mRNA_H-elongata_contig52740.12588.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A6H5L606_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L606_9PHAE) HSP 1 Score: 379 bits (973), Expect = 1.840e-126 Identity = 199/267 (74.53%), Postives = 228/267 (85.39%), Query Frame = 1
Query: 1 ALAREMDSKREAFMGKWVMEG-WKGSQQEDMFYSALVCLVRNGLTDED-PELNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDIPLDGSSE-------MEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAMRLVARGEDKGI 774
ALAREM+SK FM K +G W+G+Q EDMFY AL+ LV++GLTDE P L+GAYLNSY+RLMGI+VQEVGTRSTPAS+MVLKSFL+WEREIRKELTEPAW+ RPPDLVGSWAL+TSGWDGL+D+P+D S+ M D+GL+DLVV+F KDGTVQ+PVEKGVGL W+VEPGPTHLDT+YFEMIPAAPKV +S AGAGGGTTL YTGYVDRGARIE+RFSKRF+KMTGRMTSV RG+ERPSTRFAMRLVARGE G+
Sbjct: 292 ALAREMESKHTKFMTKCFGKGSWQGTQ-EDMFYHALINLVKHGLTDEGVPALSGAYLNSYERLMGILVQEVGTRSTPASEMVLKSFLAWEREIRKELTEPAWKSRPPDLVGSWALDTSGWDGLTDLPVDSSAAGGGTTDGMVDLGLSDLVVSFLKDGTVQIPVEKGVGLQWRVEPGPTHLDTIYFEMIPAAPKVKASSK-----AGAGGGTTLSYTGYVDRGARIEARFSKRFLKMTGRMTSVERGQERPSTRFAMRLVARGERIGL 552
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A836CDA0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDA0_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.060e-58 Identity = 125/261 (47.89%), Postives = 161/261 (61.69%), Query Frame = 1
Query: 4 LAREMDSKREAFMGKWV--MEG--WKGSQQEDMFYSALVCLVRNGLTDEDPELNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDI-PLDGSSEMEDVGLND----LVVAFRKDGTVQVPVEKGV-GLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAMRLVAR 756
LAREM SKR AFM KWV +G W+GSQ ED++Y AL+ L+ NGLT L + N+Y R++ +V+E+G R TPAS VL SF++WE E+R+ L W+ P DLVG WA+ D L D P+ S L V ++DG+ ++P V GL W+++PGPTHLDT+ FE+ AA G G G L YTGYVDRGARIE+RFS+R +KMTGR+T VVRG +RPSTRF+MRLV R
Sbjct: 195 LAREMGSKRTAFMTKWVGGAQGGEWEGSQ-EDVYYQALIELLSNGLTAGARGLRNPWANAYARVVAALVRELGARRTPASSRVLTSFVTWESELRRTLRSAGWDENPLDLVGVWAV-GDDMDLLPDYAPVAALSSXXXXXXXXXXXMLRVMLKRDGSAEIPDNGRVKGLRWRLDPGPTHLDTLRFEVRQAA--------GGGDALGGEEGALLSYTGYVDRGARIEARFSRRPLKMTGRLTRVVRGEQRPSTRFSMRLVER 445
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A4D9CMD2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMD2_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.700e-42 Identity = 96/250 (38.40%), Postives = 128/250 (51.20%), Query Frame = 1
Query: 4 LAREMDSKREAFMGKWVMEGWKGSQQEDMFYSALVCLVRNGLTDEDPE-LNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDIPLDGSSEMEDVG-LNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAMRL 747
L E+ + F+ KWV G E ++Y AL+ + GL P + G Y N+YQR +VQE+GTRS + +F+ WE +RK LT+ W+ P +L G W L SG + L GS G + FR+DGT++VP E G+ W EPGPTHLDT+ FE+ P L YTGYVDRG RIE+RFSKR +KM GR+ RG R S +F+M+L
