CGAGCGATTCCGATTCAAAAAGGGCGAGCGCCTTAGAGTCACAAGAAAGA
GCTCTATCGAACGAACAGTGGAACAAGGCTCGCGCCGTCGCGACGACGAG
CGAGGTGTTTAAGGCCATGTCGCGGACGGGGGCAGGGGGCGACGCCTACT
TCGCCCTGGTGGCGCTCTTCTGTACCGCGGACAAGCTGGTGGTGCCGGTG
GCGTGTCAGGAGTCTCCCATCGAGGTGGACTTCTTCTGCCATCACCAACA
GCAGCAGCAGAAGGGGTGGACGAAGAATTCACCCAAACCGAAGGGGAGAG
AGTCGTCGGTCGGAGGGGCTGGAAGGACCGAGGCGGGGGGCGTCCACGTT
ATGGTGACTATTCCGAGTACGTTCGACATCTACTTGCGGGACGGGCAGGT
AAAGAAGGGGGCCAGTGCTGGAAGTGGTGGGCGCAACGGTGGGGCTGGGG
ACCTCGGGCGGGGCGGGAGCGGAAAAGGCGGCGGCAGCAACAAGAAAAAC
TCGGGCGACGCCACGACGGACGTATCGGTCGCTCTCCACCTCGTGCGAGT
CAGGGCTGTGGTCGAGGAGGAAATCTGTGTGGTGGGGTTGGACAAGCGGT
CGCCGCCGGAGGCATCTTTTCCCGCCCTGAGCAGCATGGCCGATAGCCGC
AGCGATGGCACCTCGTCGAGCCAGAGCACTTTCGCTGGGTCGCCGGCGGT
GTCGGTGGACAGAGGAGCGGGGAGGATTCCGTCGAACGTTAACCAAGGGC
TCTCGGAAGGAAGACATGCGAATCCTGGAAGAAAAGCGAGTGACGGATCG
TCGTCAGAGACGAGCGAGACGCCGGCGCCAGCGTTCCCTGCGCTAACGCG
CACGGAACGGCGCATGCGAGTCACCCTGGTGCCCGAGCCTAGCGTCGTGG
GGGAGATGGTGCGGAACTTTTCTCGAACGTTCGGAGTGGAAGTGTCTGAC
CCCGAGCCTCCTCGCGTCCTGGGGAGTTGATGGCACGACGAACTGTGGGC
GACGGTGGAGAAGCGCATCATGGAAGACCTTCTGGAAATCGAGTCCCGTT
TGGCGGGGGCAGAGGGCAGCGGCAGGGCCACGAGCGATTCCGATTCAAAA
AGGGCGAGCGCCTTAGAGTCACAAGAAAGAGCTCTATCGAACGAACAGTG
GAACAAGGCTCGCGCCGTCGCGACGACGAGCGAGGTGTTTAAGGCCATGT
CGCGGACGGGGGCAGGGGGCGACGCCTACTTCGCCCTGGTGGCGCTCTTC
TGTACCGCGGACAAGCTGGTGGTGCCGGTGGCGTGTCAGGAGTCTCCCAT
CGAGGTGGACTTCTTCTGCCATCACCAACAGCAGCAGCAGAAGGGGTGGA
CGAAGAATTCACCCAAACCGAAGGGGAGAGAGTCGTCGGTCGGAGGGGCT
GGAAGGACCGAGGCGGGGGGCGTCCACGTTATGGTGACTATTCCGAGTAC
GTTCGACATCTACTTGCGGGACGGGCAGGTAAAGAAGGGGGCCAGTGCTG
GAAGTGGTGGGCGCAACGGTGGGGCTGGGGACCTCGGGCGGGGCGGGAGC
GGAAAAGGCGGCGGCAGCAACAAGAAAAACTCGGGCGACGCCACGACGGA
CGTATCGGTCGCTCTCCACCTCGTGCGAGTCAGGGCTGTGGTCGAGGAGG
AAATCTGTGTGGTGGGGTTGGACAAGCGGTCGCCGCCGGAGGCATCTTTT
CCCGCCCTGAGCAGCATGGCCGATAGCCGCAGCGATGGCACCTCGTCGAG
CCAGAGCACTTTCGCTGGGTCGCCGGCGGTGTCGGTGGACAGAGGAGCGG
GGAGGATTCCGTCGAACGTTAACCAAGGGCTCTCGGAAGGAAGACATGCG
AATCCTGGAAGAAAAGCGAGTGACGGATCGTCGTCAGAGACGAGCGAGAC
GCCGGCGCCAGCGTTCCCTGCGCTAACGCGCACGGAACGGCGCATGCGAG
TCACCCTGGTGCCCGAGCCTAGCGTCGTGGGGGAGATGGTGCGGAACTTT
TCTCGAACGTTCGGAGTGGAAGTGTCTGACCCCGAGCCTCCTCGCGTCCT
GGGGAGTTGA
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