mRNA_H-elongata_contig52709.12585.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: D8LAY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY3_ECTSI) HSP 1 Score: 133 bits (334), Expect = 2.310e-33 Identity = 117/148 (79.05%), Postives = 130/148 (87.84%), Query Frame = 1
Query: 1 MAWRRIDVHRAVEQGDIAVLARYLDTGGDPNRKDAEYGAAPVHWAALRGKLDALALLLDNGADLEARTNTDGTALVWGCMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRARDNQGERPGDNFDSEV 444
MAWRRIDVHRAVE+GD+AV+ RYLD GGDP +KD EYGAAPVHWAALRG+ DAL+LLL+ G D+E+RT+TDGT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP+A DN+G+RPGD FD EV
Sbjct: 1 MAWRRIDVHRAVERGDLAVVKRYLDAGGDPEQKDEEYGAAPVHWAALRGRSDALSLLLERGGDVESRTSTDGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAEDNRGDRPGDKFDPEV 148
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: A0A6H5JTU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU0_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.550e-32 Identity = 116/148 (78.38%), Postives = 129/148 (87.16%), Query Frame = 1
Query: 1 MAWRRIDVHRAVEQGDIAVLARYLDTGGDPNRKDAEYGAAPVHWAALRGKLDALALLLDNGADLEARTNTDGTALVWGCMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRARDNQGERPGDNFDSEV 444
MAWRRIDVHRAVE+GD+AV+ RYLD GGDP +KD +YGAAPVHWAALRG+ DAL+LLL+ G D+E+RT TDGT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP+A DN+G+RPGD FD EV
Sbjct: 1 MAWRRIDVHRAVERGDLAVVKRYLDAGGDPEKKDEKYGAAPVHWAALRGRSDALSLLLERGGDVESRTCTDGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAEDNRGDRPGDKFDPEV 148
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: A0A835ZAM8_9STRA (Ankyrin repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM8_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.710e-19 Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 1 MAWRRIDVHRAVEQGDIAVLARYLDTGGDPNRKDAEYGAAPVHWAALRGKLDALALLLDNGADLEARTNTDG 216
MAW+R+D RA ++G++++L +YLD+GG + +D +Y A P+HWA LRGKLDA+ALL++ A LEART G
Sbjct: 1 MAWKRVDPFRAAQRGEVSMLRQYLDSGGSISAQDDKYLATPLHWACLRGKLDAVALLIERSAPLEARTLNGG 72
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: A0A495ZU32_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A495ZU32_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 2.390e-7 Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1
Query: 28 RAVEQGDIAVLARYLDTGGDPNRKDAEYGAAPVHWAALRGKLDALALLLDNGADLEARTNTDGTAL 225
+A GDIA + + L G DPN KD + G + AAL G + + LLL++GAD+ AR DGTAL
Sbjct: 607 KAAFTGDIAAMKQALTDGADPNTKDPQSGNTLLATAALMGHTEIVTLLLEHGADVNARNRDDGTAL 672
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: A0A7X3XKP6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X3XKP6_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 6.020e-7 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 43 GDIAVLARYLDTGGDPNRKDAEYGAAPVHWAALRGKLDALALLLDNGADLEARTNTDGTAL 225
GD+A + + L G DPN KD + G + AAL G + + LLL++GAD+ AR+ DGTAL
Sbjct: 612 GDVAAMKQALTDGADPNTKDPQSGNTLLAVAALMGHTEIVTLLLEHGADVNARSRDDGTAL 672
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: A0A7K8R5G4_9PASS (ANR66 protein (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K8R5G4_9PASS) HSP 1 Score: 55.8 bits (133), Expect = 1.100e-6 Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 19 DVHRAVEQGDIAVLARYLDTGG-DPNRKDAEY-GAAPVHWAALRGKLDALALLLDNGADLEARTNTDGTA 222
