mRNA_H-elongata_contig5282.12600.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: D8LMA3_ECTSI (FtsJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA3_ECTSI) HSP 1 Score: 385 bits (989), Expect = 2.740e-125 Identity = 239/506 (47.23%), Postives = 293/506 (57.91%), Query Frame = 1
Query: 295 GVARSGTSRRARKLLLLEAVDPEAFSRACIADPSLCRAILRVYLLGGGMCTSLEDVGRTLAEEVATGKYAASPGTSISNFRVEEGGDRAAALAVDPSTLLVRVQALPKVMERQLVDEVSPFWDDSFPGLVRERQGGLFTHVLSVIFVRGAFLYGLAPADTHGRCIMENNQEDSAVCRAFYKIKEATARAGISYDNEWTAIDVGSSPGGWTSFLAARCRRVLSVDPAELDPEVLALPNVVHVRQTAQAARGRLVDLLI-----------AGEGWPRDESGRSGCDAAAENGVDGCSARVIKSPDWLEPPAGRIPK-GAAGIASAETGVGIRE-------VSRADVIVSDMNAEPQVVADVLLSCLAAGLAKPGALLVATFKDFCGRKK-MGDEVAMAVSCLEAG--IAADDTWSRGESLDSTREAEWGSSNERGDVAIAVGESVEESEHAVIGQGQGGNTSFAAAAGVHL------AIWKLEHVQTMRLLSGGRAEQTIIARVARAT 1728
G ARSGTSR +KL LLEA DP+ FSR C++DPSLCR++LRVYLLGGG+CTSLEDVG+ VME QL+DE + FWD++FP L RERQ G FTHVLS++F RGAFL+GLA A THGR I++NN ED+AVCRA+YKIKE T+RA +S+ +WTAID+G++PGGWTSFLA++CRRVLSVDPAELD VLALPNVVHV++ +AA+G L+DLL GEG RD+ G D G G S P G I G+A A + +G + A+++VSDMNAEP VVADVLLS ++AGLA+PGALLVATFKDFCGR+K M DEVA+AV L G + GE A G A G + A G G AGV W+LE ++TM+LL+GGRAE TI+ARVA T
Sbjct: 2 GTARSGTSRYRQKLALLEARDPQEFSRRCVSDPSLCRSLLRVYLLGGGLCTSLEDVGKA-------------------------------------------------VMEMQLIDEETTFWDENFPNLSRERQAGAFTHVLSLVFARGAFLWGLAQAATHGRSIIDNNNEDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDSAVLALPNVVHVQKLIEAAKGTLLDLLAEDAPAHERESRGGEGEERDDGGGRTHDGRLSGG--GSFTPEASSLGSRLTPGGPIASAGSADTAGEASSMGANDRPTAPGKSQGAELVVSDMNAEPAVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVALAVERLRVGTFVVGGGASGVGEGDGGPAAAPCGGGPPN---AGTSGNDADGGLEAGNGLSHAGTPPEGRVAGVACEKEGAEGWWRLEGIETMKLLAGGRAEVTIVARVAHGT 453
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: A0A6H5JTM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM6_9PHAE) HSP 1 Score: 260 bits (665), Expect = 3.510e-80 Identity = 137/246 (55.69%), Postives = 155/246 (63.01%), Query Frame = 1
Query: 46 MVHAPKAQFSPCKTHQFWLEDPWTRPACEWEEKCPRTHPFHSGPDDPELRRTNVALQTESSQLSRVRTYAVEVLGAGGAASVTGVARSGTSRRARKLLLLEAVDPEAFSRACIADPSLCRAILRVYLLGGGMCTSLEDVGRTLAEEVATGKYAASPGTSISNFRVEEGGDRAAALAVDPSTLLVRVQALPKVMERQLVDEVSPFWDDSFPGLVRERQGGLFTHVLSVIFVRGAFLYGLAPADTHGR 783
MVH K + C+TH FWLEDPW+RPACEW E C HP GP+DP L RTNVALQTESSQLSRVR YA VLG GG AS TG ARSGTSR +KL LLEA DP+ FSR C++DPSLCR++LRVYLLGGG+C SLEDVG+ VME QL+DE + FWDD+FP L RERQ G FTHVLS++F RGAFL+GLA A THGR
Sbjct: 1 MVHVAKNTLAACQTHLFWLEDPWSRPACEWGEDCTFPHPKPEGPEDPGLLRTNVALQTESSQLSRVRAYASGVLGKGGEASDTGTARSGTSRYRQKLALLEARDPQEFSRRCVSDPSLCRSLLRVYLLGGGLCASLEDVGKA-------------------------------------------------VMEMQLIDEETTFWDDNFPNLSRERQAGAFTHVLSLVFARGAFLWGLAEAATHGR 197
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: A0A6H5JWK0_9PHAE (FtsJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK0_9PHAE) HSP 1 Score: 192 bits (489), Expect = 1.030e-52 Identity = 139/313 (44.41%), Postives = 169/313 (53.99%), Query Frame = 1
