mRNA_H-elongata_contig52616.12568.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE) HSP 1 Score: 164 bits (415), Expect = 6.660e-41 Identity = 113/294 (38.44%), Postives = 151/294 (51.36%), Query Frame = 1
Query: 442 EQIMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPH--------------------LPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRFKPVVSSPVA------SAVVDTAG----PPGGVG---IATPKQPSPGAHGSSSSSASTAVGVPVAAANTKGDSLSEVGSKFLVESEGGVSEQSGWTEIGMRG-------------------------------GGVSFVKLTTPVSIPKELDLERFCTNHTANAPDDELGEVILSM 1131
E++MPTTRHFHAEVE TLTCT+C+YSRRR+ELYRDFSLD+P +L LLD FF+ SEL+LRCERC +D+VR EHSLA+LPGAL+LH+KRFKPV S+P + VVD++ P G ++ P G S++ + A + A+ + D+ G VE+ G GGVS+VKL +PVS+P ELDLERFC+ +T NAP ++LG+ + S+
Sbjct: 738 ERLMPTTRHFHAEVEATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXDGGVSELGDLLDNFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHIKRFKPVASAPPPQLPPPKAKVVDSSSEAKLPVAGSAESPLSLPXXXXXXXVGRPSTAPAGAFAI-AGVASPEDDA----GCATAVEAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGGVSYVKLASPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSL 1026
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI) HSP 1 Score: 153 bits (387), Expect = 3.450e-37 Identity = 109/305 (35.74%), Postives = 141/305 (46.23%), Query Frame = 1
Query: 397 QGGQADSSNERRSPSEQIMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPH----------------------LPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRFKPVVS----------------------SPVASAV---------------VDTAGPPGGVGIATPKQPSPGAHGSSSSSASTAVGVPVAAANTKGDSLSEVGSKFLVESEGGVSEQSGWTEIGMRG-GGVSFVKLTTPVSIPKELDLERFCTNHTANAPDDELGEVILSM 1131
+GG+ D E E++MPTTRHFHAEVE TLTCT+C+YSRRR+ELYRDFSLD+P L LLD FF+ SEL+LRCERC +D+VR EHSLA+LPGAL+LH+KRFKP S SPVA + + AG G+ +P+ + R GGVS+VKL++PVS+P ELDLERFC+ +T NAP ++LG+ + S+
Sbjct: 625 EGGRED--EEALRQKERLMPTTRHFHAEVEATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXXXDGGVSGLGDLLDSFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHVKRFKPAASAXXXXXXXXXXXXXXXXASEATSPVAGSXXXXXXXXXXXXGRSSIAPAGASATAGVPSPEDDAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGGVSYVKLSSPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSL 927
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.890e-14 Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 448 IMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDI---------PHLPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHS-LAQLPGALILHMKRFK 741
++P+ R FHAEV+++L C C Y+RRR E Y DFSLD+ ++ LS LL FF +L L CERCD+ + H + LPG L+LH+KRF+
Sbjct: 618 LLPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLDVVGGGGSXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFR 725
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: A0A7S0K999_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K999_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.160e-12 Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query: 433 SPSEQIMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPHLPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRFK 741
SPS + PT R+F EVEV+LTC C Y+R RKELYR SLD+ G + + + FF +L L+CE+C D + +++L L+LH+KRF+
Sbjct: 370 SPS--LFPTQRNFATEVEVSLTCCSCMYTRTRKELYRHLSLDVV----GNSSSPSVIEDGIRRFFSPQKLCLKCEKCFCDSAIQKMEISKLSNGLLLHLKRFE 466
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: A0A139AWQ4_GONPJ (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AWQ4_GONPJ) HSP 1 Score: 74.7 bits (182), Expect = 8.400e-11 Identity = 33/98 (33.67%), Postives = 55/98 (56.12%), Query Frame = 1
Query: 454 PTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPHLPEGEGENALDLS--GLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRFK 741
P +F E E L+C C RR+KE++RD SLD+P N + +S LL FFK L +CE C +++ + ++++P L++H+KR++
Sbjct: 519 PVVENFEWEAETVLSCAECGLERRKKEVFRDISLDLPQFKFTRTRNGIGISIRHLLHLFFKVETLYYKCETCPSEKAFAKRRISRVPRVLLVHIKRYQ 616
