mRNA_H-elongata_contig52819.12599.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52819.12599.1
Unique NamemRNA_H-elongata_contig52819.12599.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52819.12599.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 7.190e-11
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    7 FRRGLT-GEPSAQVDPIRVVRALAARTTKTRPRLYATEKRTWLSEKIKILELAPLMYFNPQEKFVSGAMVLPKGGAYRMVADYRGANDQVETV--AWPHP 297
            FR G+  G+P A V+P+RV     A   K RPR Y   K  WL+  +    +  L++ N Q    S AM  PK G YR+++D+R AN+QVE V    P+P
Sbjct:  515 FRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANNQVEKVPGVMPNP 614
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BLAST of mRNA_H-elongata_contig52819.12599.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.390e-10
Identity = 40/105 (38.10%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:    4 VFRRGLTGEPSAQVDPIRVVRALAARTTKTRPRLYATEKRTWLSEKIKILELAPLMYFNPQEKFVSGAMVLPKGGA----YRMVADYRGANDQVETVAWPHPLLE 306
            VFRRG+ G+P A V P+ V     A+  K R R Y  +K  WL+  +  L    L+Y N Q  + S  M+ PK       YR V D+R  N Q+E    P P LE
Sbjct:  632 VFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLE 736
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BLAST of mRNA_H-elongata_contig52819.12599.1 vs. uniprot
Match: W2QIX2_PHYPN (RT_RNaseH_2 domain-containing protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QIX2_PHYPN)

HSP 1 Score: 51.2 bits (121), Expect = 3.500e-5
Identity = 34/104 (32.69%), Postives = 52/104 (50.00%), Query Frame = 1 
Query:    1 EVFRRGLTGEPSAQVDPIRVVRALAARTTKTRPRLYATEKRTWLSEKIKILELAPLMYFNPQEKFVSGAMVLPKGGA--YRMVADYRGANDQVETVAWPHPLLE 306
            +VFR  +  +P   +  + +     A   +   R  + E R +L + I+ L  A L Y N Q K+ S   V+ K G   +RM  D + AN++VE V WP P+LE
Sbjct:  555 DVFRLKIGRDPPVDMPAMEITLKPGAVPVRCWARRNSPEHREFLKKHIRELLEAGLCYRNSQSKWCSPPHVVRKPGVGNFRMTVDVKLANEKVEKVVWPIPILE 658
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52819.12599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JCK9_9PHAE7.190e-1140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE1.390e-1038.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
W2QIX2_PHYPN3.500e-532.69RT_RNaseH_2 domain-containing protein n=3 Tax=Phyt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52819contigH-elongata_contig52819:566..880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue5.4e-10
Seed eggNOG ortholog4792.ETI44325
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHNK@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930862.5757768-CDS-H-elongata_contig52819:565..8801622930862.5757768-CDS-H-elongata_contig52819:565..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52819 566..880 -
1691679602.2727425-CDS-H-elongata_contig52819:565..8801691679602.2727425-CDS-H-elongata_contig52819:565..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52819 566..880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52819.12599.1prot_H-elongata_contig52819.12599.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52819 566..880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52819.12599.1

>prot_H-elongata_contig52819.12599.1 ID=prot_H-elongata_contig52819.12599.1|Name=mRNA_H-elongata_contig52819.12599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
EVFRRGLTGEPSAQVDPIRVVRALAARTTKTRPRLYATEKRTWLSEKIKI
LELAPLMYFNPQEKFVSGAMVLPKGGAYRMVADYRGANDQVETVAWPHPL
LEKV*
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mRNA from alignment at H-elongata_contig52819:566..880-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52819.12599.1 ID=mRNA_H-elongata_contig52819.12599.1|Name=mRNA_H-elongata_contig52819.12599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig52819:566..880- (Himanthalia elongata Himel1 dioecious)
GAAGTGTTCCGCCGGGGGCTGACAGGAGAGCCGTCGGCGCAGGTGGATCC
GATACGGGTGGTGCGGGCGCTCGCTGCACGGACTACGAAGACGAGGCCGA
GATTGTACGCTACGGAGAAACGTACGTGGTTGTCGGAGAAGATAAAAATA
CTTGAGCTTGCGCCATTGATGTATTTTAACCCGCAGGAAAAGTTTGTGAG
TGGGGCGATGGTGCTACCGAAGGGGGGTGCATACCGAATGGTTGCAGACT
ACCGGGGGGCGAACGATCAAGTGGAAACAGTTGCGTGGCCGCATCCGCTC
CTGGAGAAGGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig52819:566..880-

>mRNA_H-elongata_contig52819.12599.1 ID=mRNA_H-elongata_contig52819.12599.1|Name=mRNA_H-elongata_contig52819.12599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig52819:566..880- (Himanthalia elongata Himel1 dioecious)
GAAGTGTTCCGCCGGGGGCTGACAGGAGAGCCGTCGGCGCAGGTGGATCC
GATACGGGTGGTGCGGGCGCTCGCTGCACGGACTACGAAGACGAGGCCGA
GATTGTACGCTACGGAGAAACGTACGTGGTTGTCGGAGAAGATAAAAATA
CTTGAGCTTGCGCCATTGATGTATTTTAACCCGCAGGAAAAGTTTGTGAG
TGGGGCGATGGTGCTACCGAAGGGGGGTGCATACCGAATGGTTGCAGACT
ACCGGGGGGCGAACGATCAAGTGGAAACAGTTGCGTGGCCGCATCCGCTC
CTGGAGAAGGTGTAGGAAGTGTTCCGCCGGGGGCTGACAGGAGAGCCGTC
GGCGCAGGTGGATCCGATACGGGTGGTGCGGGCGCTCGCTGCACGGACTA
CGAAGACGAGGCCGAGATTGTACGCTACGGAGAAACGTACGTGGTTGTCG
GAGAAGATAAAAATACTTGAGCTTGCGCCATTGATGTATTTTAACCCGCA
GGAAAAGTTTGTGAGTGGGGCGATGGTGCTACCGAAGGGGGGTGCATACC
GAATGGTTGCAGACTACCGGGGGGCGAACGATCAAGTGGAAACAGTTGCG
TGGCCGCATCCGCTCCTGGAGAAGGTGTAG
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