Sbjct: 323 LTDELTKGKPGFLEKWV--GGDEGCDEAVYYGALIAYLTGGLEAPAPAAMGGGYSNAYQRFTTSLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQDMWDRHPKELTGQWTLVDSGPNPAGATTLPGSGAETGKGEQRSANLVFRRDGTLRVPPELGMDGTWSFEPGPTHLDTIRFELRQGTPD----------------NRVLCYTGYVDRGQRIETRFSKRPIKMKGRVVLRARGEARSSGKFSMQL 554
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: W7T252_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T252_9STRA) HSP 1 Score: 161 bits (408), Expect = 2.740e-42 Identity = 97/253 (38.34%), Postives = 134/253 (52.96%), Query Frame = 1
Query: 4 LAREMDSKREAFMGKWVMEGWKGSQQEDMFYSALVCLVRNGLTDEDPE-LNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWD--GLSDIPLDGSS--EMEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAMRL 747
L E+ + F+ KWV G + E ++Y AL+ + GL P + G Y N+YQR +VQE+GTRS + +F+ WE +RK LT+ W+ P +L G W L SG + G + +P G+ + E N + FR+DGT++VP E G+ W EPGPTHLDT+ FE+ P L YTGYVDRG RIE+RFSKR +KM GR+ RG R S +F+M+L
Sbjct: 335 LTNELTKGKPGFLEKWV--GGEEGCDEAVYYGALIAYLTGGLEAPAPAAMGGGYSNAYQRFTTSLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQDMWDRHPKELTGQWTLVDSGPNPAGATTLPGPGAETGKGEQRSAN---LVFRRDGTLRVPPELGMDGTWSFEPGPTHLDTIRFELRQGTPD----------------NRVLCYTGYVDRGQRIETRFSKRPIKMKGRVVLRARGEARSSGKFSMQL 566
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7S2UV57_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV57_9STRA) HSP 1 Score: 150 bits (380), Expect = 5.890e-40 Identity = 93/267 (34.83%), Postives = 140/267 (52.43%), Query Frame = 1
Query: 1 ALAREMDSKREAFMGKWVMEGWKGSQQEDMFYSALVCLVRNG-------LTDEDP--------ELNGAYLNSYQRLMGIVVQEVGTRSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDIPLDGSSEME----DVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLL-YTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAM 741
ALA + + +W + QE +FY A++ L+R+G LT + +L G+YLNS++RL+ ++V+ +GT + S VLK F +WE ++RK +TEP W+ P +L G W L ++G + M+ D +N +V DGTV+V E G G+ W +EPGPTHLDTV F++ G G T+L Y GY+DRG R+E++FSK+ V+M GR+ + RG R +T F M
Sbjct: 112 ALAVSLQADLTTLTQEWQLAA---DSQEKVFYEAMLSLLRDGFDGAKSYLTSDSSLRVHNAVAKLKGSYLNSFERLVSLLVETIGTGAGITSSEVLKGFSTWETQVRKNVTEPRWDALPKELTGPWML------------MEGDAAMDFPGYDTEINQQIVYLNPDGTVKVDSESGEGIEWSLEPGPTHLDTVRFQVRAF---------------GTGPEETILNYVGYIDRGQRLETKFSKQPVRMKGRLITTFRGNVRSTTAFRM 348
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7S2SL04_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SL04_9STRA) HSP 1 Score: 116 bits (291), Expect = 5.270e-26 Identity = 74/230 (32.17%), Postives = 114/230 (49.57%), Query Frame = 1
Query: 70 GSQQEDMFYSALVCLVRNGLTDEDPELNGAYLNSYQRLMGIVVQEVGT----RSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWALETSGWDGLSDIPLDGSSEMEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPST--RFAM 741
