mRNA_H-elongata_contig52672.12581.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52672.12581.1
Unique NamemRNA_H-elongata_contig52672.12581.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52672.12581.1 vs. uniprot
Match: A0A6H5JE10_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE10_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.280e-11
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  835 GLGRSGRPSCRAPCECPRCLLEADGD-RSCGGEMLKILADQALEEGRHNTALGLYRSALAA 1014
            GL    R   +  C CPRCLLEA GD R CG E LK+LADQALEEGRH  ALGLYR++LAA
Sbjct:  353 GLSSLQRQPPQLVCNCPRCLLEAGGDHRLCGRETLKVLADQALEEGRHEAALGLYRASLAA 413
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BLAST of mRNA_H-elongata_contig52672.12581.1 vs. uniprot
Match: D8LR24_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR24_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.100e-11
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  835 GLGRSGRPSCRAPCECPRCLLEADGD-RSCGGEMLKILADQALEEGRHNTALGLYRSALA 1011
            GL    R   +  C CPRCLLEA GD R CG E+LK+LADQALEEGRH  ALGLYR++LA
Sbjct:  169 GLSSLQRQPPQLVCNCPRCLLEAGGDHRLCGREILKVLADQALEEGRHEAALGLYRASLA 228
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BLAST of mRNA_H-elongata_contig52672.12581.1 vs. uniprot
Match: C1MHS0_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MHS0_MICPC)

HSP 1 Score: 73.6 bits (179), Expect = 1.320e-10
Identity = 56/159 (35.22%), Postives = 68/159 (42.77%), Query Frame = 1 
Query:  523 FPPLSVVGLLPPSCSPEHSCVPNAQLEVTLREKEEEKDTPGNEGLDASDALTATGGGNPSELASALRVGLITLRGVPEGERISAPYVALCQPVEDRRRELSSGSGLGRSGRPSCRAPCECPRCLLEADGDRSCGGEMLKI-----LADQALEEGRHNTA 984
             P L+ + L P +    HSCVPN Q+E  +         PG             GG    E    LRV L+ LR V EGE I+  YV   Q    RRREL    G            C+CPRC LEA    +     LK+     LADQA EE R++ A
Sbjct:  511 LPRLAALALAPGTALLNHSCVPNCQIEARI--------VPG-------------GGDGDDETCGGLRVTLVALRDVAEGEEITTAYVPSNQRYFRRRRELRRRYGFA----------CDCPRCALEASKTSNAPPPNLKVIDWLRLADQAQEEARYDDA 638
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BLAST of mRNA_H-elongata_contig52672.12581.1 vs. uniprot
Match: A0A7R9Y3V3_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y3V3_9VIRI)

HSP 1 Score: 72.0 bits (175), Expect = 3.930e-10
Identity = 63/178 (35.39%), Postives = 79/178 (44.38%), Query Frame = 1 
Query:  487 ATSGAPSHRFSPFPPLSVVGLLPPSCSPEHSCVPNAQLEVT---LREKEEEKDTPGNEGLDASDALTATGGGNPSELASALRVGL--ITLRGVPEGERISAPYVALCQPVEDRRRELSSGSGLGRSGRPSCRAPCECPRCLLEADG-DRSCGGEM--LKILADQALEEGRHNTALGLY 996
            AT  A +    P   +  VGL+PP     HSCVPN QLE     L     E+D           A TA GGG     A   RV +  I LR + EGE ++   VA     E R       + +   G PS   PC C RC  E  G D +  G    +++LAD A EEGRH+ A  L+
Sbjct:  316 ATWSADAASLCPLRGVDAVGLMPPEAEMRHSCVPNCQLEARWEPLLATAAERDA----------AATAAGGGEARYDAFRGRVVVDAIALRDIAEGEELTVAMVATNATAEGR------AAAMAARGLPS---PCGCARCTFERAGRDAAAVGAASDVRLLADLATEEGRHDEAAALH 474