Query: 886 TAIDVGSSPGGWTSFLAARCRRVLSVDPAELDPEVLALPNVVHVRQTAQAARGRLVDLLI-----------AGEGWPRDESGRSGCDAAAENGVDGCSARVIKSPDWLEPPAGRIPK-GAAGIASAETGVGIR-------EVSRADVIVSDMNAEPQVVADVLLSCLAAGLAKPGALLVATFKDFCGRKK-MGDEVAMAVSCLEAGIAADDTWSRGESLDSTREAEW----GSSNERGDVAIAVGESVEESEHAVIGQGQGGNTSFAAAAGVHL--------AIWKLEHVQTMRLLSGGRAEQTIIARVARAT 1728
T ID+G++PGGWTSFLA++CRRVLSVDPAELDP VLALPNVVHV+Q +AA G L +LL GEG RD+ G D G G S S P G + G+A A + +G + A+++VSDMNAEP VVADVLLS ++AGLA+PGALLVATFKDFCGR+K M DEVA+AV L G A D + G G N A G +E G G AGV W+LE ++TM+LL+GGRAE TI+ARVA T
Sbjct: 27 TQIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQQLIEAAEGTLHELLAEDAPTHERECGCGEGEERDDGGGRTHDGRNSGG--GSSTPEQSSLASRLTPGGPVASAGSADTADEASSMGANGRPAAPGKRGGAELVVSDMNAEPAVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVAVAVERLRVGTAIVDGGASGVGXXXXXXXXXXCGGGPPN-----AETSGNDADEGLEPGNGLSHAGTPPEGRVAGVACEKEGAGEEGWWRLEEIETMKLLAGGRAEVTIVARVAHGT 332
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: A0A835YXR4_9STRA (FtsJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR4_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.360e-25 Identity = 98/339 (28.91%), Postives = 147/339 (43.36%), Query Frame = 1
Query: 592 LVRVQALPKVMERQLVDE----VSPFWDDSFPGLVRERQGGL-FTHVLSVIFVRGAFLYGLAPADTHGRCIMENNQEDSAVCRAFYKIKEATARAGISYDNEWTAIDVGSSPGGWTSFLAARCRRVLSVDPAELDPEVLALPNVVHVRQTAQAARGRLVDLLIAGEGWPRDESGRSGCDAAAENGVDGCSARVIKSPDWLEPPAGRIPKGAAGIASAETGVGI----------------------------------------REVSRADV---------IVSDMNAEPQVVADVLLSCLAAGLAKPGALLVATFKDFCGR----KKMGDEVAMAVSCL 1434
+VR QA P+ +E++L+++ + + + R + F V SV++ +G F G+ P I+ + + A CRAFYK++EAT RAGI+Y W A+D+G+SPGGWT FL+ R RV +VDP +D +VLALPNV ++R QAA R + W R + +R ++ A R +S E V + R R DV +VSDMN P + + + AAG+ K A+L+ +FKDFCG K +VA A++ L
Sbjct: 275 VVRFQACPRSLEKELLNDHALAMKAIKEPKYKDFAALRLHPIDFELVASVVYTQGLFFAGVVPRAAWPGDIVAASIDAHAPCRAFYKLREATDRAGIAYQQNWNALDMGASPGGWTHFLSPRVARVFAVDPGSMDADVLALPNVTYLRAKVQAASER---ASVRTRCWGRYGARSVXXXXXXXXXXXXXXSRCVRMRGGSGARAQRRRLALMTFSSREPHVFVLSXXXXXXXXXXXXVRARGSGGSGHGXXXXXXXXXXXGQQRRARRVDVLAQLPAMDLVVSDMNMAPDDLMQQVEAATAAGVVKDTAMLIMSFKDFCGPDNSDKGRDAQVARAMAAL 610
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: C1FIB9_MICCC (FtsJ domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FIB9_MICCC) HSP 1 Score: 94.7 bits (234), Expect = 9.900e-17 Identity = 114/396 (28.79%), Postives = 159/396 (40.15%), Query Frame = 1
Query: 22 CYRGDKCHMVHAPKAQFSPCKTHQFWLEDPWTRPACEWEE------KCPRTHPFHSGPDDPELRRTNVALQTESSQLSRVRTYAVEVLGAGGAASVTGVARSGTSRRARKLLLLEAVDPEAFSRACIA--DPSLCRAILRVYLLGGGMCTSLE---------DVGRTLAEEVATGKYAASPGTSI-----SNFRVEEGGDRAAALAVDPSTLLVRVQALPKVMERQLVD--EVSPFWDDSFPGLVRERQGGLFTHVLSVIFVRGAFLYGLAPADTHG------------RCIMENNQEDSAVCRAFYKIKEATARAGISYDNEWTAIDVGSSPGGWTSFLAARCR-----RVLSVDPAELDP--EVLALPNVVHVRQTAQAA-----RGRLVDLLI 1065
