mRNA_H-elongata_contig52831.12602.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52831.12602.1
Unique NamemRNA_H-elongata_contig52831.12602.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: D7FH11_ECTSI (Urea/Na+ high-affinity symporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH11_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.230e-49
Identity = 90/96 (93.75%), Postives = 92/96 (95.83%), Query Frame = 3 
Query:  234 FIFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            FIFG+INIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLT  EAG+GLVPPATAL VLG GGATLILIM
Sbjct:  288 FIFGIINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTGDEAGSGLVPPATALFVLGKGGATLILIM 383
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BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: A0A7S3Y3G8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3G8_HETAK)

HSP 1 Score: 156 bits (394), Expect = 5.020e-43
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 3 
Query:  237 IFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            IFG+INIVGNFGTVFVDQSYWQSAIAAKP SSHKGYL+GG+ WFTIPFALATSLGLA +A+QLP+T+ EAGAGLVPPA A ++LG GGA LI  M
Sbjct:  217 IFGIINIVGNFGTVFVDQSYWQSAIAAKPSSSHKGYLMGGLVWFTIPFALATSLGLATVALQLPVTATEAGAGLVPPAAATYMLGQGGAVLIACM 311
[Close]
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: A0A7S4DBJ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ6_HETAK)

HSP 1 Score: 156 bits (394), Expect = 3.160e-42
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 3 
Query:  237 IFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            IFG+INIVGNFGTVFVDQSYWQSAIAAKP SSHKGYL+GG+ WFTIPFALATSLGLA +A+QLP+T+ EAGAGLVPPA A ++LG GGA LI  M
Sbjct:  217 IFGIINIVGNFGTVFVDQSYWQSAIAAKPSSSHKGYLMGGLVWFTIPFALATSLGLATVALQLPVTATEAGAGLVPPAAATYMLGQGGAVLIACM 311
[Close]
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: A0A7S3T1F5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T1F5_9SPIT)

HSP 1 Score: 154 bits (389), Expect = 3.390e-42
Identity = 74/94 (78.72%), Postives = 84/94 (89.36%), Query Frame = 3 
Query:  240 FGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            FG+INIVGNFGTVFVDQSYWQSAIAAKP S+HKGYLLGG+ WFTIPFALATSLGLA +A+QLP+TS EAG+GLVPPA A H+ GN G+ +I IM
Sbjct:   26 FGIINIVGNFGTVFVDQSYWQSAIAAKPASTHKGYLLGGLVWFTIPFALATSLGLAGVALQLPITSSEAGSGLVPPAVATHLFGNAGSVMIAIM 119
[Close]
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: A0A835Z2D2_9STRA (Urea/Na+ high-affinity symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 6.390e-42
Identity = 75/96 (78.12%), Postives = 87/96 (90.62%), Query Frame = 3 
Query:  234 FIFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            FIFGVIN++GNFGTVF+DQ YWQ+AIAAKP +SHKGYL+GG+CWFTIPFALATSLGLAA+AMQLP+T  EAG+GLVP ATA  ++G GGAT ILIM
Sbjct:  291 FIFGVINVIGNFGTVFLDQGYWQAAIAAKPSASHKGYLIGGLCWFTIPFALATSLGLAAVAMQLPVTHGEAGSGLVPAATAYFIMGKGGATAILIM 386
[Close]
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: A0A7S4DBE8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE8_HETAK)

HSP 1 Score: 156 bits (394), Expect = 3.650e-41
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 3 
Query:  237 IFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            IFG+INIVGNFGTVFVDQSYWQSAIAAKP SSHKGYL+GG+ WFTIPFALATSLGLA +A+QLP+T+ EAGAGLVPPA A ++LG GGA LI  M
Sbjct:  314 IFGIINIVGNFGTVFVDQSYWQSAIAAKPSSSHKGYLMGGLVWFTIPFALATSLGLATVALQLPVTAAEAGAGLVPPAAATYMLGQGGAVLIACM 408
[Close]
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: A0A1Z5KJU0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJU0_FISSO)

HSP 1 Score: 149 bits (376), Expect = 3.280e-40
Identity = 72/95 (75.79%), Postives = 87/95 (91.58%), Query Frame = 3 
Query:  237 IFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            +FG+INIVGNFGTVFVDQSYWQSAIAA+P+S+ KGYLLGG+CWF+IPF+LATSLGLA+ A+ LP++S EAG+GLVPPA A+ +LGN GA LILIM
Sbjct:    8 MFGLINIVGNFGTVFVDQSYWQSAIAARPESAAKGYLLGGICWFSIPFSLATSLGLASTALMLPISSSEAGSGLVPPAVAVELLGNTGAALILIM 102
[Close]
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: E1ZFA1_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZFA1_CHLVA)