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52672.12581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JE10_9PHAE1.280e-1165.57Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
D8LR24_ECTSI2.100e-1165.00Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
C1MHS0_MICPC1.320e-1035.22Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7R9Y3V3_9VIRI3.930e-1035.39Hypothetical protein n=2 Tax=Prasinoderma colonial... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52672contigH-elongata_contig52672:424..2913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue4.9e-20
Seed eggNOG ortholog2880.D8LR24
EggNOG free text desc.procollagen-lysine 5-dioxygenase activity
EggNOG OGsKOG1971@1,KOG1971@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-06_004630.1
Exons5
Model size1021
Cds size1020
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52672.12581.1prot_H-elongata_contig52672.12581.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52672 424..2913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.5876734-CDS-H-elongata_contig52672:423..5041622930860.5876734-CDS-H-elongata_contig52672:423..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 424..504 -
1691679601.4316661-CDS-H-elongata_contig52672:423..5041691679601.4316661-CDS-H-elongata_contig52672:423..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 424..504 -
1622930860.6069272-CDS-H-elongata_contig52672:974..12221622930860.6069272-CDS-H-elongata_contig52672:974..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 975..1222 -
1691679601.442084-CDS-H-elongata_contig52672:974..12221691679601.442084-CDS-H-elongata_contig52672:974..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 975..1222 -
1622930860.6251223-CDS-H-elongata_contig52672:1609..17941622930860.6251223-CDS-H-elongata_contig52672:1609..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 1610..1794 -
1691679601.450725-CDS-H-elongata_contig52672:1609..17941691679601.450725-CDS-H-elongata_contig52672:1609..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 1610..1794 -
1622930860.6425858-CDS-H-elongata_contig52672:2137..25031622930860.6425858-CDS-H-elongata_contig52672:2137..2503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 2138..2503 -
1691679601.461001-CDS-H-elongata_contig52672:2137..25031691679601.461001-CDS-H-elongata_contig52672:2137..2503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 2138..2503 -
1622930860.6577444-CDS-H-elongata_contig52672:2773..29131622930860.6577444-CDS-H-elongata_contig52672:2773..2913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 2774..2913 -
1691679601.4705515-CDS-H-elongata_contig52672:2773..29131691679601.4705515-CDS-H-elongata_contig52672:2773..2913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52672 2774..2913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52672.12581.1

>prot_H-elongata_contig52672.12581.1 ID=prot_H-elongata_contig52672.12581.1|Name=mRNA_H-elongata_contig52672.12581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
