mRNA_H-elongata_contig52640.12574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52640.12574.1
Unique NamemRNA_H-elongata_contig52640.12574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52640.12574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52640contigH-elongata_contig52640:985..3184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size419
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52640.12574.1prot_H-elongata_contig52640.12574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52640 985..3184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.8611364-CDS-H-elongata_contig52640:984..11401622930859.8611364-CDS-H-elongata_contig52640:984..1140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52640 985..1140 -
1691679601.1090257-CDS-H-elongata_contig52640:984..11401691679601.1090257-CDS-H-elongata_contig52640:984..1140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52640 985..1140 -
1622930859.8778036-CDS-H-elongata_contig52640:2285..24621622930859.8778036-CDS-H-elongata_contig52640:2285..2462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52640 2286..2462 -
1691679601.118305-CDS-H-elongata_contig52640:2285..24621691679601.118305-CDS-H-elongata_contig52640:2285..2462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52640 2286..2462 -
1622930859.8985126-CDS-H-elongata_contig52640:3100..31841622930859.8985126-CDS-H-elongata_contig52640:3100..3184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52640 3101..3184 -
1691679601.1301053-CDS-H-elongata_contig52640:3100..31841691679601.1301053-CDS-H-elongata_contig52640:3100..3184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52640 3101..3184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52640.12574.1

>prot_H-elongata_contig52640.12574.1 ID=prot_H-elongata_contig52640.12574.1|Name=mRNA_H-elongata_contig52640.12574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
DDSENDFAALQRADRGGDDEIFWPTMAVPPDHTGLKGRRGYRWVRPISVD
SVDGSDSPSWLDASCSEGLSDSTFNRSEAKDTARRRAAQNHRHRILNDNS
VSPFLGDELSVERNDYIVGPFDGARASDGASDGIDIATP
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mRNA from alignment at H-elongata_contig52640:985..3184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52640.12574.1 ID=mRNA_H-elongata_contig52640.12574.1|Name=mRNA_H-elongata_contig52640.12574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2200bp|location=Sequence derived from alignment at H-elongata_contig52640:985..3184- (Himanthalia elongata Himel1 dioecious)
GACGACAGCGAAAACGATTTTGCGGCCCTTCAACGCGCCGATCGGGGCGG
TGACGACGAGATATTCTGGCCGACCATGGCAGTGGTGAGATCCCCTACAC
TCGTTCTCCACAATGTTTGCCCCGTATTCCACGTTTAAACTGCATCGACA
AATTATACCGGTATACAATCTTCAATGCTTACCAGCTCCACAATGATGTA
GAGTAATATTGCATTTAGCAGAGAATCCTTCTACTTGCGAGCCTTGGTGT
TGCGAGCACGGTGACCGCCGGCGGCATGAGCTGTTTGTTCGGCATGGGCT
TGAGAACATAACGGCGTTCGACGGGCGGTATCGGGTCTGCACTGGGAAGA
ATTGTAGCTCTCTTCATCTAAAGCAATCGCGTTCCCCTAATGACAGTCGG
AGGGCCTATAGCACACCAGCACTATTAGAGCTTGTTCAAAGGCCAGAAGA