HSP 1 Score: 149 bits (375), Expect = 3.870e-40
Identity = 69/96 (71.88%), Postives = 84/96 (87.50%), Query Frame = 3 
Query:  234 FIFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            FIFG+INI+GNFGTVFVDQ+YW  AIA+KP SS+KGY+LGG+ WF+IPF LATSLGLA++AM LP+T  EAGAGLVPPATA+++LG GGA  + IM
Sbjct:  275 FIFGIINIIGNFGTVFVDQAYWMGAIASKPSSSYKGYILGGLMWFSIPFTLATSLGLASVAMDLPITKAEAGAGLVPPATAVYILGKGGAVWLTIM 370
[Close]
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: A0A7S0IJ31_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IJ31_MICPS)

HSP 1 Score: 152 bits (384), Expect = 1.020e-39
Identity = 75/95 (78.95%), Postives = 83/95 (87.37%), Query Frame = 3 
Query:  237 IFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            IFG+INIVGNFGTVFVDQSYWQSAIAAKP SS KGYLLGG+ WFTIPFALAT++GLA +A+ LP+TS EAGAGLVPPA A H+LG GGA  I IM
Sbjct:  332 IFGIINIVGNFGTVFVDQSYWQSAIAAKPSSSTKGYLLGGLVWFTIPFALATAMGLATVALDLPVTSAEAGAGLVPPAIAAHLLGKGGAAAITIM 426
[Close]
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Match: D5AAN3_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5AAN3_PICSI)

HSP 1 Score: 139 bits (350), Expect = 1.080e-39
Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = 3 
Query:  237 IFGVINIVGNFGTVFVDQSYWQSAIAAKPQSSHKGYLLGGMCWFTIPFALATSLGLAALAMQLPLTSVEAGAGLVPPATALHVLGNGGATLILIM 521
            +FG INI+GNFGTVFVD  YW SAIAA+P S+HKGYLLGG+ WF +PF+LATSLGL ALA+ LPLT  EA  GLVPPATA+ ++G GGA L+L M
Sbjct:    8 VFGFINIIGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTESEASHGLVPPATAMALMGKGGAVLLLTM 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52831.12602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH11_ECTSI2.230e-4993.75Urea/Na+ high-affinity symporter n=2 Tax=Ectocarpu... [more]
A0A7S3Y3G8_HETAK5.020e-4380.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DBJ6_HETAK3.160e-4280.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3T1F5_9SPIT3.390e-4278.72Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A835Z2D2_9STRA6.390e-4278.13Urea/Na+ high-affinity symporter n=1 Tax=Tribonema... [more]
A0A7S4DBE8_HETAK3.650e-4180.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A1Z5KJU0_FISSO3.280e-4075.79Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
E1ZFA1_CHLVA3.870e-4071.88Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S0IJ31_MICPS1.020e-3978.95Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
D5AAN3_PICSI1.080e-3969.47Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52831contigH-elongata_contig52831:1553..2708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size523
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52831.12602.1prot_H-elongata_contig52831.12602.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52831 1554..2159 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930862.8128443-UTR-H-elongata_contig52831:1552..15531622930862.8128443-UTR-H-elongata_contig52831:1552..1553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52831 1553..1553 +
1691679602.3572063-UTR-H-elongata_contig52831:1552..15531691679602.3572063-UTR-H-elongata_contig52831:1552..1553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52831 1553..1553 +
1622930862.9213414-UTR-H-elongata_contig52831:2159..22641622930862.9213414-UTR-H-elongata_contig52831:2159..2264Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52831 2160..2264 +
1691679602.3958335-UTR-H-elongata_contig52831:2159..22641691679602.3958335-UTR-H-elongata_contig52831:2159..2264Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52831 2160..2264 +
1622930862.9485793-UTR-H-elongata_contig52831:2555..27081622930862.9485793-UTR-H-elongata_contig52831:2555..2708Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52831 2556..2708 +
1691679602.4133983-UTR-H-elongata_contig52831:2555..27081691679602.4133983-UTR-H-elongata_contig52831:2555..2708Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52831 2556..2708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930862.8357031-CDS-H-elongata_contig52831:1553..16681622930862.8357031-CDS-H-elongata_contig52831:1553..1668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52831 1554..1668 +
1691679602.3665872-CDS-H-elongata_contig52831:1553..16681691679602.3665872-CDS-H-elongata_contig52831:1553..1668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52831 1554..1668 +
1622930862.8531733-CDS-H-elongata_contig52831:1976..20931622930862.8531733-CDS-H-elongata_contig52831:1976..2093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52831 1977..2093 +
1691679602.3796334-CDS-H-elongata_contig52831:1976..20931691679602.3796334-CDS-H-elongata_contig52831:1976..2093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52831 1977..2093 +
1622930862.902602-CDS-H-elongata_contig52831:2127..21591622930862.902602-CDS-H-elongata_contig52831:2127..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52831 2128..2159 +
1691679602.3883157-CDS-H-elongata_contig52831:2127..21591691679602.3883157-CDS-H-elongata_contig52831:2127..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52831 2128..2159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52831.12602.1