C R D C H P AQ C W D + C EE K PR H P + ++ALQ E RV + E+LGA +V G AR+ SR L+L+ A + A I D L I R Y G + D G A+ G A + ++ S GG++ ++ A +RV+ P + +++ E P S R TH L V+ VRG + D G + + A+CRAF+KI+EATARAG++ + W +DVG++PGGWT +L AR V +VDPAEL PNV H++ + A R VDLL+
Sbjct: 57 CARPD-CPDAHVPIAQRQTC-----WTLDRYG--VCAREEARRADPKAPRCWFPHPVPPPADH---HIALQVEVGMSDRVVSRCRELLGAD---AVVGAARADLSRNGDVLVLVTAGHRGVANAARILADDEHLAARIKRAYATGANHAADRKGDERNERGGDEGVLFADASVVGDDADALDATLREKLASLVDAALGGEKDSSFAAR-----IRVRCFPPRLRDVVLEALEARPVLGGSHGWETCARVDDA-THALDVVAVRGRAHVTVWSLDRTGPDSLRAWLMDAGEAARKRRTDAGAMCRAFHKIEEATARAGVAIERTWRCVDVGAAPGGWTQWLCARLDAACGGEVFAVDPAELGDFKNGRLPPNVTHLKMRGEDAVETVRRAGDVDLLV 432
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: A0A7S1G2S1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2S1_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.020e-15 Identity = 72/201 (35.82%), Postives = 100/201 (49.75%), Query Frame = 1
Query: 502 AASPGTSISNFRVEEGGDRAAALAVDPSTLL-VRVQALPKVMERQLVD--------EVSPFWDDSFPGLVRERQGGLFTHVLSVIFVRGAFLYGLAPADTHGRCIMENNQEDSAVCRAFYKIKEATARAGISYD--NEWTAIDVGSSPGGWTSFLA-ARCRRVLSVDPAELDPEVLALPNVVHVRQTAQAARGRLVDLLIA 1068
AA P +S + R R + DP ++L VR+Q PK +ER + D V+P D +V QG ++THV F + A H E + V RA+YK++EA AR G+ EWT IDVG+SPGGW+ +LA A RVL++DP E+ +A P VVH+ A+ A V LL+A
Sbjct: 16 AAVPDSSEAAPRSGTAVGRGSGADGDPESVLRVRIQGFPKRVERDVADLLEGTPGVHVTPTAPDQVVYVV-VLQGCVYTHVQPAA---ERFAGKIGDAGRH---------EGTVVSRAYYKLREAVARGGLKLPAGGEWTGIDVGASPGGWSQYLAEAGASRVLAIDPGEV---TVADPAVVHMAMRAEEA----VPLLLA 196
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: A0A7S4B2L4_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2L4_CHRCT) HSP 1 Score: 88.2 bits (217), Expect = 1.010e-14 Identity = 89/321 (27.73%), Postives = 140/321 (43.61%), Query Frame = 1
Query: 232 LSRVRTYAVEVLGAGGAASVTGVARSGTSRRARKLLLLEAVDPEAFSRACIADPSLCRAILRVYLLGGGMCT---SLEDVGRTLAEEVATGKYAASPGTSISNFRVEEGGDRAAALAVDPSTLLVRVQALPKVMERQLVDEVSPFWDDSFPGLVRERQGGLFTHVLSVIFVRGAFLYGLAPADTHGRCIMEN------------------------------------------------NQEDSAVCRAFYKIKEATARAGISYDNEWTAIDVGSSPGGWTSFLAAR-CRRVLSVDPAELDPEVLALPNVVHVRQTAQAA 1038
L+R+ A+EVLG V VA+ R ++L A D A +RA AD L R + RVYLL T +L+ +G +L + A A +P + + G + A A + +VR A P+ +E++ D + + F LVR + + ++++ G + G+A + G + E Q + VCRA+YK+KE +R +++ + AIDVG+SPGGWTS+LA R C +++++DPAEL P V H+RQ Q A
Sbjct: 138 LARMAESAIEVLGV-----VRPVAQV---RHMECGVVLRASDAVALTRAIGADELLLRVVQRVYLLEQRCATLSAALDALGASLRQPRA---QAGAPNAAPLE-PADASGVASEADAPQRAQQVVRCAAFPRTLEKRATDTLH---ERGF--LVRPSN---YDALACLVYMHGFYCVGVATKEDFGGALWEKPRTASDRAEGPSEQKRARAVHGSQQLSEDGGGAAVEAAAHNDSAATRMRQTSAPVCRAYYKLKELGSRELVAFSDCSVAIDVGASPGGWTSYLAERGCSKIIAIDPAELRQTEPPPPCVEHLRQKLQDA 438
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: L8GJZ6_ACACA (Ribosomal RNA large subunit methyltransferase J, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJZ6_ACACA) HSP 1 Score: 85.1 bits (209), Expect = 5.820e-14 Identity = 50/128 (39.06%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 706 FTHVLSVIFVRGAFLYGLAPADTH-GRCIMENNQEDSAVCRAFYKIKEATARAG---ISYDNEWTAIDVGSSPGGWTSFLAARCRRVLSVDPAELDPEVLALPNVVHVRQTAQAARGRL-----VDLL 1062
