mRNA_H-elongata_contig52785.12591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52785.12591.1
Unique NamemRNA_H-elongata_contig52785.12591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: A0A6H5K918_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K918_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.440e-21
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   10 VFRCAEPDKGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            VFRCAEP KGWGLRC++ IPAG+FVACYLGEVL +R VD+ G+   DDY+FGLDF
Sbjct:    2 VFRCAEPGKGWGLRCVEPIPAGSFVACYLGEVLTDRSVDDRGRQTHDDYVFGLDF 56
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: D7FM06_ECTSI (Similar to SET domain, bifurcated 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM06_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.700e-21
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 PQKVFRCAEPDKGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            P +VFRCAE  KGWGLRC++ IPAG+FVACYLGEVL +R VD+ G+   DDY+FGLDF
Sbjct:  450 PLQVFRCAESGKGWGLRCVEPIPAGSFVACYLGEVLTDRSVDDRGRQTHDDYVFGLDF 507
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: A0A7R9U8J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8J4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-13
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    7 KVFRCAEPDKGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            +VFR A  D+GWG+RCL+ IPAG FV  Y+GE+L E++ +  G  NGD+YLF LD+
Sbjct:  180 QVFRTA--DRGWGVRCLNDIPAGAFVTDYIGEILTEKEAEARGMQNGDEYLFDLDY 233
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: A0A6G0Y2E9_APHCR (Uncharacterized protein (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Y2E9_APHCR)

HSP 1 Score: 69.7 bits (169), Expect = 1.700e-12
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   34 KGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            KGWG+RCL+ IP GTF+ CY+G +L + + DE GK  GD+YL  LDF
Sbjct:  356 KGWGVRCLNDIPRGTFICCYIGNILNDTNADEQGKKYGDEYLLDLDF 402
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: A0A6G0TCH0_APHGL (Uncharacterized protein n=2 Tax=Aphis TaxID=464929 RepID=A0A6G0TCH0_APHGL)

HSP 1 Score: 68.9 bits (167), Expect = 3.170e-12
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   34 KGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            KGWG+RCL+ IP GTF+ CY+G +L E +VDE G   GD+YL  LDF
Sbjct:  331 KGWGVRCLNDIPRGTFICCYIGNILNETNVDEQGINYGDEYLLDLDF 377
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: A0A2S2PMK8_SCHGA (Histone-lysine N-methyltransferase eggless n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PMK8_SCHGA)

HSP 1 Score: 68.2 bits (165), Expect = 5.760e-12
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   34 KGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            KGWG+RCL+ IP GTF+ CY+G +L E D  E GK  GD+YL  LDF
Sbjct:  211 KGWGVRCLNDIPQGTFICCYVGNILTETDATEQGKNYGDEYLADLDF 257
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: UPI000F00B2D5 (LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETDB1-like n=1 Tax=Rhopalosiphum maidis TaxID=43146 RepID=UPI000F00B2D5)

HSP 1 Score: 67.4 bits (163), Expect = 1.110e-11
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   34 KGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            KGWG+RCL+ IP GTF+ CY+G +L E +  E GK +GD+YL  LDF
Sbjct:  477 KGWGVRCLNDIPRGTFICCYVGNILTETNATEQGKNHGDEYLADLDF 523
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: UPI000B93996C (histone-lysine N-methyltransferase SETDB1-B-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B93996C)

HSP 1 Score: 67.0 bits (162), Expect = 1.520e-11
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   34 KGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            KGWG+RCL+ IP GTF+ CY+G +L E +  E GK  GD+YL  LDF
Sbjct:  413 KGWGVRCLNDIPKGTFICCYIGNILTETNATEQGKKYGDEYLADLDF 459
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: J9K9U4_ACYPI (Uncharacterized protein n=3 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9K9U4_ACYPI)

HSP 1 Score: 64.7 bits (156), Expect = 9.850e-11
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   34 KGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            KGWG+RCL+ I  GTF+ CY+G++L E +  E GK  GD+YL  LDF
Sbjct:  274 KGWGVRCLNDIARGTFICCYIGDILTETNATEQGKKYGDEYLADLDF 320
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BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Match: UPI000DC13E5A (LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETDB1-B-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13E5A)