++H AV GD ++ + L TG DPN KD ++ P+HWAA +G+LD + LL+D+GA R++ TA
Sbjct: 3 ELHEAVAVGDYDLVEKILKTGRCDPNHKDVDWHDRTPLHWAAAKGRLDLVKLLVDHGARHCLRSDVGWTA 72
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: A0A7S0MN59_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MN59_9CRYP) HSP 1 Score: 54.3 bits (129), Expect = 2.030e-6 Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 19 DVHRAVEQGDIAVLARYLDTGG-DPNRKDAEYGAAPVHWAALRGKLDALALLLDNGADLEARTNTDGTALVW 231
++H A +G + + R +D G DP+ +D+ GA+ +H+AALRG+ DAL+ L + G D+ + ++ T L W
Sbjct: 29 ELHEAASEGGVLWMQRLIDQNGFDPSAQDSG-GASAMHFAALRGRSDALSFLFERGVDVNIQDSSGCTPLSW 99
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: UPI00053F40F9 (ankyrin repeat domain-containing protein 66 n=1 Tax=Fukomys damarensis TaxID=885580 RepID=UPI00053F40F9) HSP 1 Score: 55.5 bits (132), Expect = 3.190e-6 Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 22 VHRAVEQGDIAVLARYLDTG-GDPNRKDAEYG-AAPVHWAALRGKLDALALLLDNGA 186
+H+AV GD + + R L G DPN KDA++ P+HWAA+RG ++ L LLL++GA
Sbjct: 12 LHQAVAAGDYSTVKRILKKGLCDPNHKDADWNDRTPLHWAAIRGHMEVLYLLLEHGA 68
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: UPI000F8C79AD (ankyrin repeat domain-containing protein n=1 Tax=Muricauda aquimarina TaxID=254955 RepID=UPI000F8C79AD) HSP 1 Score: 53.5 bits (127), Expect = 3.410e-6 Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 28 RAVEQGDIAVLARYLDTGGDPNRKDAEYGAAPVHWAALRGKLDALALLLDNGADLEARTNTDGTAL 225
+AV QGD+ + ++++ G D N+K G AP+H+AA K + L +L++NGA+L+ R + TA+
Sbjct: 46 KAVMQGDVETVKKFIELGEDVNQKSL--GKAPIHYAARYNKAEVLKVLIENGANLKMRCDGGMTAM 109
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Match: UPI0003502906 (ankyrin repeat domain-containing protein 66 isoform X1 n=2 Tax=Heterocephalus glaber TaxID=10181 RepID=UPI0003502906) HSP 1 Score: 55.1 bits (131), Expect = 3.650e-6 Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 22 VHRAVEQGDIAVLARYLDTG-GDPNRKDAEY-GAAPVHWAALRGKLDALALLLDNGA 186
+H+AV GD + + R L G DPN KDA++ P+HWAA+RG ++ L LLL++GA
Sbjct: 19 LHQAVAAGDYSAVKRILKKGLCDPNHKDADWHDRTPLHWAAIRGHMEVLHLLLEHGA 75 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52709.12585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52709.12585.1 >prot_H-elongata_contig52709.12585.1 ID=prot_H-elongata_contig52709.12585.1|Name=mRNA_H-elongata_contig52709.12585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp MAWRRIDVHRAVEQGDIAVLARYLDTGGDPNRKDAEYGAAPVHWAALRGKback to top mRNA from alignment at H-elongata_contig52709:253..3868- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52709.12585.1 ID=mRNA_H-elongata_contig52709.12585.1|Name=mRNA_H-elongata_contig52709.12585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3616bp|location=Sequence derived from alignment at H-elongata_contig52709:253..3868- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52709:253..3868- >mRNA_H-elongata_contig52709.12585.1 ID=mRNA_H-elongata_contig52709.12585.1|Name=mRNA_H-elongata_contig52709.12585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig52709:253..3868- (Himanthalia elongata Himel1 dioecious)back to top |