FTHVLS+ RG + YGLAP + G ++ + V RA++K+KE R ++ +WTAIDVG++PGGWT +L+ ++V+S+DP EL E+ PNVVH+++ + L VD+L
Sbjct: 214 FTHVLSIARERGRYYYGLAPKELFWGPESGVHSVQMDKVSRAYHKMKEVFTRIDCLRLADTAQWTAIDVGAAPGGWTQYLSPLMKQVISIDPGELRIELP--PNVVHLKKKVEDCMEELRKEAPVDML 339
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: A0A059LME3_9CHLO (FtsJ domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LME3_9CHLO) HSP 1 Score: 83.2 bits (204), Expect = 1.870e-13 Identity = 63/186 (33.87%), Postives = 92/186 (49.46%), Query Frame = 1
Query: 595 VRVQALPKVMERQLVDEVSPFWDDSFPGLVRERQGGLFTHVLSVIFVRGAFLYGLAPADTHGRCI-MENNQEDSAVCRAFYKIKEATARAGISYDNEWT-------AIDVGSSPGGWTSFLAARCRRVLSVDPAELDPEVLALPNVVHVRQTAQAARGRLVDLL--IAGEGWPRDESGRSGCDAAA 1122
VR+Q P+ +E ++ V +S+ + Q F H+L V+ + Y L T R + ++ +A RA K++EA A A WT AID G++PGGWT+ LA+R + V++VDPA LDP V+AL NV HVR A+ A + L + G G E+ CD A
Sbjct: 120 VRLQCFPRNLEEKIGVRVWTKLPESW-----DLQPVGFAHLLDVVSLDDGLRYFLRKESTLFRSTALTPPRQANAPSRAPGKLEEALAMAA------WTPPPGGGAAIDAGAAPGGWTAALASRVKAVVAVDPAALDPAVIALSNVAHVRDEAENAGAEIDAALRRLMGRGGEEGEAPPPSCDVGA 294
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Match: A0A087SR67_AUXPR (FtsJ domain-containing protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SR67_AUXPR) HSP 1 Score: 81.3 bits (199), Expect = 4.550e-13 Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 1
Query: 694 QGGLFTHVLSVIFVRGAFLYGLAPADTHGRCIMENNQE-DSAVCRAFYKIKEATA------RAGISYDNEWTAIDVGSSPGGWTSFLAARCRRVLSVDPAELDPEVLALPNVVHVRQTAQAARGRL-VDLLIAGEGWPRD 1089
Q FTHVL V+ Y ++P R + +C+A K+ EA A R G+ AID+G+SPGGW++ LA+ V+S+DPA++ PE LALPN+ H++ + A ++ L AG G D
Sbjct: 116 QPAAFTHVLDVVETAAGVAYSMSPCPRLFRTTAWTRPRLEGPLCKATSKLAEALAWVKHAPRGGV-------AIDLGASPGGWSTLLASSMHHVISIDPADMAPEALALPNLTHIKSRVETALPQIEAALAAAGAGGGAD 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5282.12600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5282.12600.1 >prot_H-elongata_contig5282.12600.1 ID=prot_H-elongata_contig5282.12600.1|Name=mRNA_H-elongata_contig5282.12600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=578bp RFFHQNDCYRGDKCHMVHAPKAQFSPCKTHQFWLEDPWTRPACEWEEKCPback to top mRNA from alignment at H-elongata_contig5282:3078..11207+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5282.12600.1 ID=mRNA_H-elongata_contig5282.12600.1|Name=mRNA_H-elongata_contig5282.12600.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8130bp|location=Sequence derived from alignment at H-elongata_contig5282:3078..11207+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5282:3078..11207+ >mRNA_H-elongata_contig5282.12600.1 ID=mRNA_H-elongata_contig5282.12600.1|Name=mRNA_H-elongata_contig5282.12600.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3468bp|location=Sequence derived from alignment at H-elongata_contig5282:3078..11207+ (Himanthalia elongata Himel1 dioecious)back to top |