HSP 1 Score: 64.3 bits (155), Expect = 1.350e-10
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   34 KGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGDDYLFGLDF 174
            KGWG+RCL+ +P GTF+ CY+G +L E +  E G   GD+YL  LDF
Sbjct:  325 KGWGVRCLNDLPRGTFICCYIGNILNEINATEQGDCYGDEYLANLDF 371
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52785.12591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K918_9PHAE1.440e-2172.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM06_ECTSI2.700e-2168.97Similar to SET domain, bifurcated 1 n=1 Tax=Ectoca... [more]
A0A7R9U8J4_9STRA1.000e-1355.36Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6G0Y2E9_APHCR1.700e-1257.45Uncharacterized protein (Fragment) n=1 Tax=Aphis c... [more]
A0A6G0TCH0_APHGL3.170e-1259.57Uncharacterized protein n=2 Tax=Aphis TaxID=464929... [more]
A0A2S2PMK8_SCHGA5.760e-1259.57Histone-lysine N-methyltransferase eggless n=1 Tax... [more]
UPI000F00B2D51.110e-1157.45LOW QUALITY PROTEIN: histone-lysine N-methyltransf... [more]
UPI000B93996C1.520e-1157.45histone-lysine N-methyltransferase SETDB1-B-like n... [more]
J9K9U4_ACYPI9.850e-1155.32Uncharacterized protein n=3 Tax=Acyrthosiphon pisu... [more]
UPI000DC13E5A1.350e-1053.19LOW QUALITY PROTEIN: histone-lysine N-methyltransf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52785contigH-elongata_contig52785:348..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.1e-18
Seed eggNOG ortholog2880.D7FM06
Preferred nameSETDB2
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K09097,ko:K10779,ko:K11421,ko:K18494,ko:K18626,ko:K18655
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04066,ko04550,ko04934,ko05200,ko05204,ko05211,map00310,map04066,map04550,map04934,map05200,map05204,map05211
GOsGO:0000003,GO:0000122,GO:0000278,GO:0001501,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001947,GO:0002009,GO:0003002,GO:0003006,GO:0003007,GO:0003143,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008283,GO:0008356,GO:0008757,GO:0009292,GO:0009294,GO:0009506,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0016020,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0017145,GO:0018022,GO:0018023,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0033043,GO:0033044,GO:0034968,GO:0035050,GO:0035239,GO:0035295,GO:0035556,GO:0036124,GO:0036211,GO:0040007,GO:0040029,GO:0042054,GO:0042078,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0045892,GO:0045934,GO:0045935,GO:0046974,GO:0048132,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048589,GO:0048598,GO:0048609,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051037,GO:0051038,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051321,GO:0051567,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0060348,GO:0060429,GO:0060562,GO:0060968,GO:0060972,GO:0061371,GO:0061647,GO:0065007,GO:0070013,GO:0070986,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0080090,GO:0090308,GO:0090309,GO:0097159,GO:0098722,GO:0098728,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:1905269,GO:1990841,GO:2000112,GO:2000113,GO:2001141,GO:2001252
EggNOG free text desc.histone-lysine N-methyltransferase activity
EggNOG OGsCOG0553@1,COG2940@1,KOG1015@2759,KOG1141@2759
EC2.1.1.43,3.6.4.12,3.6.4.13
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03019,ko03036,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSET and ADD zinc finger domain protein
Ec32 orthologEc-22_000420.1
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.7809153-CDS-H-elongata_contig52785:347..5211622930861.7809153-CDS-H-elongata_contig52785:347..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52785 348..521 +
1691679601.9322631-CDS-H-elongata_contig52785:347..5211691679601.9322631-CDS-H-elongata_contig52785:347..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52785 348..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52785.12591.1prot_H-elongata_contig52785.12591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52785 348..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52785.12591.1

>prot_H-elongata_contig52785.12591.1 ID=prot_H-elongata_contig52785.12591.1|Name=mRNA_H-elongata_contig52785.12591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
PQKVFRCAEPDKGWGLRCLDVIPAGTFVACYLGEVLRERDVDEHGKVNGD
DYLFGLDF
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mRNA from alignment at H-elongata_contig52785:348..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52785.12591.1 ID=mRNA_H-elongata_contig52785.12591.1|Name=mRNA_H-elongata_contig52785.12591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig52785:348..521+ (Himanthalia elongata Himel1 dioecious)
CCTCAAAAGGTGTTTCGGTGCGCCGAGCCGGACAAGGGTTGGGGCTTACG
CTGCCTGGATGTGATTCCGGCTGGTACCTTTGTGGCGTGCTACCTCGGAG
AAGTCCTCCGGGAGCGTGACGTGGACGAGCACGGCAAGGTTAACGGAGAC
GACTATCTCTTTGGCCTGGACTTC
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Coding sequence (CDS) from alignment at H-elongata_contig52785:348..521+

>mRNA_H-elongata_contig52785.12591.1 ID=mRNA_H-elongata_contig52785.12591.1|Name=mRNA_H-elongata_contig52785.12591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig52785:348..521+ (Himanthalia elongata Himel1 dioecious)
CCTCAAAAGGTGTTTCGGTGCGCCGAGCCGGACAAGGGTTGGGGCTTACG
CTGCCTGGATGTGATTCCGGCTGGTACCTTTGTGGCGTGCTACCTCGGAG
AAGTCCTCCGGGAGCGTGACGTGGACGAGCACGGCAAGGTTAACGGAGAC
GACTATCTCTTTGGCCTGGACTTCCCTCAAAAGGTGTTTCGGTGCGCCGA
GCCGGACAAGGGTTGGGGCTTACGCTGCCTGGATGTGATTCCGGCTGGTA
CCTTTGTGGCGTGCTACCTCGGAGAAGTCCTCCGGGAGCGTGACGTGGAC
GAGCACGGCAAGGTTAACGGAGACGACTATCTCTTTGGCCTGGACTTC
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