MAYADRAAAPKAEGGAERARTLDFFLRTVRALRRHLAPITVPSPLASYCV
RLFRAADKGAKLRALPLLSPVIESARPNDHGATVERTAAAAKWLVTGDDE
IFSGSASSRDCSCSKGAIGIGTGRKGDGAGAEDRLKPSPDESDAREIAVE
RGLCRLVEAAAAATSGAPSHRFSPFPPLSVVGLLPPSCSPEHSCVPNAQL
EVTLREKEEEKDTPGNEGLDASDALTATGGGNPSELASALRVGLITLRGV
PEGERISAPYVALCQPVEDRRRELSSGSGLGRSGRPSCRAPCECPRCLLE
ADGDRSCGGEMLKILADQALEEGRHNTALGLYRSALAALH
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mRNA from alignment at H-elongata_contig52672:424..2913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52672.12581.1 ID=mRNA_H-elongata_contig52672.12581.1|Name=mRNA_H-elongata_contig52672.12581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2490bp|location=Sequence derived from alignment at H-elongata_contig52672:424..2913- (Himanthalia elongata Himel1 dioecious)
ATGGCCTACGCCGACCGCGCAGCAGCACCAAAGGCGGAGGGGGGCGCCGA
GCGCGCTCGAACCCTTGATTTTTTTTTGAGGACGGTGCGAGCGCTCAGGC
GACATCTGGCGCCGATCACCGTCCCGTCACCGCTGGCGAGGTGAGCGACC
AAAGAGCAAGACTTTTGGCGGAGTTCTTCGTGATTTATTTTCCGGAGGGG
GGCGGGAGGGGGTTGAAGAGCGGGGTTTTTGTTACCCTTTTACGTTTCAG
TATTCGATTATGACATCTTGGATTGATCGATTCGCTGCTGATTTTGATTG
CTCAAAACGCCGGAGTGCCCATCCATCCCCTGTCTTTTATGCCCTTTGTG
CCGTTTGCGTCGATTTCGTGCCGCGGGTTGGGGGTGTCCCTTCTCGTCCC
CCCGAATAAGCTACTGTGTGCGCTTGTTCCGGGCCGCGGACAAGGGCGCC
AAGCTACGCGCGCTTCCGTTGCTATCCCCGGTGATCGAGAGCGCTCGCCC
GAACGACCACGGTGCAACCGTTGAAAGAACGGCTGCTGCAGCAAAGTGGT
TGGTAACGGGCGATGACGAAATATTTTCCGGGAGCGCGTCGTCCCGTGAT
TGCAGTTGCTCGAAAGGGGCGATAGGAATCGGAACGGGAAGGAAAGGTGA
CGGTGCTGGTGCCGAGGATAGGCTCAAACCCTCTCCGGACGAGAGCGATG
CGCGAGAGATCGCCGTTGAACGAGGACTGTGCAGGCTGGTGGAGGCGGCA
GCGGCGGCAACAAGCGGGGCGCCCAGGTAGTTGAGAGGGATATATATATA
TATACTACTATACTATACGGTGCCTGTGCTGTCTCGCTCTCAAGCCGTTG
ACTCGAGGTTGTTTCACAGGGCAGGACGCGACCTCACTCTCCTATACCCC
CATCCACCATCCCCGGCCAACCAGACTCTGATTTTAGTGCTTCACCTTCG
TCGTCGTGTGCATGCTGGAGGACCGTGTTTTCCTGCCTGTCGTCTCTGTT
TATATCTCTCTATGTTTATCTCTCTCTGTTTATCTCTCTCTCTCTCTCTA
ATAATATATAATATATAATATACGGTATACCTCTTGTCGCCCTCTGCCTC
ACGCGCCCTTGGCTCTCAGTCACCGCTTCAGCCCATTCCCCCCACTGTCG
GTGGTCGGGCTCCTCCCTCCTAGCTGCAGCCCGGAGCACAGCTGCGTCCC
GAATGCGCAACTCGAGGTCACCCTTCGGGAAAAGGAGGAAGAGAAGGATA
CCCCGGGAAACGAAGGTCTCGACGCTTCCGATGCCTTGACGGCAACTGGC
GGAGGTGGGGGAAAGCACGTTTTCTCTTGATACAGACCCGTCTGATCTGG
TCTGGTCTGAAAGGAGTAGGGTATGCGTGTGCCGTGGAGTGAGTATATAA
AGAGGTATTTTGCTATTTATAAATAGCACGTGAAACGTTTTGGCCAGCGG
AAGTTCATCTGTCCACATAGACTACGTGTGTACATACCTAAATCTCTTCC
GTCATAACCCCTCTATAACTCAATAACTCGCCCCCCTCCCCCCTGGCCGG
CGAAAACCTGACATCATATCGCTCCCTTCCGGCGTTGTTTGGATGTGTGG
CCTATTAATGTGCCCGTTACGAGACGACATAATTTTAACATAAGTACTCC
ACCCCCTATATCCCTCCAAAACTATACCTGTGATGTGGAAGGAAATCCGT
CCGAGTTGGCGTCGGCCCTTCGAGTGGGTCTCATTACCTTGCGCGGCGTC
CCGGAAGGCGAGAGGATTTCCGCTCCCTACGTCGCGCTATGCCAGCCGGT
GGAAGATCGCCGGAGGGAGCTGTCGTCCGGGTCCGGGCTCGGCAGGAGCG
GTAGACCTTCCTGCCGAGCGCCTTGCGAGTGCCCTCGCTGCCTCTTGGAG
GCCGATGGCGATCGCTCCTGCGGGGGAGAGATGTTGAAGGTACGTCATAC
GTCACGGGAAGCAAGGCGCAACACTGACACGGCCAGGACGATGTTACACC
TGGCTCTGTCAGCCCGCCTAGGGGTGGGTGGGGAGGGGAAACACACATCT