>prot_H-elongata_contig52831.12602.1 ID=prot_H-elongata_contig52831.12602.1|Name=mRNA_H-elongata_contig52831.12602.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MVVSRRRSSPRTPTPRCSSLRCSSSCSSSTLETANSWAAPVLCTRSSRLS
LRLPTAPTVPRASSRCHPAAVLLTVMRIHFWRDQHRR*
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mRNA from alignment at H-elongata_contig52831:1553..2708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52831.12602.1 ID=mRNA_H-elongata_contig52831.12602.1|Name=mRNA_H-elongata_contig52831.12602.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1156bp|location=Sequence derived from alignment at H-elongata_contig52831:1553..2708+ (Himanthalia elongata Himel1 dioecious)
CATGGTGGTCTCAAGGCGACGTTCCTCGCCTCGTACACCCACACCACGGT
GCTCTTCGTTGCGCTGCTCATCTTCGTGTTCGTCATCTACGCTGGAGACA
GCGAATTCGTGGGCAGGTTCGTTCCTCTATGCACTGCATCACTAGTCGGC
GAGAGGGGTTTGACAGCGCTCATCGTGCCTTTCGAGTACGGTGTATGGCT
TTCGCTCACTAGACCCTTCTGAATTTAAAAAGGCGAAACGGTATTAGTAA
AAGGGCTAACTGCGAGAAGCCGGTCAAGTACTTCGAGGTCCAGGACCGTA
AAGTCGTCTCGGCTTGTCTCGTAAAGTAATTACTTTGCGTATGCGTCAAG
AATCCCTTGGATGTCCACCTGTCCCTCGTGATTGATGTATCAAATTCGTC
CGCTCCGTGAAATGTCCACCACAGCCCCGGTGCTATGTACGAGAAGCTCG
AGGCTCTCGTTAAGATTACCGACTGCTCCTACGGTCCCGAGGGCGAGTTC
ACGCTGTCACCCGGCTGCGGTCCTGTTGACGGTAATGAGAATGGTTCCTA
CCTCACCATGCTCTCGAGAGAGGGCTTCATTTTTGGCGTGATCAACATCG
TCGGTAACTTTGGTACCGTCTTCGTTGACCAGTCGTACTGGCAGTCCGCC
ATTGCCGCGAAGCCACAATCGTCGCACAAGGGGTACCTGCTCGGCGGCAT
GTGCTGGTTCACGTAAGTAACTTGTACGTCGATGGGTGGAGTGTTCCTGG
GCTTGTTCTCACTCTTTTTCATCCTTAAGTTCGGTGTATTTTAAGTGTGC
GGTAGTTGCTGTATCTAAACGAACGAAGGACACCCGGTTGAATTAATTAT
TCAGGACTGGGTGGCTTAGAAAATCGGTGTAGCTGTAGGTCCGTGGACCC
CATCCATCGGAAGGAGTTTGGGGTGCGCACATTCTAAGGATATACGTGTG
TTTGGGAACCAGTCTAACCTCTCACTTTGTATGCCACCTCCCTGGTCGAC
CAGGATCCCCTTCGCACTCGCTACCTCCCTCGGTCTGGCGGCCCTGGCAA
TGCAGCTTCCCCTCACCAGCGTGGAAGCCGGTGCAGGTCTCGTACCCCCT
GCTACCGCTCTGCACGTGCTTGGTAACGGAGGTGCCACCCTCATCCTCAT
CATGCT
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Coding sequence (CDS) from alignment at H-elongata_contig52831:1553..2708+

>mRNA_H-elongata_contig52831.12602.1 ID=mRNA_H-elongata_contig52831.12602.1|Name=mRNA_H-elongata_contig52831.12602.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig52831:1553..2708+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGTCTCAAGGCGACGTTCCTCGCCTCGTACACCCACACCACGGTG
CTCTTCGTTGCGCTGCTCATCTTCGTGTTCGTCATCTACGCTGGAGACAG
CGAATTCGTGGGCAGATGGTGGTCTCAAGGCGACGTTCCTCGCCTCGTAC
ACCCACACCACGGTGCTCTTCGTTGCGCTGCTCATCTTCGTGTTCGTCAT
CTACGCTGGAGACAGCGAATTCGTGGGCAGCCCCGGTGCTATGTACGAGA
AGCTCGAGGCTCTCGTTAAGATTACCGACTGCTCCTACGGTCCCGAGGGC
GAGTTCACGCTGTCACCCGGCTGCGGTCCTGTTGACGGTAATGAGAACCC
CGGTGCTATGTACGAGAAGCTCGAGGCTCTCGTTAAGATTACCGACTGCT
CCTACGGTCCCGAGGGCGAGTTCACGCTGTCACCCGGCTGCGGTCCTGTT
GACGGTAATGAGAATTCATTTTTGGCGTGATCAACATCGTCGGTAATTCA
TTTTTGGCGTGATCAACATCGTCGGTAA
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