mRNA_H-elongata_contig52625.12570.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52625.12570.1
Unique NamemRNA_H-elongata_contig52625.12570.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52625.12570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52625contigH-elongata_contig52625:2005..2549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size547
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.612936-CDS-H-elongata_contig52625:2004..25471622930859.612936-CDS-H-elongata_contig52625:2004..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52625 2005..2547 +
1691679601.0208738-CDS-H-elongata_contig52625:2004..25471691679601.0208738-CDS-H-elongata_contig52625:2004..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52625 2005..2547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52625.12570.1prot_H-elongata_contig52625.12570.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52625 2005..2547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52625.12570.1

>prot_H-elongata_contig52625.12570.1 ID=prot_H-elongata_contig52625.12570.1|Name=mRNA_H-elongata_contig52625.12570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
QLSQSTRLHHLWQWKWRPNAHGMDRQVRRRQRRHVDPGKEHYLPPDIQHQ
LGFCSRPPPSLKLLSPPLPPPLPTPRKPRWDFRARCHRRSRPSTQALAGD
VRRYGFPGDQRHVSLIGWSIAFPRYRFRLHCHPHRCCRGLCNRDLGRHYL
AWHRCRTALVPLPLPRAVDATGFDGAAVLVG
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mRNA from alignment at H-elongata_contig52625:2005..2549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52625.12570.1 ID=mRNA_H-elongata_contig52625.12570.1|Name=mRNA_H-elongata_contig52625.12570.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=545bp|location=Sequence derived from alignment at H-elongata_contig52625:2005..2549+ (Himanthalia elongata Himel1 dioecious)
CAACTTTCCCAATCGACCCGACTCCACCATCTGTGGCAGTGGAAGTGGCG
ACCAAACGCTCACGGGATGGACCGCCAAGTCCGCCGCCGTCAACGCCGTC
ATGTTGATCCTGGGAAAGAACACTATCTGCCTCCAGACATTCAACACCAG
TTGGGATTTTGCTCTCGTCCTCCACCCTCGCTGAAACTTCTGTCCCCCCC
GCTCCCGCCGCCGCTTCCAACGCCAAGAAAACCTCGTTGGGATTTTCGGG
CGCGATGTCATCGACGCTCGCGCCCATCGACCCAAGCGCTTGCCGGGGAT
GTGCGACGGTACGGGTTTCCAGGGGATCAGAGGCATGTAAGCTTGATCGG
CTGGTCGATCGCGTTCCCGCGCTACAGGTTTCGCCTCCACTGCCACCCTC
ATCGCTGCTGCCGCGGCCTCTGCAATCGCGACCTCGGCCGCCATTACCTT
GCCTGGCACCGATGCAGAACAGCGCTAGTGCCGTTGCCGTTGCCGAGGGC
TGTAGATGCCACCGGCTTTGATGGCGCCGCAGTCCTTGTCGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig52625:2005..2549+

>mRNA_H-elongata_contig52625.12570.1 ID=mRNA_H-elongata_contig52625.12570.1|Name=mRNA_H-elongata_contig52625.12570.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig52625:2005..2549+ (Himanthalia elongata Himel1 dioecious)
CAACTTTCCCAATCGACCCGACTCCACCATCTGTGGCAGTGGAAGTGGCG
ACCAAACGCTCACGGGATGGACCGCCAAGTCCGCCGCCGTCAACGCCGTC
ATGTTGATCCTGGGAAAGAACACTATCTGCCTCCAGACATTCAACACCAG
TTGGGATTTTGCTCTCGTCCTCCACCCTCGCTGAAACTTCTGTCCCCCCC
GCTCCCGCCGCCGCTTCCAACGCCAAGAAAACCTCGTTGGGATTTTCGGG
CGCGATGTCATCGACGCTCGCGCCCATCGACCCAAGCGCTTGCCGGGGAT
GTGCGACGGTACGGGTTTCCAGGGGATCAGAGGCATGTAAGCTTGATCGG
CTGGTCGATCGCGTTCCCGCGCTACAGGTTTCGCCTCCACTGCCACCCTC
ATCGCTGCTGCCGCGGCCTCTGCAATCGCGACCTCGGCCGCCATTACCTT
GCCTGGCACCGATGCAGAACAGCGCTAGTGCCGTTGCCGTTGCCGAGGGC
TGTAGATGCCACCGGCTTTGATGGCGCCGCAGTCCTTGTCGGGCAACTTT
CCCAATCGACCCGACTCCACCATCTGTGGCAGTGGAAGTGGCGACCAAAC
GCTCACGGGATGGACCGCCAAGTCCGCCGCCGTCAACGCCGTCATGTTGA
TCCTGGGAAAGAACACTATCTGCCTCCAGACATTCAACACCAGTTGGGAT
TTTGCTCTCGTCCTCCACCCTCGCTGAAACTTCTGTCCCCCCCGCTCCCG
CCGCCGCTTCCAACGCCAAGAAAACCTCGTTGGGATTTTCGGGCGCGATG
TCATCGACGCTCGCGCCCATCGACCCAAGCGCTTGCCGGGGATGTGCGAC
GGTACGGGTTTCCAGGGGATCAGAGGCATGTAAGCTTGATCGGCTGGTCG
ATCGCGTTCCCGCGCTACAGGTTTCGCCTCCACTGCCACCCTCATCGCTG
CTGCCGCGGCCTCTGCAATCGCGACCTCGGCCGCCATTACCTTGCCTGGC
ACCGATGCAGAACAGCGCTAGTGCCGTTGCCGTTGCCGAGGGCTGTAGAT
GCCACCGGCTTTGATGGCGCCGCAGTCCTTGTCGGG
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