mRNA_H-elongata_contig52612.12567.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: D7G4G7_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G7_ECTSI) HSP 1 Score: 122 bits (307), Expect = 9.480e-31 Identity = 53/80 (66.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 1 FGLDPDKSFVDMATERRRVANFMCQACHRIFPTDLWGSKRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDFRWMAL 240
F +DP+ +F++MATE RRV +F+CQACHRIFPT+LWGS+RNMV L++ +ERF+ LR HE+MSV EVT GMRTSD WMA+
Sbjct: 619 FSVDPNTTFIEMATEHRRVVDFLCQACHRIFPTELWGSRRNMVCLSRGIERFVVLRWHETMSVLEVTAGMRTSDLEWMAV 698
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: D7G237_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G237_ECTSI) HSP 1 Score: 101 bits (252), Expect = 2.530e-23 Identity = 42/65 (64.62%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 1 FGLDPDKSFVDMATERRRVANFMCQACHRIFPTDLWGSKRNMVLLAKAVERFIGLRRHESMSVQE 195
F +DP+ +F++MATE RRV +F+CQACHRIFPT+LWGS+RNMV L++ +ERF+ LRRH++MSV E
Sbjct: 617 FSVDPNMTFIEMATEHRRVVDFLCQACHRIFPTELWGSRRNMVCLSRGIERFVVLRRHDTMSVLE 681
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: L8GIB5_ACACA (Telomerase reverse transcriptase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIB5_ACACA) HSP 1 Score: 61.2 bits (147), Expect = 4.110e-9 Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 25 FVDMATERRRVANFMCQACHRIFPTDLWGSKRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDFRWM 234
F + R+VA+F+ + P LWGSK N+ +LAK+V+ F+ LRRH+ SV +G+R D W+
Sbjct: 62 FANYCCTYRQVASFVKAVLTYLLPATLWGSKHNVAILAKSVDEFVRLRRHDRYSVHSAMSGLRLRDMTWL 131
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: A0A1L7SGC1_FUSMA (Telomerase reverse transcriptase n=2 Tax=Fusarium fujikuroi species complex TaxID=171627 RepID=A0A1L7SGC1_FUSMA) HSP 1 Score: 60.1 bits (144), Expect = 1.060e-8 Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 19 KSFVDMATERRRVANFMCQACHRIFPTDLWGS----KRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDFRWM 234
KS V++AT +V++F +I P D WG KRN + ++V+RFI LRR E+MS+ E+T M+ ++ W+
Sbjct: 465 KSLVELATPPSQVSSFCQAVLSKIIPRDFWGDDAVQKRNKFTIMRSVDRFIRLRRFETMSLHEITQNMKMANISWL 540
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: A0A250WZQ5_9CHLO (Telomerase reverse transcriptase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WZQ5_9CHLO) HSP 1 Score: 59.3 bits (142), Expect = 2.010e-8 Identity = 24/74 (32.43%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 13 PDKSFVDMATERRRVANFMCQACHRIFPTDLWGSKRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDFRWM 234
P+ + + ++ V +F+ C ++ P L GSK N L + + F+GLRRHE +S+ +V G+R++D W+
Sbjct: 857 PEDIIMSACSPQQHVTSFLFAVCRKVLPAGLMGSKNNWKQLRRIICLFVGLRRHEQLSLPQVVHGLRSTDMTWL 930
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: D5GMZ3_TUBMM (Telomerase reverse transcriptase n=1 Tax=Tuber melanosporum (strain Mel28) TaxID=656061 RepID=D5GMZ3_TUBMM) HSP 1 Score: 58.5 bits (140), Expect = 3.660e-8 Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 7 LDPDKSFVDMATERRRVANFMCQACHRIFPTDLWGSKRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDF 225
L P +SF D A+ V+ F + PT+ WGS+ N + V+RF+ LRR+E++S+ EV GM+ S F
Sbjct: 150 LKPKESFTDFASSTGEVSAFARAVILNVVPTEFWGSEENKKGFMRNVDRFVNLRRYETLSLHEVMQGMKASFF 222