G+ ++ A+ L+++GL L +YL+++QRL+ VVQE+GT R +L F WERE+R +T W+ P D++G W L S L + ++ + V + DG V V +G G+ W+++PGPTHLDT Y + P+ SD T+ + GY+DRG R+ESR S R ++M+G + S + P T RF M
Sbjct: 370 GNGDATQYFLAMASLLQDGLKVRYDHLKPSYLDAFQRLLDRVVQEMGTTKLGRGRRPDLKMLSEFALWEREVRLNMTGSLWQEHPADMLGGWTLVESDDASLLSSTMSRNNARGSEPVGAAAVTLQPDGVVVVNSGEGTGISWRLDPGPTHLDTCYIT-VALEPE---SD------------NTVTFMGYIDRGQRLESRLSGRSIRMSGLIYSTGDEGDVPDTVSRFVM 583
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7S4DB13_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB13_HETAK) HSP 1 Score: 105 bits (261), Expect = 1.610e-23 Identity = 81/248 (32.66%), Postives = 114/248 (45.97%), Query Frame = 1
Query: 97 SALVCLVRNGLTDEDPE----------LNGAYLNSYQRLMGIVVQEVGT-----RSTPASQMVLKSFLSWEREIRKELTEPAWEPRPPDLVGSWAL-----ETSGWDGLSDIPLDGSSEMEDVGLNDL-VVAFRKDGTVQVP------------VEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGRERPSTRFAM 741
+A + VR L ++DP GAY N+Y RL + E+G + PAS V SF SWERE+RK T W+P+P L G W++ ETSG E D N L V+ + DG+V + E+ GL W++ PGPTHLDT+ F++ +G L YT Y+DRG R+E+ FS R ++ GR+T +RG+E+ F M
Sbjct: 9 AAFLRAVRALLAEDDPARAAAEGGRALTTGAYRNAYDRLAAWLFGELGAAGLGLQGVPASYRVTASFTSWERELRKTNTAKFWDPQPEYLWGEWSIGDDRSETSGRRPF---------EYVDDPENKLTVIKLKSDGSVHLEGGXXXXXXXXXKQERLQGLRWELTPGPTHLDTLTFQVA----------------SGQNNNRLLTYTSYIDRGQRLETMFSGRPIRAKGRVTVPLRGKEKIVNSFFM 231
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A6U4GLT9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GLT9_9STRA) HSP 1 Score: 105 bits (261), Expect = 4.170e-22 Identity = 83/268 (30.97%), Postives = 135/268 (50.37%), Query Frame = 1
Query: 4 LAREMDSKREAFMGKWVMEGWK-GSQQEDM--FYSALVCLVRNGLTD----EDPELNGAYL--NSYQRLMGIVVQEVGTR---STPASQMVLKSFLSWEREIRKELT-EPAWEPRPPDLVGSWALETSGWD-GLSDIPLDGSSEMEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVRGR---ERPSTRFAMRLVAR 756
+A + ++R+ F+ + + G + G+ + D+ FY ALV L +G+ E+ A+ NS QR++G++VQE+G R S + F++WE E+R+ +T W+P P DL G+W L + +P + E V L + A GTV+ + L W + PGPTHLDT + + +SD A L +TGY+DRG R+E++ S R V+M+GR+ + R +RP +FAM + A+
Sbjct: 251 MAAGLKAQRQGFLNDYGLAGAEEGTPESDIAWFYDALVDLCESGMATAVALEESSYGRAFCWANSMQRILGLLVQEMGLRLEGSETLEDPIFTRFVNWESELRQNITGNYGWDPTPKDLEGTWCLGAFATSYTTTSMPAELGGEACRVRL---LFASDGKGTVKSLSGPDLPLRWSLSPGPTHLDTCSIQ-------IGTSDDNA----------DLFFTGYIDRGQRLETKLSGRSVRMSGRVVRRRKDRLGVDRPMGKFAMTMDAK 498
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7R9UG48_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG48_9STRA) HSP 1 Score: 102 bits (253), Expect = 4.710e-21 Identity = 79/271 (29.15%), Postives = 129/271 (47.60%), Query Frame = 1
