mRNA_H-elongata_contig52637.12573.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52637.12573.1
Unique NamemRNA_H-elongata_contig52637.12573.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5L8K3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8K3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.350e-13
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    4 SRY-VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            SRY +MFVDSAS +QR YG W KS ++ F  ++RF+A   GMG P  FR DNG E T S    +C+  GIR E TA
Sbjct:   61 SRYLIMFVDSASRWQRGYGMWAKSDTLKF--MQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTA 134
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5KGD5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.140e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   13 VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            VMFVDSAS +QR YG   KS ++ F  V+RF+A   GMG P  FR DNG E T S +  +C+  GIR E TA
Sbjct:   47 VMFVDSASRWQRGYGMRAKSDTLKF--VQRFLADMNGMGTPGCFRMDNGGEFTGSALTSFCDAAGIRREYTA 116
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5KQG9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.410e-11
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    4 SRY-VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            SRY +MFVDSAS +QR YG   KS ++ F  V+RF+A   GMG P  FR DNG E T S  + +C+  GIR E TA
Sbjct:  169 SRYLIMFVDSASRWQRGYGMRAKSDTLKF--VQRFLADMNGMGTPGCFRMDNGGEFTGSAFSSFCDAAGIRREYTA 242
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5KI14_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI14_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.670e-11
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    4 SRY-VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            SRY +MFVDSAS +QR YG   KS ++ F  V+RF+A   GMG P  FR DNG E T S    +C+  GIR E TA
Sbjct:   61 SRYLIMFVDSASRWQRGYGMRAKSDTLKF--VQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREHTA 134
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5K469_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K469_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.130e-11
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    4 SRY-VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            SRY +MFVDSAS +QR YG   KS ++ F  V+RF+A   GMG P  FR DNG E T S    +C+  GIR E TA
Sbjct:   61 SRYLIMFVDSASRWQRGYGMRAKSDTLKF--VQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTA 134
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5JIT1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.250e-11
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    4 SRY-VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            SRY +MFVDSAS +QR YG   KS ++ F  V+RF+A   GMG P  FR DNG E T S    +C+  GIR E TA
Sbjct:   61 SRYLIMFVDSASRWQRGYGMRAKSDTLKF--VQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTA 134
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5JD95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD95_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.250e-11
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    4 SRY-VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            SRY +MFVDSAS +QR YG   KS ++ +  VKRF+A   GMG P  FR DNG E T +   ++C+  GIR E TA
Sbjct:  127 SRYLIMFVDSASRWQRAYGMRAKSDTLKY--VKRFLADMNGMGTPGCFRMDNGGEFTGAAFIEFCDAAGIRREYTA 200
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5JS38_9PHAE (Integrase catalytic domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS38_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.260e-11
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    4 SRY-VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            SRY +MFVDSAS +QR YG   KS ++ F  V+RF+A   GMG P  FR DNG E T S    +C+  GIR E TA
Sbjct:  169 SRYLIMFVDSASRWQRGYGMRAKSDTLKF--VQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTA 242
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5JVR6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.310e-11
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    4 SRY-VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            SRY +MF+DSAS +QR YG   KS ++ F  V+RF+A   G+G P  FR DNG E   ST   +C+  GIR E TA
Sbjct:   46 SRYLIMFLDSASRWQRGYGMRAKSDTLKF--VQRFLADMNGIGTPGCFRMDNGGEFIGSTFTSFCDAAGIRREYTA 119
[Close]
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Match: A0A6H5JIE5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.890e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:   13 VMFVDSASCFQRPYGTWDKSVSVIFDVVKRFVA---GMGIPRAFRTDNGAESTNSTVADYCNCLGIRHELTA 219
            +MFVDSAS +QR YG   KS ++ F  V+RF+A   GMG P  FR DNG E T S    +C+  GIR E TA
Sbjct:   65 IMFVDSASRWQRGYGMRAKSDTLKF--VQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTA 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52637.12573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8K3_9PHAE5.350e-1352.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGD5_9PHAE6.140e-1252.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQG9_9PHAE1.410e-1152.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KI14_9PHAE1.670e-1152.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K469_9PHAE2.130e-1152.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIT1_9PHAE2.250e-1152.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JD95_9PHAE2.250e-1151.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JS38_9PHAE2.260e-1152.63Integrase catalytic domain-containing protein n=4 ... [more]
A0A6H5JVR6_9PHAE2.310e-1150.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JIE5_9PHAE2.890e-1151.39Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52637contigH-elongata_contig52637:2918..3142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.7790082-CDS-H-elongata_contig52637:2917..31271622930859.7790082-CDS-H-elongata_contig52637:2917..3127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52637 2918..3127 -
1691679601.0891745-CDS-H-elongata_contig52637:2917..31271691679601.0891745-CDS-H-elongata_contig52637:2917..3127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52637 2918..3127 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.8032687-UTR-H-elongata_contig52637:3127..31421622930859.8032687-UTR-H-elongata_contig52637:3127..3142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52637 3128..3142 -
1691679601.098954-UTR-H-elongata_contig52637:3127..31421691679601.098954-UTR-H-elongata_contig52637:3127..3142Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52637 3128..3142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52637.12573.1prot_H-elongata_contig52637.12573.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52637 2918..3127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52637.12573.1

>prot_H-elongata_contig52637.12573.1 ID=prot_H-elongata_contig52637.12573.1|Name=mRNA_H-elongata_contig52637.12573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MFVDSASCFQRPYGTWDKSVSVIFDVVKRFVAGMGIPRAFRTDNGAESTN
STVADYCNCLGIRHELTAL*
back to top

mRNA from alignment at H-elongata_contig52637:2918..3142-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52637.12573.1 ID=mRNA_H-elongata_contig52637.12573.1|Name=mRNA_H-elongata_contig52637.12573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig52637:2918..3142- (Himanthalia elongata Himel1 dioecious)
GACTCGCGATATGTTATGTTTGTGGACAGTGCTTCATGCTTCCAGCGCCC
GTATGGGACCTGGGACAAGAGCGTATCCGTTATTTTCGATGTGGTGAAAC
GTTTCGTGGCTGGCATGGGAATCCCGCGAGCGTTTAGGACCGACAACGGT
GCCGAGTCCACCAACTCGACGGTCGCTGATTACTGCAACTGTCTCGGAAT
CCGCCACGAATTAACGGCTTTATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52637:2918..3142-

>mRNA_H-elongata_contig52637.12573.1 ID=mRNA_H-elongata_contig52637.12573.1|Name=mRNA_H-elongata_contig52637.12573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig52637:2918..3142- (Himanthalia elongata Himel1 dioecious)
ATGTTTGTGGACAGTGCTTCATGCTTCCAGCGCCCGTATGGGACCTGGGA
CAAGAGCGTATCCGTTATTTTCGATGTGGTGAAACGTTTCGTGGCTGGCA
TGGGAATCCCGCGAGCGTTTAGGACCGACAACGGTGCCGAGTCCACCAAC
TCGACGGTCGCTGATTACTGCAACTGTCTCGGAATCCGCCACGAATTAAC
GGCTTTATAAATGTTTGTGGACAGTGCTTCATGCTTCCAGCGCCCGTATG
GGACCTGGGACAAGAGCGTATCCGTTATTTTCGATGTGGTGAAACGTTTC
GTGGCTGGCATGGGAATCCCGCGAGCGTTTAGGACCGACAACGGTGCCGA
GTCCACCAACTCGACGGTCGCTGATTACTGCAACTGTCTCGGAATCCGCC
ACGAATTAACGGCTTTATAA
back to top