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: A0A6J0CMF7_PERMB (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Peromyscus TaxID=10040 RepID=A0A6J0CMF7_PERMB) HSP 1 Score: 64.7 bits (156), Expect = 1.390e-7 Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 448 IMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPHLPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRF 738
I P +F E+ +L C C + RKE S++IP +G N L + D FFKA EL RCERC +++ H ++LP +I+H+KR+
Sbjct: 426 ICPVANNFEFELLRSLFCKGCGLAVIRKEPSSYLSINIP---QGLKGNNLSIQSSFDLFFKAEELEHRCERCIHNKSIALHKFSRLPRVIIIHLKRY 519
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: D4A5S1_RAT (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Tetrapoda TaxID=32523 RepID=D4A5S1_RAT) HSP 1 Score: 63.2 bits (152), Expect = 4.300e-7 Identity = 31/97 (31.96%), Postives = 53/97 (54.64%), Query Frame = 1
Query: 448 IMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPHLPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRF 738
+ P T +F E+ ++ C C + ++E R S++IP +G + + + LD FF+A EL RCERC ++ H +LP +I+H+KR+
Sbjct: 424 VCPVTNNFEFELLSSIFCKACGLTVFKREPSRYLSINIP---QGMKDQNMSIQSSLDLFFRAEELEHRCERCLYNKSVALHKFGRLPRVIIVHLKRY 517
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: A0A1U7RC27_MESAU (Ubiquitinyl hydrolase 1 n=1 Tax=Mesocricetus auratus TaxID=10036 RepID=A0A1U7RC27_MESAU) HSP 1 Score: 62.8 bits (151), Expect = 5.770e-7 Identity = 32/97 (32.99%), Postives = 50/97 (51.55%), Query Frame = 1
Query: 448 IMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPHLPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRF 738
+ P +F E+ ++ C C + +KE S++IP +G+ L + D FFKA EL RCERC +++ H LP +ILH+KR+
Sbjct: 428 VCPVANNFEFELTRSIFCKGCGLAVFKKEQSSYLSINIPQGMKGQN---LSIQSSFDCFFKAEELEHRCERCMHNRSIALHRFGSLPRVIILHLKRY 521
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: UPI00167F87BE (ubiquitin carboxyl-terminal hydrolase 26 n=1 Tax=Onychomys torridus TaxID=38674 RepID=UPI00167F87BE) HSP 1 Score: 62.4 bits (150), Expect = 7.630e-7 Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 1
Query: 448 IMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPHLPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRF 738
+ P +F E+ ++ C C + RKE S++IP +G L + D FFKA EL RCERC +D H ++LP +I+H+KR+
Sbjct: 427 VCPVANNFEFELLRSIFCKGCGLAVLRKEPSCYLSINIPQGLKGHN---LSIQSSFDLFFKAEELEHRCERCMHDTSIALHKFSRLPRVIIIHLKRY 520
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Match: UPI000B4F8F07 (ubiquitin carboxyl-terminal hydrolase 26-like n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F8F07) HSP 1 Score: 62.0 bits (149), Expect = 1.010e-6 Identity = 29/97 (29.90%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 448 IMPTTRHFHAEVEVTLTCTRCAYSRRRKELYRDFSLDIPHLPEGEGENALDLSGLLDGFFKASELNLRCERCDNDQVRVEHSLAQLPGALILHMKRF 738
+ P +F E+ ++ C C + ++E S++IP +G+ + L + D FF+A E+ RCERC +++ H QLP +I+H+KR+
Sbjct: 419 VCPVANNFEFELLSSIFCKACGLTVFKREPSSFLSINIP---QGKKDRKLSIQSSFDLFFRAEEVEHRCERCMHNRSIALHKFCQLPRVIIIHLKRY 512 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52616.12568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52616.12568.1 >prot_H-elongata_contig52616.12568.1 ID=prot_H-elongata_contig52616.12568.1|Name=mRNA_H-elongata_contig52616.12568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp INTLHEETQPRLQVAAAAAAASAASVVGKPLRATVSASSQQDLSLDHHGSback to top mRNA from alignment at H-elongata_contig52616:92..2039+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52616.12568.1 ID=mRNA_H-elongata_contig52616.12568.1|Name=mRNA_H-elongata_contig52616.12568.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1948bp|location=Sequence derived from alignment at H-elongata_contig52616:92..2039+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52616:92..2039+ >mRNA_H-elongata_contig52616.12568.1 ID=mRNA_H-elongata_contig52616.12568.1|Name=mRNA_H-elongata_contig52616.12568.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2262bp|location=Sequence derived from alignment at H-elongata_contig52616:92..2039+ (Himanthalia elongata Himel1 dioecious)back to top |