Query: 4 LAREMDSKREAFMGKWVMEGW------KGSQQEDM--FYSALVCLVRNGLTDEDPELNGA------YLNSYQRLMGIVVQEVGTRSTPASQM---VLKSFLSWEREIRKELTEP-AWEPRPPDLVGSWALE--TSGWDGLSDIPLDGSSEMEDVGLNDLVVAFRKDGTVQVPVEKGVG--LLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVR---GRERPSTRFAM 741
+A + +R+ F+ + + + K + + D FY A++ L G+ + A + N+ QRL+G++VQE+G R A + + F+SWE ++R+ +T W P DL G+W+L T+ + S S+E + + + + F DG V + G W + PGPTHLDT ++ + D A L +TGY+DRG R+E++FSKR V M+GR+T R G RP RF++
Sbjct: 231 MAERLKEQRDTFLRDYQLGDFADTRIDKSTTESDSVWFYDAMIDLCETGMATAIAQEEAARARSFCWANALQRLLGLLVQEMGLRLEGAESIEDPIFTRFVSWESQLRRNITSNYGWNKHPRDLQGTWSLSSFTTSYARTSQ----SSAEQQIGDASTMRLVFEADGKGTVSMSSGTNQPFAWSLSPGPTHLDTCNI-------RISTQDDSA----------DLFFTGYIDRGQRLETKFSKRPVLMSGRVTRRRRDGTGVARPMGRFSL 480
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Match: A0A7S2NUN1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUN1_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 5.320e-17 Identity = 77/262 (29.39%), Postives = 123/262 (46.95%), Query Frame = 1
Query: 4 LAREMDSKREAFMGKWV------MEGWKGSQQEDMFYSALVCLVRN-----GLTDEDPELN--GAYLNSYQRLMGIVVQEVGTRSTPASQMVLKS------------FLSWEREIRKELTEPAWEPRPPDLVGSWAL--ETSGWDGLSDIPLDGSSEMEDVGLNDLVVAFRKDGTVQVPVEKGVGLLWKVEPGPTHLDTVYFEMIPAAPKV*SSDVGAAAGAGAGGGTTLLYTGYVDRGARIESRFSKRFVKMTGRMTSVVR 708
L+ +++ + AF+ +W ++ + S+ F++ LV L+R +++ +P L +Y NSY+RL+ +V+ P S + S F WE +RK P P DL+G W + E G E +G++ +V F+ DG V V +GL W+++PGPTHLDT F+++ S D G L Y G+VDRGAR+ESRFS+R +K+ G +T +R
Sbjct: 219 LSETLEADKAAFIQRWYPGTSYDVDVTEESRPGVQFFNNLVFLLRKCYSEGSISELEPPLPICASYANSYERLVANLVELGSGYINPWSLQKILSVLPKTPTEEFGRFAKWETSLRK--ISPDINAYPSDLIGKWQVQDEVGG---------------ETIGVS--IVEFQPDGQVAVSPPM-LGLRWRLDPGPTHLDTCTFQVL-------SED-----------GAILQYRGFVDRGARLESRFSRRSIKIQGAVTFQMR 442 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52740.12588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52740.12588.1 >prot_H-elongata_contig52740.12588.1 ID=prot_H-elongata_contig52740.12588.1|Name=mRNA_H-elongata_contig52740.12588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp MTGRMTSVVRGRERPSTRFAMRLVARGEDKGITSYRE*back to top mRNA from alignment at H-elongata_contig52740:500..3215+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52740.12588.1 ID=mRNA_H-elongata_contig52740.12588.1|Name=mRNA_H-elongata_contig52740.12588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2716bp|location=Sequence derived from alignment at H-elongata_contig52740:500..3215+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52740:500..3215+ >mRNA_H-elongata_contig52740.12588.1 ID=mRNA_H-elongata_contig52740.12588.1|Name=mRNA_H-elongata_contig52740.12588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig52740:500..3215+ (Himanthalia elongata Himel1 dioecious)back to top |