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: A0A1S8VGP2_9FUNG (Telomerase reverse transcriptase (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VGP2_9FUNG) HSP 1 Score: 57.4 bits (137), Expect = 9.260e-8 Identity = 23/70 (32.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 28 VDMATERRRVANFMCQACHRIFPTDLWGSKRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDFRWMA 237
+D++ E ++V+ F+ I P DLWG N ++ V + + LRR+E++S+Q + TG++ S +W+A
Sbjct: 451 LDLSIEHQKVSLFIKSVLKHIIPKDLWGDDSNRDVILAVVSQLVSLRRYETLSLQNIITGIKMSKMKWLA 520
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: A0A218Z3Y7_9HELO (Telomerase reverse transcriptase n=1 Tax=Marssonina coronariae TaxID=503106 RepID=A0A218Z3Y7_9HELO) HSP 1 Score: 57.4 bits (137), Expect = 9.460e-8 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 22 SFVDMATERRRVANFMCQACHRIFPTDLWGS----KRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDFRWMA 237
S ++ AT V+ F A R+ P++ WG+ N K V+RFIGLRR ES+S+ EVT G++ SD W+A
Sbjct: 460 SMMNHATPTAMVSAFCRAALSRLIPSEFWGAGATQAHNERTFNKNVDRFIGLRRFESLSLHEVTQGLKISDIPWLA 535
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: A0A8H7XA39_9HELO (Telomerase reverse transcriptase n=1 Tax=Cadophora sp. M221 TaxID=2774352 RepID=A0A8H7XA39_9HELO) HSP 1 Score: 55.5 bits (132), Expect = 4.490e-7 Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 22 SFVDMATERRRVANFMCQACHRIFPTDLWGS----KRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDFRWMA 237
S ++ AT V+ F R+ P++ WGS K+N + +E+FI LRR ESMS+ +VT G++ +D W+A
Sbjct: 451 SMMNHATPNANVSAFCRAVLSRLIPSEFWGSGEIQKQNEKTFHQNIEKFIELRRFESMSLHQVTQGLKITDIEWLA 526
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Match: A0A8H4N3V9_9PEZI (Telomerase reverse transcriptase n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4N3V9_9PEZI) HSP 1 Score: 54.3 bits (129), Expect = 1.150e-6 Identity = 25/74 (33.78%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 25 FVDMATERRRVANFMCQACHRIFPTDLWGS----KRNMVLLAKAVERFIGLRRHESMSVQEVTTGMRTSDFRWM 234
F D+AT +V+ F +++ P DLWG N + + ++RFI LRR ES+++ EV M+ +D +W+
Sbjct: 481 FTDLATPNHQVSAFCRAVMNKVIPNDLWGEGETQTHNKHIFLRQIDRFICLRRFESLTLHEVLQDMKIADVKWL 554 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52612.12567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52612.12567.1 >prot_H-elongata_contig52612.12567.1 ID=prot_H-elongata_contig52612.12567.1|Name=mRNA_H-elongata_contig52612.12567.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp FGLDPDKSFVDMATERRRVANFMCQACHRIFPTDLWGSKRNMVLLAKAVEback to top mRNA from alignment at H-elongata_contig52612:973..1531- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52612.12567.1 ID=mRNA_H-elongata_contig52612.12567.1|Name=mRNA_H-elongata_contig52612.12567.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=559bp|location=Sequence derived from alignment at H-elongata_contig52612:973..1531- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52612:973..1531- >mRNA_H-elongata_contig52612.12567.1 ID=mRNA_H-elongata_contig52612.12567.1|Name=mRNA_H-elongata_contig52612.12567.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig52612:973..1531- (Himanthalia elongata Himel1 dioecious)back to top |