TGTCTCCAAGCGTGCTCAGATAGTGGAAAATGAGGGGGAAAGAGGGCTGC
GGGCGGGGGGAAGAGGGTACTACTTCCTCCGTCATGTCGTTGTAGCTGGG
GTTGCAGAGCAAAATACCGTTTTTTCTCACATCTACTGTTTTGCCCTTCT
CCCGCCCTCGATCTTAATTCGCCCTTCTCCCCCCCCCCCCCATACACACG
GCAACTAACCACTCAATTTTGATACCACCCGAAACCCCTCCTCGAACTAC
CCACAACGAACGGGGACGGCAGCCGCCCGATCATACCGGTCTGAAAGGAA
GGCGAGGGTATCGTTGGGTGAGACCGATCTCGGTAGATTCCGTGGACGGC
TCAGACAGCCCATCCTGGCTCGATGCCTCTTGCAGCGAGGGGCTATCGGA
TTCCACATTTAACCGGAGTGAAGCAAAAGACACGGCCAGACGACGAGCGG
TGAGTTTCGCTATTTTTGTCCTCCGTAGTACGGAGAATGTCGTGAATCGC
AATAAAGCAAACGGTTACCCTGGAGGGTCTCGAAGGGATTCAAAAGCTAG
CCAAGGGCCCGCCAATATTATTTTGGGACGTGAATTGATTGCTCTCTCCT
AGAGTTCTTCCGCCATTCCCCGGCTCGAACACTACAATCTCCAACGGATT
TTTTATTGTAAACGTTCGCACACTCGGGCAAACGAGACTAACAGCAGATA
ACACATTAGTATTAGTAATAGTATTAGTAATAGTAGTAGTAATATATATA
TATATAATCTTTTGGGTTGATACGTAAGTCTGCATCGGACCTGAGAAGCA
ATTGCGAGTAGGTCTCCAGCGGGGGGGGGGAGATGCGAGACATTGTGTAA
ATACTATTTCGGAATAGAGTGGAGAGAATGACCGTCGGGCAACATCCTGC
GTCTGTTTCCGGGCATGTTTCCGGTAGATATACCGCTAGCGGCGTTTGCG
GTAGATGTACCGCCGGGCGAGCGTGCATTGTTTTGTACGAGTAGTGTCTT
GGGTTGCCATCCCCCCCCCCCCCACACACACACACAATTAAGCTCTATAT
TTCTTATCGTTTGGGATAGCTCCACGCGGGGCGGGGCGGAACTATACAAT
ATCTCATTAGAAGAACACCCAACAAATTGAATGAAATCGCGGACTATCTA
TCGGTAATGTTCTCACAGAGGACACGATTGACTCGATTCTCTTGTCAACG
ACGAAAAAACGAGACTCCGCATACGGCGACAACTTCCCGGAGTACAGTCA
GCAATATCAGCGGAAACAAACCACCCATGGAATGTTATTCTTAAAGATCC
CCTGTCTCTCCCCCTAGCGTTCCGAGTATTTTTCTATCCCGTATTCTTAC
GAACCTGAACCTTTGTTTATCGAAGAAGAAAAATATAGAGACAGACGTAG
CGTGTTTTTTTGCAAACCCTGGCAATCTCAGGCGGTATAGGATCGCAATT
ATTATGCACGTGATCTTTACGCCTTTCACCATTCCGGAGTGTCCCAAAAC
TCTATCACGCTATTCCCGCCTTCCTCCTCCTCCCCTACCGCTTTACTGGG
CCTCACCTGACGAATACTGAATGTCCACAAAACCTATTGTTCAGGCACAG
AACCACAGGCACCGCATCCTCAACGACAACAGTGTATCTCCCTTCCTCGG
TGATGAGCTTTCCGTAGAGCGTAACGACTACATTGTTGGTCCCTTTGACG
GGGCGCGCGCTTCCGATGGTGCTTCCGACGGGATCGACATTGCCACCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig52640:985..3184-

>mRNA_H-elongata_contig52640.12574.1 ID=mRNA_H-elongata_contig52640.12574.1|Name=mRNA_H-elongata_contig52640.12574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig52640:985..3184- (Himanthalia elongata Himel1 dioecious)
GACGACAGCGAAAACGATTTTGCGGCCCTTCAACGCGCCGATCGGGGCGG
TGACGACGAGATATTCTGGCCGACCATGGCAGTGGACGACAGCGAAAACG
ATTTTGCGGCCCTTCAACGCGCCGATCGGGGCGGTGACGACGAGATATTC
TGGCCGACCATGGCAGTGCCGCCCGATCATACCGGTCTGAAAGGAAGGCG
AGGGTATCGTTGGGTGAGACCGATCTCGGTAGATTCCGTGGACGGCTCAG
ACAGCCCATCCTGGCTCGATGCCTCTTGCAGCGAGGGGCTATCGGATTCC
ACATTTAACCGGAGTGAAGCAAAAGACACGGCCAGACGACGAGCGCCGCC
CGATCATACCGGTCTGAAAGGAAGGCGAGGGTATCGTTGGGTGAGACCGA
TCTCGGTAGATTCCGTGGACGGCTCAGACAGCCCATCCTGGCTCGATGCC
TCTTGCAGCGAGGGGCTATCGGATTCCACATTTAACCGGAGTGAAGCAAA
AGACACGGCCAGACGACGAGCGGCACAGAACCACAGGCACCGCATCCTCA
ACGACAACAGTGTATCTCCCTTCCTCGGTGATGAGCTTTCCGTAGAGCGT
AACGACTACATTGTTGGTCCCTTTGACGGGGCGCGCGCTTCCGATGGTGC
TTCCGACGGGATCGACATTGCCACCCCCGCACAGAACCACAGGCACCGCA
TCCTCAACGACAACAGTGTATCTCCCTTCCTCGGTGATGAGCTTTCCGTA
GAGCGTAACGACTACATTGTTGGTCCCTTTGACGGGGCGCGCGCTTCCGA
TGGTGCTTCCGACGGGATCGACATTGCCACCCCC
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