TCACAAAAAGTAACCCCCGAATGGGTTACATGCAGTACTGCATCATAGAA
TGACAAGATTACAAGGTCAGATTGCACGGTTATGTGCAATTGAATACATA
TACTCATGCACACACACAAACATACGCACACAGCTGTATATTTTTTTCTG
TCTTTCTGCTTTTTTTTTTCACCCGGTTGCGCATGTTCAAAAAAGCTTCT
TTAAAGACCCCTCTCCGGCAAAAACGAAGCCATGCCAAGCCACCCGAGCG
ACTGACTCTTACCTGTCGTGCCTCCGATAACAATGTCGAATGCACCGTCC
TGTTCCGCTCCATCGTGTTTTGTTTGGCTGTGTGTTTGATCCTCGATCGC
TCTCAGCAGATTCTGGCGGATCAGGCGCTGGAGGAGGGGCGGCACAACAC
GGCTCTCGGGTTGTACAGGAGCGCACTCGCCGCCTTGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig52672:424..2913-

>mRNA_H-elongata_contig52672.12581.1 ID=mRNA_H-elongata_contig52672.12581.1|Name=mRNA_H-elongata_contig52672.12581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2040bp|location=Sequence derived from alignment at H-elongata_contig52672:424..2913- (Himanthalia elongata Himel1 dioecious)
ATGGCCTACGCCGACCGCGCAGCAGCACCAAAGGCGGAGGGGGGCGCCGA
GCGCGCTCGAACCCTTGATTTTTTTTTGAGGACGGTGCGAGCGCTCAGGC
GACATCTGGCGCCGATCACCGTCCCGTCACCGCTGGCGAGATGGCCTACG
CCGACCGCGCAGCAGCACCAAAGGCGGAGGGGGGCGCCGAGCGCGCTCGA
ACCCTTGATTTTTTTTTGAGGACGGTGCGAGCGCTCAGGCGACATCTGGC
GCCGATCACCGTCCCGTCACCGCTGGCGAGCTACTGTGTGCGCTTGTTCC
GGGCCGCGGACAAGGGCGCCAAGCTACGCGCGCTTCCGTTGCTATCCCCG
GTGATCGAGAGCGCTCGCCCGAACGACCACGGTGCAACCGTTGAAAGAAC
GGCTGCTGCAGCAAAGTGGTTGGTAACGGGCGATGACGAAATATTTTCCG
GGAGCGCGTCGTCCCGTGATTGCAGTTGCTCGAAAGGGGCGATAGGAATC
GGAACGGGAAGGAAAGGTGACGGTGCTGGTGCCGAGGATAGGCTCAAACC
CTCTCCGGACGAGAGCGATGCGCGAGAGATCGCCGTTGAACGAGGACTGT
GCAGGCTGGTGGAGGCGGCAGCGGCGGCAACAAGCGGGGCGCCCAGCTAC
TGTGTGCGCTTGTTCCGGGCCGCGGACAAGGGCGCCAAGCTACGCGCGCT
TCCGTTGCTATCCCCGGTGATCGAGAGCGCTCGCCCGAACGACCACGGTG
CAACCGTTGAAAGAACGGCTGCTGCAGCAAAGTGGTTGGTAACGGGCGAT
GACGAAATATTTTCCGGGAGCGCGTCGTCCCGTGATTGCAGTTGCTCGAA
AGGGGCGATAGGAATCGGAACGGGAAGGAAAGGTGACGGTGCTGGTGCCG
AGGATAGGCTCAAACCCTCTCCGGACGAGAGCGATGCGCGAGAGATCGCC
GTTGAACGAGGACTGTGCAGGCTGGTGGAGGCGGCAGCGGCGGCAACAAG
CGGGGCGCCCAGTCACCGCTTCAGCCCATTCCCCCCACTGTCGGTGGTCG
GGCTCCTCCCTCCTAGCTGCAGCCCGGAGCACAGCTGCGTCCCGAATGCG
CAACTCGAGGTCACCCTTCGGGAAAAGGAGGAAGAGAAGGATACCCCGGG
AAACGAAGGTCTCGACGCTTCCGATGCCTTGACGGCAACTGGCGGAGTCA
CCGCTTCAGCCCATTCCCCCCACTGTCGGTGGTCGGGCTCCTCCCTCCTA
GCTGCAGCCCGGAGCACAGCTGCGTCCCGAATGCGCAACTCGAGGTCACC
CTTCGGGAAAAGGAGGAAGAGAAGGATACCCCGGGAAACGAAGGTCTCGA
CGCTTCCGATGCCTTGACGGCAACTGGCGGAGGAAATCCGTCCGAGTTGG
CGTCGGCCCTTCGAGTGGGTCTCATTACCTTGCGCGGCGTCCCGGAAGGC
GAGAGGATTTCCGCTCCCTACGTCGCGCTATGCCAGCCGGTGGAAGATCG
CCGGAGGGAGCTGTCGTCCGGGTCCGGGCTCGGCAGGAGCGGTAGACCTT
CCTGCCGAGCGCCTTGCGAGTGCCCTCGCTGCCTCTTGGAGGCCGATGGC
GATCGCTCCTGCGGGGGAGAGATGTTGAAGGAAATCCGTCCGAGTTGGCG
TCGGCCCTTCGAGTGGGTCTCATTACCTTGCGCGGCGTCCCGGAAGGCGA
GAGGATTTCCGCTCCCTACGTCGCGCTATGCCAGCCGGTGGAAGATCGCC
GGAGGGAGCTGTCGTCCGGGTCCGGGCTCGGCAGGAGCGGTAGACCTTCC
TGCCGAGCGCCTTGCGAGTGCCCTCGCTGCCTCTTGGAGGCCGATGGCGA
TCGCTCCTGCGGGGGAGAGATGTTGAAGATTCTGGCGGATCAGGCGCTGG
AGGAGGGGCGGCACAACACGGCTCTCGGGTTGTACAGGAGCGCACTCGCC
GCCTTGCACATTCTGGCGGATCAGGCGCTGGAGGAGGGGCGGCACAACAC
GGCTCTCGGGTTGTACAGGAGCGCACTCGCCGCCTTGCAC
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