mRNA_H-elongata_contig52647.12577.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52647.12577.1
Unique NamemRNA_H-elongata_contig52647.12577.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52647.12577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52647contigH-elongata_contig52647:2784..3748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size242
Cds size132
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52647.12577.1prot_H-elongata_contig52647.12577.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52647 2892..3748 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.1424823-UTR-H-elongata_contig52647:2783..28911622930860.1424823-UTR-H-elongata_contig52647:2783..2891Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52647 2784..2891 -
1691679601.2184105-UTR-H-elongata_contig52647:2783..28911691679601.2184105-UTR-H-elongata_contig52647:2783..2891Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52647 2784..2891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.1566727-CDS-H-elongata_contig52647:2891..29581622930860.1566727-CDS-H-elongata_contig52647:2891..2958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52647 2892..2958 -
1691679601.2295527-CDS-H-elongata_contig52647:2891..29581691679601.2295527-CDS-H-elongata_contig52647:2891..2958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52647 2892..2958 -
1622930860.17075-CDS-H-elongata_contig52647:3683..37481622930860.17075-CDS-H-elongata_contig52647:3683..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52647 3684..3748 -
1691679601.240319-CDS-H-elongata_contig52647:3683..37481691679601.240319-CDS-H-elongata_contig52647:3683..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52647 3684..3748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52647.12577.1

>prot_H-elongata_contig52647.12577.1 ID=prot_H-elongata_contig52647.12577.1|Name=mRNA_H-elongata_contig52647.12577.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
KVAVDRDVIRLALRFLVPRKESVSCCMTASARSCRRLQTSIEK*
back to top

mRNA from alignment at H-elongata_contig52647:2784..3748-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52647.12577.1 ID=mRNA_H-elongata_contig52647.12577.1|Name=mRNA_H-elongata_contig52647.12577.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig52647:2784..3748- (Himanthalia elongata Himel1 dioecious)
AAAGTTGCGGTCGATCGTGATGTAATAAGACTCGCTCTCCGCTTTCTTGT
GCCCAGGAAAGAAAGGTAAAGAACGCCGCGCAGCCATATCTTCATCAAAC
ATAGTTATTCTGTCGTCAGAGTACAGTATTAACTTGACGATGTTTTGGGG
TGTTGTTATTGGATAGCTCGGGATTGCTGTTGTGTGGCGCTGAAGTCAGT
ACCGCCATGATATTCTCGTAGCTGCTGCTGCTGCTGCTGTTGACGTGAGA
ATTGTGCGCCCACTCATATCGTAATTGGAATATGCTGTGGTCTGATGCGC
GTTTTCCTTGTGCATGGAGAACTGAAGGAGGGCTAGGCAGTCAGCCACCT
CGACGGACCGCTGCAATACAAAAAAAATGCCACCCAAACTCTGTGTTGAA
CATATTACTTGGAAATAAATGTATACTGTAGGAAATGCATGCTTTGGGGC
TTCACCGCGCAAGGCGGCGCTGACGGCTCTGTGTTGTCTCTAATGCGTCC
CCACCACATACATTTATATGTCCCATCGACCTAGGTGTTATACTCTCCAT
TTTATACCCCGTGATGGAGGGAGGGAAGGCTTTAGTATAATCATTTCGCT
GTATTATTATAAACCCTTCCACTAGATACGCTACCCTATGGCTTACGTCG
CAAAAGTAATGCCTTACCAGGTGCTAAACTTCGTGTGAACGTCAACATAG
AACGCTGAGGCTTTTCCCGGATGCTATTTTGCTGTAATTTCATGTCACCG
CCGCCGCGACCGACACCTTTTTCCTGGGCGCACGCTTCAGCGTCAGTTGT
TGCATGACGGCAAGCGCTCGTTCGTGTCGTAGGCTACAAACATCAATCGA
GAAGTAACAGCACGGGAACACGGTACAATCCCGCTGCAGCCGGCAGCAAT
GATCGCGTCAACGTTTGCGGGCTTCAGCGAGCAGGAGGCACTGTTAGAAC
TTTCATCCACCGACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52647:2784..3748-

>mRNA_H-elongata_contig52647.12577.1 ID=mRNA_H-elongata_contig52647.12577.1|Name=mRNA_H-elongata_contig52647.12577.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig52647:2784..3748- (Himanthalia elongata Himel1 dioecious)
AAAGTTGCGGTCGATCGTGATGTAATAAGACTCGCTCTCCGCTTTCTTGT
GCCCAGGAAAGAAAGAAAGTTGCGGTCGATCGTGATGTAATAAGACTCGC
TCTCCGCTTTCTTGTGCCCAGGAAAGAAAGCGTCAGTTGTTGCATGACGG
CAAGCGCTCGTTCGTGTCGTAGGCTACAAACATCAATCGAGAAGTAACGT
CAGTTGTTGCATGACGGCAAGCGCTCGTTCGTGTCGTAGGCTACAAACAT
CAATCGAGAAGTAA
back to top